Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsIR64_08g0017830 | OGI:08064140 | 2/16 | IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | Chr08:23503077-23504678 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | GTGACATGTGCACCTTTTACAGCCCACCGAGTCAATTAATATGGATAAGAGTACTATATAAACTCAAAAACACTTAGGAAACCATAGTCAAATACGTTTTTAACGTACAGAAAGTTCATCAAGAATGGAACTGCTTATTAGCCTCCTTTTTAAACGTTCATACTTGTCTGTTTTTAGCAGCAGTCTAAGTAATTTACTGATCCCTGCAAAAAAAATGTAATTTACTGATCAAGTATCAAGCTTCATAAGATTAGTCTAGCTCCCCCAGCTAACAATGTGATGACGAATCGAGCAACGATGTAAAAGGTTGCGCAAAGCCAACCTATATAGGACGTGGCACTGCAAAATGATATGAAAATAGATAAACAAATATATGATAATTCTAATATTTATGAGGCAAGGAAAACATTAATATTGTATTATATGGTTTAAAAAATGTTGTATTCAAATTACTTTTTAGCAAAAGGAAGTGAAATTCAGTGACTGAATCCACTGAAACATCCATTTTACCTCATACTGCAATATTGCAAACTTCATCGGCTGAACTGACGAATTTATCGTAGTAGAGCTTATATCTTTTCGATGAAATAAAAAAATTATGCAATATTTGATGCATGAAATCCGTAAGGTAAAAGGCTTAATCCATGGTTTTTTTTTCACAAGGTATTCATCAAGAACAGTAACCATACTAAGTGAATGATGGTAACAAAATTCTGAGAACATAGAAATTGGTCAAAAGAAGTTCTGAACATGCCAAAAATCAAATATGTAACTCCGCACTGTAGCAGTAGCACTCTTTCTTGTGCTTGATCAAATCACTTGATGCCATTATATCATTACGATGAAAAGGAGTTATATTGATCTGAAAGAAATGTGAAATAGATCAAATCCCTTGAATGTTCTAAAATCACCATCATAATTTTCATTAGTGACAAACAGATGAAATGGGAAGGTAGAGAGGTAGGGGATCACAAACTTGTAAGGATATATTATTTAGCATCAAAGGGGAGGCCAATTTTCCTCGAGTGGCCATCCAGGTAGAATGTAACTTTGACCACCTCTGCTTACCGAAGATACTGAATCTTCCAAACAAACTTTTGGTTATTTGTTTATAGGAGGGGGAGGGGGGAGAACAAAGATTAACCTGAGCTAACAATCTAGCAAGAGATAAAAAGAACAAATAAATGAATGAATGAGTAAAATATAAAAGATGATATCGGCTACCTGAAGTGAGAGGATAATGGCACAGCAAAGGAGAAAATTGCTTAGTACCTCTTACAAAGAAGATATCATAGGATGGTTGTATTATAATATCTGGAAAGTCGGTGACCATGAACGAATATGTGGTACCAAATATATTGGGATATTTTCTTGATAGAGAACTCATATGGAGAAACCAGATAAGCCGCTGCTTTGGATGGGAATGTTATGGAGACTGACCTCAGTGATAGCCCATAGCTGCTGCTACAATGATAGTAGACAATAGGAATAGGAATGAACTGCAATATAAATTTATAAACACAACAAATTATAGCTACAGCAAAGTTGTAAATTTGATTTATATACCATGAACAGGGTTAGTGGAAACCAAATAAATACCAT
More
|
||||||||||
| CDS seq | ATGTTCATTCCTATTCCTATTGTCTACTATCATTGTAGCAGCAGCTATGGGCTATCACTGAGATTGTTAGCTCAGGTTAATCTTTGTTCTCCCCCCTCCCCCTCCTATAAACAAATAACCAAAAGTTTGTTTGGAAGATTCAGTATCTTCGGTAAGCAGAGGTGGTCAAAGTTACATTCTACCTGGATGGCCACTCGAGGAAAATTGGCCTCCCCTTTGATGCTAAATAATATATCCTTACAAATCAATATAACTCCTTTTCATCGTAATGATATAATGGCATCAAGTGATTTGATCAAGCACAAGAAAGAGTGCTACTGCTACAGTGCGGAGTTACATATTTGA |
||||||||||
| Protein seq | MFIPIPIVYYHCSSSYGLSLRLLAQVNLCSPPSPSYKQITKSLFGRFSIFGKQRWSKLHSTWMATRGKLASPLMLNNISLQINITPFHRNDIMASSDLIKHKKECYCYSAELHI |
||||||||||
| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsIR64_08g0017830 | OsIR64_08g0017830.01 | Chr08 | 23503077 | 23504678 | - | NAM | ||
| CDS seq | ATGTTCATTCCTATTCCTATTGTCTACTATCATTGTAGCAGCAGCTATGGGCTATCACTGAGGTCAGTCTCCATAACATTCCCATCCAAAGCAGCGGCTTATCTGGTTTCTCCATATGAGTTCTCTATCAAGAAAATATCCCAATATATTTGGTACCACATATTCGTTCATGGTCACCGACTTTCCAGATATTATAATACAACCATCCTATGA
More
|
|||||||
| Protein seq | MFIPIPIVYYHCSSSYGLSLRSVSITFPSKAAAYLVSPYEFSIKKISQYIWYHIFVHGHRLSRYYNTTIL |
|||||||
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsIR64_08g0017830 | OsIR64_08g0017830.03 | Chr08 | 23503992 | 23504678 | - | NAM | ||
| CDS seq | ATGTTCATTCCTATTCCTATTGTCTACTATCATTGTAGCAGCAGCTATGGGCTATCACTGAGGTCAGTCTCCATAACATTCCCATCCAAAGCAGCGGCTTATCTGGTTTCTCCATATGAGTTCTCTATCAAGAAAATATCCCAATATATTTGGTACCACATATTCGTTCATGGTCACCGACTTTCCAGATATTATAATACAACCATCCTATGA
More
|
|||||||
| Protein seq | MFIPIPIVYYHCSSSYGLSLRSVSITFPSKAAAYLVSPYEFSIKKISQYIWYHIFVHGHRLSRYYNTTIL |
|||||||
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsIR64_08g0017830 | OsIR64_08g0017830.02 | Chr08 | 23503077 | 23504678 | - | NAM | ||
| CDS seq | ATGTTCATTCCTATTCCTATTGTCTACTATCATTGTAGCAGCAGCTATGGGCTATCACTGAGATTGTTAGCTCAGGTTAATCTTTGTTCTCCCCCCTCCCCCTCCTATAAACAAATAACCAAAAGTTTGTTTGGAAGATTCAGTATCTTCGGTAAGCAGAGGTGGTCAAAGTTACATTCTACCTGGATGGCCACTCGAGGAAAATTGGCCTCCCCTTTGATGCTAAATAATATATCCTTACAAATCAATATAACTCCTTTTCATCGTAATGATATAATGGCATCAAGTGATTTGATCAAGCACAAGAAAGAGTGCTACTGCTACAGTGCGGAGTTACATATTTGA
More
|
|||||||
| Protein seq | MFIPIPIVYYHCSSSYGLSLRLLAQVNLCSPPSPSYKQITKSLFGRFSIFGKQRWSKLHSTWMATRGKLASPLMLNNISLQINITPFHRNDIMASSDLIKHKKECYCYSAELHI |
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
| A5 | Chr08 | 23504233 | 23504517 | - | OsIR64_08g0017830.01 | OsIR64_08g0017830.01,OsIR64_08g0017830.02 | All |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.164532 | 0.0 | 2.386486 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os08g34850 | SBH | 0.046532 | 0.048489 | 0.015589 |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_08g0017900 | RBH | 1.620519 | 5.706493 | 7.107779 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_08G0350800 | RBH | 0.54169 | 2.7581155 | 1.1273075 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_08G0368200 | RBH | 0.0456625 | 0.2565395 | 0.1708045 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
