Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsIR64_08g0023740 | OGI:08077420 | 10/16 | IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | Chr08:28776077-28777660 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ATGGACAAGGCACTGAAGTCAGAGATAGAAGGGGTAGAGGAGATTGAGTCATGTTTTATAGCACCCAGTGAGGACACGCCTAGACAAGGGCTCTGGCTCTCTCCCCTCGACATAGTCATGGTCAGCAGAGGCCATACCCCTACTGTGTACTTCTACCAACGTGACACTGCCACTGTTGCTGCCGATTATTTCGAGGTAGGCAGGCTTAAGGAGGCTATGGCAAAGGCCCTAGTGGCCTTCTACCCCTTGGCAGGCCGTCTCAGTGTAGATGGTGATGGTAGGCCTGAAATTGACTGCAATGCCGAGGGTGCGCTCTTTGTTGTGGCTCAGTCAAAACTCACCGTTGATGCCTTCAGCGACCTTAAGCCATCACCAGAGTTGAGGAGGTTGTTTGCCCCCCGTATTGAGCCAGCATCCATCATGCTTGGAGTACAGGTCAGTATATATCTAGTTTGTGTGTGTGTGTGTATATTCAATTGTATAGAGCTAGCTTTGGACTAGTGTGGTGATATGTACCTAGGTGCACATTAATTATTCCTTGCAGGTGACTTTCTTGAGTTGTGGTGGTGTGGCATTAGGGACGGTGTTGCACCATGTCGCCATCGATGCCCTTAGCGCGTTCCATTTCTTCCAGACATGGTCTTCTTTCTGCCGAGATGGTGAAGCCGCCATGTTGGAGCTGCCCTGCCATGAACGCACCCTCCTCCGCACACGCTCCCCACCTATCGTCCACCCGGATGTGCACTCAATGTTCAGTCTAAAGCTCAACTTCTGTGAGCCATCAGACCCTATATCCACCAAGATATTCGTCATCTCCAAGAACCAGCTCGATGCCCTTAAACAAATATGTGGTGGATTGAGCACATTTTGTGCCATGAGCGCCCTTGTATGGCAGTGCATGTGCATTGCTCGGCAACTCCCTCTAGACGCCGAGACACGCGTCATCTTCCCAGTCAACATTCGGCGCCGTGTGAAGCCACCTCTCCCAGATCGCTACTTCGGCAATGCACTTGTCGACTTGAAAGTAGCCTCCACAGTTAGGGACATTGTCTTGGGGACACTGGATGTAACTGCTGCCCAGATAAAGAACGCATTGGGACGCCTTGACGATGAGATGCTGCAGTCGGCGATAGACTACAATGAGATGGCAGGGATGCCCAACAAGCATACCAAGGGAAACCTGCCAGATACAGAATTACGAATGGTCTCTTGGCTAGGCATGCCAGTTTATGATGCGGATTTTGGGTGGGGGAAGCCGGAGATGATGTCTCGTGCGGAGTCTGTGCGTGGCGGATTTGTTTATATGATGGATGGCACTGACAACGATGGGGGTGGCGTGCGTGTGCTCATGTGTATGGAGGCACGAAAGATGGAGGAGTTCGAGCGACTGTTTTATGCCAAGTTTGCACAATGAAGAAACTACCTAGCTAGAACATGATGCATGTTTTCTGTTCTATTATCAATAATGGATGTTTCATGTAATAATATAACCAAATACCTCCATATATTTTGGTGGCATGGTTGTTTCAGACATGACAGGGTGTGGTTGATTTACGCGGACACCACAAAAATGTGGTTGATTTA
More
|
||||||||||
| CDS seq | ATGGACAAGGCACTGAAGTCAGAGATAGAAGGGGTAGAGGAGATTGAGTCATGTTTTATAGCACCCAGTGAGGACACGCCTAGACAAGGGCTCTGGCTCTCTCCCCTCGACATAGTCATGGTCAGCAGAGGCCATACCCCTACTGTGTACTTCTACCAACGTGACACTGCCACTGTTGCTGCCGATTATTTCGAGGTAGGCAGGCTTAAGGAGGCTATGGCAAAGGCCCTAGTGGCCTTCTACCCCTTGGCAGGCCGTCTCAGTGTAGATGGTGATGGTAGGCCTGAAATTGACTGCAATGCCGAGGGTGCGCTCTTTGTTGTGGCTCAGTCAAAACTCACCGTTGATGCCTTCAGCGACCTTAAGCCATCACCAGAGTTGAGGAGGTTGTTTGCCCCCCGTATTGAGCCAGCATCCATCATGCTTGGAGTACAGGTGACTTTCTTGAGTTGTGGTGGTGTGGCATTAGGGACGGTGTTGCACCATGTCGCCATCGATGCCCTTAGCGCGTTCCATTTCTTCCAGACATGGTCTTCTTTCTGCCGAGATGGTGAAGCCGCCATGTTGGAGCTGCCCTGCCATGAACGCACCCTCCTCCGCACACGCTCCCCACCTATCGTCCACCCGGATGTGCACTCAATGTTCAGTCTAAAGCTCAACTTCTGTGAGCCATCAGACCCTATATCCACCAAGATATTCGTCATCTCCAAGAACCAGCTCGATGCCCTTAAACAAATATGTGGTGGATTGAGCACATTTTGTGCCATGAGCGCCCTTGTATGGCAGTGCATGTGCATTGCTCGGCAACTCCCTCTAGACGCCGAGACACGCGTCATCTTCCCAGTCAACATTCGGCGCCGTGTGAAGCCACCTCTCCCAGATCGCTACTTCGGCAATGCACTTGTCGACTTGAAAGTAGCCTCCACAGTTAGGGACATTGTCTTGGGGACACTGGATGTAACTGCTGCCCAGATAAAGAACGCATTGGGACGCCTTGACGATGAGATGCTGCAGTCGGCGATAGACTACAATGAGATGGCAGGGATGCCCAACAAGCATACCAAGGGAAACCTGCCAGATACAGAATTACGAATGGTCTCTTGGCTAGGCATGCCAGTTTATGATGCGGATTTTGGGTGGGGGAAGCCGGAGATGATGTCTCGTGCGGAGTCTGTGCGTGGCGGATTTGTTTATATGATGGATGGCACTGACAACGATGGGGGTGGCGTGCGTGTGCTCATGTGTATGGAGGCACGAAAGATGGAGGAGTTCGAGCGACTGTTTTATGCCAAGTTTGCACAATGA
More
|
||||||||||
| Protein seq | MDKALKSEIEGVEEIESCFIAPSEDTPRQGLWLSPLDIVMVSRGHTPTVYFYQRDTATVAADYFEVGRLKEAMAKALVAFYPLAGRLSVDGDGRPEIDCNAEGALFVVAQSKLTVDAFSDLKPSPELRRLFAPRIEPASIMLGVQVTFLSCGGVALGTVLHHVAIDALSAFHFFQTWSSFCRDGEAAMLELPCHERTLLRTRSPPIVHPDVHSMFSLKLNFCEPSDPISTKIFVISKNQLDALKQICGGLSTFCAMSALVWQCMCIARQLPLDAETRVIFPVNIRRRVKPPLPDRYFGNALVDLKVASTVRDIVLGTLDVTAAQIKNALGRLDDEMLQSAIDYNEMAGMPNKHTKGNLPDTELRMVSWLGMPVYDADFGWGKPEMMSRAESVRGGFVYMMDGTDNDGGGVRVLMCMEARKMEEFERLFYAKFAQ |
||||||||||
| Function | Putrescine hydroxycinnamoyltransferase 1 [UniProtKB/Swiss-Prot:Q5SMM8] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsIR64_08g0023740 | OsIR64_08g0023740.01 | Chr08 | 28776077 | 28777660 | + | NAM | ||
| CDS seq | ATGGACAAGGCACTGAAGTCAGAGATAGAAGGGGTAGAGGAGATTGAGTCATGTTTTATAGCACCCAGTGAGGACACGCCTAGACAAGGGCTCTGGCTCTCTCCCCTCGACATAGTCATGGTCAGCAGAGGCCATACCCCTACTGTGTACTTCTACCAACGTGACACTGCCACTGTTGCTGCCGATTATTTCGAGGTAGGCAGGCTTAAGGAGGCTATGGCAAAGGCCCTAGTGGCCTTCTACCCCTTGGCAGGCCGTCTCAGTGTAGATGGTGATGGTAGGCCTGAAATTGACTGCAATGCCGAGGGTGCGCTCTTTGTTGTGGCTCAGTCAAAACTCACCGTTGATGCCTTCAGCGACCTTAAGCCATCACCAGAGTTGAGGAGGTTGTTTGCCCCCCGTATTGAGCCAGCATCCATCATGCTTGGAGTACAGGTGACTTTCTTGAGTTGTGGTGGTGTGGCATTAGGGACGGTGTTGCACCATGTCGCCATCGATGCCCTTAGCGCGTTCCATTTCTTCCAGACATGGTCTTCTTTCTGCCGAGATGGTGAAGCCGCCATGTTGGAGCTGCCCTGCCATGAACGCACCCTCCTCCGCACACGCTCCCCACCTATCGTCCACCCGGATGTGCACTCAATGTTCAGTCTAAAGCTCAACTTCTGTGAGCCATCAGACCCTATATCCACCAAGATATTCGTCATCTCCAAGAACCAGCTCGATGCCCTTAAACAAATATGTGGTGGATTGAGCACATTTTGTGCCATGAGCGCCCTTGTATGGCAGTGCATGTGCATTGCTCGGCAACTCCCTCTAGACGCCGAGACACGCGTCATCTTCCCAGTCAACATTCGGCGCCGTGTGAAGCCACCTCTCCCAGATCGCTACTTCGGCAATGCACTTGTCGACTTGAAAGTAGCCTCCACAGTTAGGGACATTGTCTTGGGGACACTGGATGTAACTGCTGCCCAGATAAAGAACGCATTGGGACGCCTTGACGATGAGATGCTGCAGTCGGCGATAGACTACAATGAGATGGCAGGGATGCCCAACAAGCATACCAAGGGAAACCTGCCAGATACAGAATTACGAATGGTCTCTTGGCTAGGCATGCCAGTTTATGATGCGGATTTTGGGTGGGGGAAGCCGGAGATGATGTCTCGTGCGGAGTCTGTGCGTGGCGGATTTGTTTATATGATGGATGGCACTGACAACGATGGGGGTGGCGTGCGTGTGCTCATGTGTATGGAGGCACGAAAGATGGAGGAGTTCGAGCGACTGTTTTATGCCAAGTTTGCACAATGA
More
|
|||||||
| Protein seq | MDKALKSEIEGVEEIESCFIAPSEDTPRQGLWLSPLDIVMVSRGHTPTVYFYQRDTATVAADYFEVGRLKEAMAKALVAFYPLAGRLSVDGDGRPEIDCNAEGALFVVAQSKLTVDAFSDLKPSPELRRLFAPRIEPASIMLGVQVTFLSCGGVALGTVLHHVAIDALSAFHFFQTWSSFCRDGEAAMLELPCHERTLLRTRSPPIVHPDVHSMFSLKLNFCEPSDPISTKIFVISKNQLDALKQICGGLSTFCAMSALVWQCMCIARQLPLDAETRVIFPVNIRRRVKPPLPDRYFGNALVDLKVASTVRDIVLGTLDVTAAQIKNALGRLDDEMLQSAIDYNEMAGMPNKHTKGNLPDTELRMVSWLGMPVYDADFGWGKPEMMSRAESVRGGFVYMMDGTDNDGGGVRVLMCMEARKMEEFERLFYAKFAQ
More
|
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.120077 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_08g0543400 | RBH | 2.899372 | 4.817517 | 2.888633 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os08g43040 | RBH | 2.153185 | 3.143433 | 0.732444 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os08g0543400 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_08g0024120 | RBH | 0.536043 | 9.605024 | 5.485565 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_08g0023900 | RBH | 0.218214 | 3.076060 | 3.527491 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_08g0023900 | RBH | 0.0 | 0.0 | 0.449185 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_08g0024240 | RBH | 0.028378 | 0.418039 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_08g0023890 | RBH | 0.383177 | 0.000000 | 1.450762 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_08G0432500 | RBH | 6.341166 | 0.5928035 | 3.1090475 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_09g0018380 | RBH | 0.0 | 0.231087 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_08G0452000 | RBH | 1.619948 | 0.7885635 | 9.2957905 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_08g0023120 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_08g0023490 | RBH | 0.133529 | 2.136914 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_08g0023300 | RBH | 0.000000 | 0.000000 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_08g0024150 | RBH | 0.000000 | 0.058578 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_08g0023380 | RBH | 0.158278 | 5.377729 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_08G023600 | RBH | 0.322934 | 4.404814 | 4.224027 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_08g0023750 | RBH | 0.091660 | 0.818661 | 0.286257 |
