Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsIR64_07g0026440 | OGI:07075600 | 16/16 | IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | Chr07:28726393-28727697 | ||||||||
| Gene Symbol | OS-RP2, LTPL2, OsLTPL2 | ||||||||||
| DNA seq | ATATACTACCATCCAAGAAGGGAAGCTAGCTAGCTAGCCGTTTCTTGGCGGCCATGGCTGGCTCCCCCGTGCTCCGCGTCGCGATACTCGCCGCGGTGCTCGTGCTCCCGTTCGTCGGCGTGCCGGCGCCGGCGGCGGCGCAGACCAAGAAGTTCTGCCTCAGCCAGTTCGCCATCGCCAGCCAGGCGTGCGCCATCCTGCCTCCCGGCTCGGATCATCATCACCACCATGATGACGACGATGACGACGACGACGACGACGATGATGATGATGATGATGATGATGATGATGATGACGAGGATGACCAGGGTGGTGGCGACGACGGCGGCGGCGGCGGCGGCGGTGGCGGCGGTGGCGACGATAGTGGAGGAGACGACGGAGGAGGCGGCGGCGGCGGCGATGGGGATCGTCGCCGCAACCGCAAGTCCATGGTCACCGTCGACGCCGAGGTAGACACCGACGAGGACGCCCTGCGCGTCAACGGCACGGGCGCCGGCGCCGGCGCCGGCGCCGGCAACCATACCCGCGGCAGCGGTGGCGTCGTCGTCCGCCGCAGGCACCGCCGTCGCCGCCGAAGCCGCCGCCGCCGCCGCCACCACCCCGGCGTGCGTGAGGGCGAAGACGACGACAGCGGCGGCGACGACGAAGACCACGGCGGCGACGACGACGACGACCACGACGACGACGACGATGACGACGACCACGACGACGACGACGACGACGATGACGATGACGACGACGACGACGACGACCACCGCGCGAACAGAGACTGCTGCCGGTGGCTGAAGGAGGTGGAGCCGGCGTGCGTGTGCGACGCGCTGCTCCGCCTGCCGCCATTCCTCGTGAAGCCGCAGCACAAGTACACCGTCAAGGTCGGCGACAGCTGCAAGTATACCTACCACTGCGGCGGCTACTAGCTAATTAAGCTAGCGAATGTACCATGCATTACTGAGCTTAAGCTGCGTGTTTTCTTCAGGATTAGCACTGGTAAGTGTGATTAAGAAGAGCAGTATTATGGTATTTTGCTGTGTGTTAATTACCACCAGTCGCTTAACACTTCGTTTTTATAGTATATATAGAGAGATATATACATATTGTAATACTGGTGTGTATGTTCTTGTGTTGCTGGTCTGATCTTGGGCTAGCTAGCCATGGAAGTTTGTGTACTACTTCCTTGTAATGTTTAATTTCTAAGAACACTGTGTACTCAAGCGTACGTGCATGCATTGGGGTTGGAGAACTAACCATTGCATTGCAAACTGGAGCTTCTGTACCACGTGCCATATATAAATAAGAAAAATGTGT
More
|
||||||||||
| CDS seq | ATGGCTGGCTCCCCCGTGCTCCGCGTCGCGATACTCGCCGCGGTGCTCGTGCTCCCGTTCGTCGGCGTGCCGGCGCCGGCGGCGGCGCAGACCAAGAAGTTCTGCCTCAGCCAGTTCGCCATCGCCAGCCAGGCGTGCGCCATCCTGCCTCCCGGCTCGGATCATCATCACCACCATGATGACGACGATGACGACGACGACGACGACGATGATGATGATGATGATGATGATGATGATGATGACGAGGATGACCAGGGTGGTGGCGACGACGGCGGCGGCGGCGGCGGCGGTGGCGGCGGTGGCGACGATAGTGGAGGAGACGACGGAGGAGGCGGCGGCGGCGGCGATGGGGATCGTCGCCGCAACCGCAAGTCCATGGTCACCGTCGACGCCGAGGTAGACACCGACGAGGACGCCCTGCGCGTCAACGGCACGGGCGCCGGCGCCGGCGCCGGCGCCGGCAACCATACCCGCGGCAGCGGTGGCGTCGTCGTCCGCCGCAGGCACCGCCGTCGCCGCCGAAGCCGCCGCCGCCGCCGCCACCACCCCGGCGTGCGTGAGGGCGAAGACGACGACAGCGGCGGCGACGACGAAGACCACGGCGGCGACGACGACGACGACCACGACGACGACGACGATGACGACGACCACGACGACGACGACGACGACGATGACGATGACGACGACGACGACGACGACCACCGCGCGAACAGAGACTGCTGCCGGTGGCTGAAGGAGGTGGAGCCGGCGTGCGTGTGCGACGCGCTGCTCCGCCTGCCGCCATTCCTCGTGAAGCCGCAGCACAAGTACACCGTCAAGGTCGGCGACAGCTGCAAGTATACCTACCACTGCGGCGGCTACTAG
More
|
||||||||||
| Protein seq | MAGSPVLRVAILAAVLVLPFVGVPAPAAAQTKKFCLSQFAIASQACAILPPGSDHHHHHDDDDDDDDDDDDDDDDDDDDDDEDDQGGGDDGGGGGGGGGGGDDSGGDDGGGGGGGDGDRRRNRKSMVTVDAEVDTDEDALRVNGTGAGAGAGAGNHTRGSGGVVVRRRHRRRRRSRRRRRHHPGVREGEDDDSGGDDEDHGGDDDDDHDDDDDDDDHDDDDDDDDDDDDDDDDHRANRDCCRWLKEVEPACVCDALLRLPPFLVKPQHKYTVKVGDSCKYTYHCGGY |
||||||||||
| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsIR64_07g0026440 | OsIR64_07g0026440.01 | Chr07 | 28726393 | 28727697 | + | NAM | ||
| CDS seq | ATGGCTGGCTCCCCCGTGCTCCGCGTCGCGATACTCGCCGCGGTGCTCGTGCTCCCGTTCGTCGGCGTGCCGGCGCCGGCGGCGGCGCAGACCAAGAAGTTCTGCCTCAGCCAGTTCGCCATCGCCAGCCAGGCGTGCGCCATCCTGCCTCCCGGCTCGGATCATCATCACCACCATGATGACGACGATGACGACGACGACGACGACGATGATGATGATGATGATGATGATGATGATGATGACGAGGATGACCAGGGTGGTGGCGACGACGGCGGCGGCGGCGGCGGCGGTGGCGGCGGTGGCGACGATAGTGGAGGAGACGACGGAGGAGGCGGCGGCGGCGGCGATGGGGATCGTCGCCGCAACCGCAAGTCCATGGTCACCGTCGACGCCGAGGTAGACACCGACGAGGACGCCCTGCGCGTCAACGGCACGGGCGCCGGCGCCGGCGCCGGCGCCGGCAACCATACCCGCGGCAGCGGTGGCGTCGTCGTCCGCCGCAGGCACCGCCGTCGCCGCCGAAGCCGCCGCCGCCGCCGCCACCACCCCGGCGTGCGTGAGGGCGAAGACGACGACAGCGGCGGCGACGACGAAGACCACGGCGGCGACGACGACGACGACCACGACGACGACGACGATGACGACGACCACGACGACGACGACGACGACGATGACGATGACGACGACGACGACGACGACCACCGCGCGAACAGAGACTGCTGCCGGTGGCTGAAGGAGGTGGAGCCGGCGTGCGTGTGCGACGCGCTGCTCCGCCTGCCGCCATTCCTCGTGAAGCCGCAGCACAAGTACACCGTCAAGGTCGGCGACAGCTGCAAGTATACCTACCACTGCGGCGGCTACTAG
More
|
|||||||
| Protein seq | MAGSPVLRVAILAAVLVLPFVGVPAPAAAQTKKFCLSQFAIASQACAILPPGSDHHHHHDDDDDDDDDDDDDDDDDDDDDDEDDQGGGDDGGGGGGGGGGGDDSGGDDGGGGGGGDGDRRRNRKSMVTVDAEVDTDEDALRVNGTGAGAGAGAGNHTRGSGGVVVRRRHRRRRRSRRRRRHHPGVREGEDDDSGGDDEDHGGDDDDDHDDDDDDDDHDDDDDDDDDDDDDDDDHRANRDCCRWLKEVEPACVCDALLRLPPFLVKPQHKYTVKVGDSCKYTYHCGGY
More
|
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_07g0655800 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os07g46210 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os07g0655800 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_07g0026070 | RBH | 0.0 | 0.0 | 7.282747 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_07g0026130 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_07g0025950 | RBH | 0.0 | 0.0 | 27.031155 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_07g0025710 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_07g0025960 | RBH | 0.0 | 0.0 | 7.271780 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_07G0448800 | RBH | 0 | 0 | 0.005532 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_03g0017850 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_07G0461000 | RBH | 0 | 0 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_07g0025720 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_07g0026160 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_07g0025800 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_Ung0040150 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_07g0025750 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_07G025860 | RBH | 0.0 | 0.0 | 22.723137 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_07g0025650 | RBH | 0.0 | 0.0 | 0.0 |
