Rice Gene Index (RGI): a comprehensive pan-genome database for comparative and functional genomics of Asian rice.

Basic Info

Gene ID		OGI # \| Score			Accession \| Assembly \| Annotation			Location		Links
OsIR64_07g0013680		OGI:07044540 \| 16/16			IR 64 \| OsIR64RS1 \| Gramene(+IsoSeq)			Chr07:16903426-16906141		Homologues MicroCollinearity RGI-JBrowse
Gene Symbol		NAC65, ONAC065, ONAC65
DNA seq		GGCAGATCAATGCAGTATATTGATTTTGAATAGGGAATATAATGATTGAAAAGGGAGTATATTCATTACTTACAATAATGTTACTTACATTGAGTTCAATCAATAAACAAATAACTCATCTATGCATAGATTAGTCAATAAACTAAGGAACATCTATCTACTCTGCCTCTAGTCTACAGATTACACCAGAATATCAACAAATCTCGCCTTTGCGCTACTGATTACAGCTCTTCTTAGAAAGACAATGTCAATGCCAGTGTTCTTGGTGGCTTGCTATCTCCAGGATGCTAACTAATCTGCAAGATCGAAGAGCTCGTCCATGGAGAAGTCGCAGCTCGCGCCATCGGTGCTGAAGTCGACGTAGCTGAGCACCTCGTCAATGCTCTCCGGGAAATCCGAATCACACCACGCCGGCGCCTCCTCGCCATCCATGGAGGAGGAGGAGTACTTTTGCTTGTCCATGAGGTTCACCGCCGCTGCTGCACCACCTCCGGTGTCAGCTTGCTCCAGTGGCAGGACGATCGGTTCGGCGTGATCACCGAACACCGTGTCGATCAGCGCGCCGGAGGAGGAGCTCTGACCGGCGCCATCAGCATCCATCAGCAGAGGATCGTGCTGTGGCGGAGACCCCGGCTGCTCGAACATGGCGGTCTCTGACACGCCACCGTCGTTGTCAGCGTGGGCGCCGGCGGTGAAGTCGACGTAGCTGAGCGCCTCATCAATGTTCTCCGGAAAATCGAAATCACACCACGCCGGCGCCGCCTCGCCGTCCATGGCGTCGGCCTGCTCTGGTGGCAGAACGATCAAGTCGGCGAGATCGCGGAACACCGGGTCGATCACGCCGTAGGAGCCCTGATTGGCGCAATCTGCTGCAAGCGGCGGAACGGGCTGGTCGAACAGGGCCTCGGTAGTCTCTGCTCCGCCTCCGGCGCCAGCTTGCTCTGATGGCAGGACGATCATGTCACCGTAGGAGCTCTGATGATCGGCACAATCATCATTGCCAGGAGGGAGATCCACCACTGCCGCGGGAGCGAGCGGAGGCCCTTGCTGCTCGAACAGGGCGGCCTCTGACATGGGAGTCCAGGGCGTGGCGCGTTCCATGCCGCTGTCGTGGGCGCCGGCGGTGAAGTCAATGCCGCTGTCGAAATCACACAACGCCATGGAGTAGTTCTGGTTCACCACCGCTGCAGTAGTCTCTGCGGTGTCTCCGGCATCAGCTTGCTCACGGATCATGTCGGGGAGATCATGGAACACCGGCTCGATCACGCCGGAGAAGCTCTGATCGGCGGATTCAGTGCAATCAGCATCGCCAGGAGGGAGATCCACGGCGCTCGGCTGCTCGAACATGGCGATCTCTGACACGGGACGCCATGGCGCGGCGCGTCCCACACTGCCGTCATTGTTGTCGTGGGCACCGGCGGTGAAGTTGATGTAGCTGAGCAACTCATCAGTGCTCTCTGGAAAATCGAAATCACACCACGCCGGCGCTGCCTCGCCGTCCATGGAGGAGGAGTATTTCAGCTTGTCCGTGAGGCTCACCATTGCTGTGGTAGTCTCTGCTCCGCCTCCGGTGTCAGCTTGCTCTGGTGGCAGCACGGTCATGTCGGGGAGATCACGGAACGCCGGGTCGATCACGCCAGAGCAGCTCTGATGATCGGCGCAATCAGCATTGCCAGGAGGGAGATCCACCATTGCCACGGGCGCGAGCGGAGGCTCCTGCTGCGCGAGCACAGGTGGCAGGACCATCAGGTCAGCAAGATCGCGGAACGCCGGATCGATGACACCGTAGGAGCTCTGATCGTCGCCATCTGCTGCTAGCGGAAGAACGGGCTGCTCGGTCATGGCGTCCGTGAGGTTCACCACCGCTGCTGTAGTCTCTGCAGTGTCTCCGGCATCAGCTTGCTCTGGCATCATGTCGGGGAGATCGCGGAACACAGGCTCGATCACGCCGGAGAAGCTCTGATCGGCGGATTCGGCGCAATCCACGGCGCTCGACTGCTGCACGAACAGGGCGGTCTCTGCCACGGCGCGCCGGGGCGCGGCGCGTTCTCCACCGTCGACGTCGTCGTCGTGGACGCGGGCGCCCAGGCGTTCCGGCTCCCGCTTGCGCTTCTTGCCGTGGCCGCTGAACCGGACGCGGTAAAGCCGAATCGGCGACGAGGCGAGGTCAGCGGGCGCCGTGATGGCGTACTCGTGCATCACCCACCCCGAGCTGCCCCTCTCCCCCTCGGCGAAGAAGCTCAGCATGTACTTCCGCCACTCGATCTCCAATTCCCCGCCGACTTCGCCGCCGCCGCCGTCGCCGGGGACGCGCAGCCTCTCGCCGTCGATGCACACCCGCTGCCCCTGCCAGAACCCCCCACCCTCGACGGTACGCTTCTGCCGCTTCCCCCTGACGTTCTTGGCGCGCGCCTCGGCGAAGAAGAAGGCCTCGTCGCCGCCCCGGCCGTGATCGGCGAGGAGCATCCATGGCGGCGCGCCGAGGGGATCCGCCTCGTGGATGACGCCGTGGAGCGGGATCGGCTGCTTCCGGAGGCGCCGGAGCAGGTAGCGGGAGACGAGCTCGTCGTCGGCGGGGTCGAACCTGACGCCCGGCGGAAGCCCATCCGCGGCCGCCGCCATAGCCGCCTCGATCGCGCGAATTCTAGGGTTTTGTGGGGGGGCATTCTAGGGTTTGGGGGGGAAAGGAAGGGAGGAGGCGAGGAGAGGCGGAAGC More
CDS seq		ATGGCGGCGGCCGCGGATGGGCTTCCGCCGGGCGTCAGGTTCGACCCCGCCGACGACGAGCTCGTCTCCCGCTACCTGCTCCGGCGCCTCCGGAAGCAGCCGATCCCGCTCCACGGCGTCATCCACGAGGCGGATCCCCTCGGCGCGCCGCCATGGATGCTCCTCGCCGATCACGGCCGGGGCGGCGACGAGGCCTTCTTCTTCGCCGAGGCGCGCGCCAAGAACGTCAGGGGGAAGCGGCAGAAGCGTACCGTCGAGGGTGGGGGGTTCTGGCAGGGGCAGCGGGTGTGCATCGACGGCGAGAGGCTGCGCGTCCCCGGCGACGGCGGCGGCGGCGAAGTCGGCGGGGAATTGGAGATCGAGTGGCGGAAGTACATGCTGAGCTTCTTCGCCGAGGGGGAGAGGGGCAGCTCGGGGTGGGTGATGCACGAGTACGCCATCACGGCGCCCGCTGACCTCGCCTCGTCGCCGATTCGGCTTTACCGCGTCCGGTTCAGCGGCCACGGCAAGAAGCGCAAGCGGGAGCCGGAACGCCTGGGCGCCCGCGTCCACGACGACGACGTCGACGGTGGAGAACGCGCCGCGCCCCGGCGCGCCGTGGCAGAGACCGCCCTGTTCGTGCAGCAGTCGAGCGCCGTGGATTGCGCCGAATCCGCCGATCAGAGCTTCTCCGGCGTGATCGAGCCTGTGTTCCGCGATCTCCCCGACATGATGCCAGAGCAAGCTGATGCCGGAGACACTGCAGAGACTACAGCAGCGGTGGTGAACCTCACGGACGCCATGACCGAGCAGCCCGTTCTTCCGCTAGCAGCAGATGGCGACGATCAGAGCTCCTACGGTGTCATCGATCCGGCGTTCCGCGATCTTGCTGACCTGATGGTCCTGCCACCTGTGCTCGCGCAGCAGGAGCCTCCGCTCGCGCCCGTGGCAATGGTGGATCTCCCTCCTGGCAATGCTGATTGCGCCGATCATCAGAGCTGCTCTGGCGTGATCGACCCGGCGTTCCGTGATCTCCCCGACATGACCGTGCTGCCACCAGAGCAAGCTGACACCGGAGGCGGAGCAGAGACTACCACAGCAATGGTGAGCCTCACGGACAAGCTGAAATACTCCTCCTCCATGGACGGCGAGGCAGCGCCGGCGTGGTGTGATTTCGATTTTCCAGAGAGCACTGATGAGTTGCTCAGCTACATCAACTTCACCGCCGGTGCCCACGACAACAATGACGGCAGTGTGGGACGCGCCGCGCCATGGCGTCCCGTGTCAGAGATCGCCATGTTCGAGCAGCCGAGCGCCGTGGATCTCCCTCCTGGCGATGCTGATTGCACTGAATCCGCCGATCAGAGCTTCTCCGGCGTGATCGAGCCGGTGTTCCATGATCTCCCCGACATGATCCGTGAGCAAGCTGATGCCGGAGACACCGCAGAGACTACTGCAGCGGTGGTGAACCAGAACTACTCCATGGCGTTGTGTGATTTCGACAGCGGCATTGACTTCACCGCCGGCGCCCACGACAGCGGCATGGAACGCGCCACGCCCTGGACTCCCATGTCAGAGGCCGCCCTGTTCGAGCAGCAAGGGCCTCCGCTCGCTCCCGCGGCAGTGGTGGATCTCCCTCCTGGCAATGATGATTGTGCCGATCATCAGAGCTCCTACGGTGACATGATCGTCCTGCCATCAGAGCAAGCTGGCGCCGGAGGCGGAGCAGAGACTACCGAGGCCCTGTTCGACCAGCCCGTTCCGCCGCTTGCAGCAGATTGCGCCAATCAGGGCTCCTACGGCGTGATCGACCCGGTGTTCCGCGATCTCGCCGACTTGATCGTTCTGCCACCAGAGCAGGCCGACGCCATGGACGGCGAGGCGGCGCCGGCGTGGTGTGATTTCGATTTTCCGGAGAACATTGATGAGGCGCTCAGCTACGTCGACTTCACCGCCGGCGCCCACGCTGACAACGACGGTGGCGTGTCAGAGACCGCCATGTTCGAGCAGCCGGGGTCTCCGCCACAGCACGATCCTCTGCTGATGGATGCTGATGGCGCCGGTCAGAGCTCCTCCTCCGGCGCGCTGATCGACACGGTGTTCGGTGATCACGCCGAACCGATCGTCCTGCCACTGGAGCAAGCTGACACCGGAGGTGGTGCAGCAGCGGCGGTGAACCTCATGGACAAGCAAAAGTACTCCTCCTCCTCCATGGATGGCGAGGAGGCGCCGGCGTGGTGTGATTCGGATTTCCCGGAGAGCATTGACGAGGTGCTCAGCTACGTCGACTTCAGCACCGATGGCGCGAGCTGCGACTTCTCCATGGACGAGCTCTTCGATCTTGCAGATTAG More
Protein seq		MAAAADGLPPGVRFDPADDELVSRYLLRRLRKQPIPLHGVIHEADPLGAPPWMLLADHGRGGDEAFFFAEARAKNVRGKRQKRTVEGGGFWQGQRVCIDGERLRVPGDGGGGEVGGELEIEWRKYMLSFFAEGERGSSGWVMHEYAITAPADLASSPIRLYRVRFSGHGKKRKREPERLGARVHDDDVDGGERAAPRRAVAETALFVQQSSAVDCAESADQSFSGVIEPVFRDLPDMMPEQADAGDTAETTAAVVNLTDAMTEQPVLPLAADGDDQSSYGVIDPAFRDLADLMVLPPVLAQQEPPLAPVAMVDLPPGNADCADHQSCSGVIDPAFRDLPDMTVLPPEQADTGGGAETTTAMVSLTDKLKYSSSMDGEAAPAWCDFDFPESTDELLSYINFTAGAHDNNDGSVGRAAPWRPVSEIAMFEQPSAVDLPPGDADCTESADQSFSGVIEPVFHDLPDMIREQADAGDTAETTAAVVNQNYSMALCDFDSGIDFTAGAHDSGMERATPWTPMSEAALFEQQGPPLAPAAVVDLPPGNDDCADHQSSYGDMIVLPSEQAGAGGGAETTEALFDQPVPPLAADCANQGSYGVIDPVFRDLADLIVLPPEQADAMDGEAAPAWCDFDFPENIDEALSYVDFTAGAHADNDGGVSETAMFEQPGSPPQHDPLLMDADGAGQSSSSGALIDTVFGDHAEPIVLPLEQADTGGGAAAAVNLMDKQKYSSSSMDGEEAPAWCDSDFPESIDEVLSYVDFSTDGASCDFSMDELFDLAD
Function		NAC domain-containing protein 83 [UniProtKB/Swiss-Prot:Q9FY93]

Transcripts

Gene	Transcript	Chromosome	Start	End	Strand	Source
OsIR64_07g0013680	OsIR64_07g0013680.01	Chr07	16903426	16906141	-	NAM
CDS seq	ATGGCGGCGGCCGCGGATGGGCTTCCGCCGGGCGTCAGGTTCGACCCCGCCGACGACGAGCTCGTCTCCCGCTACCTGCTCCGGCGCCTCCGGAAGCAGCCGATCCCGCTCCACGGCGTCATCCACGAGGCGGATCCCCTCGGCGCGCCGCCATGGATGCTCCTCGCCGATCACGGCCGGGGCGGCGACGAGGCCTTCTTCTTCGCCGAGGCGCGCGCCAAGAACGTCAGGGGGAAGCGGCAGAAGCGTACCGTCGAGGGTGGGGGGTTCTGGCAGGGGCAGCGGGTGTGCATCGACGGCGAGAGGCTGCGCGTCCCCGGCGACGGCGGCGGCGGCGAAGTCGGCGGGGAATTGGAGATCGAGTGGCGGAAGTACATGCTGAGCTTCTTCGCCGAGGGGGAGAGGGGCAGCTCGGGGTGGGTGATGCACGAGTACGCCATCACGGCGCCCGCTGACCTCGCCTCGTCGCCGATTCGGCTTTACCGCGTCCGGTTCAGCGGCCACGGCAAGAAGCGCAAGCGGGAGCCGGAACGCCTGGGCGCCCGCGTCCACGACGACGACGTCGACGGTGGAGAACGCGCCGCGCCCCGGCGCGCCGTGGCAGAGACCGCCCTGTTCGTGCAGCAGTCGAGCGCCGTGGATTGCGCCGAATCCGCCGATCAGAGCTTCTCCGGCGTGATCGAGCCTGTGTTCCGCGATCTCCCCGACATGATGCCAGAGCAAGCTGATGCCGGAGACACTGCAGAGACTACAGCAGCGGTGGTGAACCTCACGGACGCCATGACCGAGCAGCCCGTTCTTCCGCTAGCAGCAGATGGCGACGATCAGAGCTCCTACGGTGTCATCGATCCGGCGTTCCGCGATCTTGCTGACCTGATGGTCCTGCCACCTGTGCTCGCGCAGCAGGAGCCTCCGCTCGCGCCCGTGGCAATGGTGGATCTCCCTCCTGGCAATGCTGATTGCGCCGATCATCAGAGCTGCTCTGGCGTGATCGACCCGGCGTTCCGTGATCTCCCCGACATGACCGTGCTGCCACCAGAGCAAGCTGACACCGGAGGCGGAGCAGAGACTACCACAGCAATGGTGAGCCTCACGGACAAGCTGAAATACTCCTCCTCCATGGACGGCGAGGCAGCGCCGGCGTGGTGTGATTTCGATTTTCCAGAGAGCACTGATGAGTTGCTCAGCTACATCAACTTCACCGCCGGTGCCCACGACAACAATGACGGCAGTGTGGGACGCGCCGCGCCATGGCGTCCCGTGTCAGAGATCGCCATGTTCGAGCAGCCGAGCGCCGTGGATCTCCCTCCTGGCGATGCTGATTGCACTGAATCCGCCGATCAGAGCTTCTCCGGCGTGATCGAGCCGGTGTTCCATGATCTCCCCGACATGATCCGTGAGCAAGCTGATGCCGGAGACACCGCAGAGACTACTGCAGCGGTGGTGAACCAGAACTACTCCATGGCGTTGTGTGATTTCGACAGCGGCATTGACTTCACCGCCGGCGCCCACGACAGCGGCATGGAACGCGCCACGCCCTGGACTCCCATGTCAGAGGCCGCCCTGTTCGAGCAGCAAGGGCCTCCGCTCGCTCCCGCGGCAGTGGTGGATCTCCCTCCTGGCAATGATGATTGTGCCGATCATCAGAGCTCCTACGGTGACATGATCGTCCTGCCATCAGAGCAAGCTGGCGCCGGAGGCGGAGCAGAGACTACCGAGGCCCTGTTCGACCAGCCCGTTCCGCCGCTTGCAGCAGATTGCGCCAATCAGGGCTCCTACGGCGTGATCGACCCGGTGTTCCGCGATCTCGCCGACTTGATCGTTCTGCCACCAGAGCAGGCCGACGCCATGGACGGCGAGGCGGCGCCGGCGTGGTGTGATTTCGATTTTCCGGAGAACATTGATGAGGCGCTCAGCTACGTCGACTTCACCGCCGGCGCCCACGCTGACAACGACGGTGGCGTGTCAGAGACCGCCATGTTCGAGCAGCCGGGGTCTCCGCCACAGCACGATCCTCTGCTGATGGATGCTGATGGCGCCGGTCAGAGCTCCTCCTCCGGCGCGCTGATCGACACGGTGTTCGGTGATCACGCCGAACCGATCGTCCTGCCACTGGAGCAAGCTGACACCGGAGGTGGTGCAGCAGCGGCGGTGAACCTCATGGACAAGCAAAAGTACTCCTCCTCCTCCATGGATGGCGAGGAGGCGCCGGCGTGGTGTGATTCGGATTTCCCGGAGAGCATTGACGAGGTGCTCAGCTACGTCGACTTCAGCACCGATGGCGCGAGCTGCGACTTCTCCATGGACGAGCTCTTCGATCTTGCAGATTAG More
Protein seq	MAAAADGLPPGVRFDPADDELVSRYLLRRLRKQPIPLHGVIHEADPLGAPPWMLLADHGRGGDEAFFFAEARAKNVRGKRQKRTVEGGGFWQGQRVCIDGERLRVPGDGGGGEVGGELEIEWRKYMLSFFAEGERGSSGWVMHEYAITAPADLASSPIRLYRVRFSGHGKKRKREPERLGARVHDDDVDGGERAAPRRAVAETALFVQQSSAVDCAESADQSFSGVIEPVFRDLPDMMPEQADAGDTAETTAAVVNLTDAMTEQPVLPLAADGDDQSSYGVIDPAFRDLADLMVLPPVLAQQEPPLAPVAMVDLPPGNADCADHQSCSGVIDPAFRDLPDMTVLPPEQADTGGGAETTTAMVSLTDKLKYSSSMDGEAAPAWCDFDFPESTDELLSYINFTAGAHDNNDGSVGRAAPWRPVSEIAMFEQPSAVDLPPGDADCTESADQSFSGVIEPVFHDLPDMIREQADAGDTAETTAAVVNQNYSMALCDFDSGIDFTAGAHDSGMERATPWTPMSEAALFEQQGPPLAPAAVVDLPPGNDDCADHQSSYGDMIVLPSEQAGAGGGAETTEALFDQPVPPLAADCANQGSYGVIDPVFRDLADLIVLPPEQADAMDGEAAPAWCDFDFPENIDEALSYVDFTAGAHADNDGGVSETAMFEQPGSPPQHDPLLMDADGAGQSSSSGALIDTVFGDHAEPIVLPLEQADTGGGAAAAVNLMDKQKYSSSSMDGEEAPAWCDSDFPESIDEVLSYVDFSTDGASCDFSMDELFDLAD More

Event Type

Chromosome

Start

End

Strand

Alternative mRNAs

Total mRNAs

Source

Expression

	Leaf	Root	Panicle
FPKM	0.0	0.0	0.0

Homologues

Genome & Annotation	Homologs	Type	Expression(FPKM)
Genome & Annotation	Homologs	Type	Leaf	Root	Panicle
Nipponbare \| IRGSP 1.0 \| Gramene(+IsoSeq)	OsNip_07g0456900	RBH	0.0	0.0	0.0
Nipponbare \| IRGSP 1.0 \| MSU	LOC_Os07g27330	RBH	0.0	0.0	0.0
Nipponbare \| IRGSP 1.0 \| RAP-db	Os07g0456900	RBH	None	None	None
Azucena \| AzucenaRS1 \| Gramene(+IsoSeq)	OsAzu_07g0013520	RBH	0.0	0.0	0.0
KETAN NANGKA \| Os128077RS1 \| Gramene(+IsoSeq)	OsKeNa_07g0013410	RBH	0.0	0.0	0.0
CHAO MEO \| Os132278RS1 \| Gramene(+IsoSeq)	OsCMeo_07g0013380	RBH	0.0	0.0	0.0
ARC 10497 \| Os117425RS1 \| Gramene(+IsoSeq)	OsARC_07g0013290	RBH	0.0	0.0	None
PR 106 \| Os127742RS1 \| Gramene(+IsoSeq)	OsPr106_07g0013190	RBH	0.0	0.0	0.0
Minghui 63 \| MH63RS3 \| HZAU	OsMH63_07G0264100	RBH	0	0.010431	0.008822
IR 64 \| OsIR64RS1 \| Gramene(+IsoSeq)	NA	NA	NA	NA	NA
Zhenshan 97 \| ZS97RS3 \| HZAU	OsZS97_07G0269800	RBH	0	0.0490455	0.0280475
LIMA \| Os127564RS1 \| Gramene(+IsoSeq)	OsLima_07g0013150	RBH	0.0	0.0	None
KHAO YAI GUANG \| Os127518RS1 \| Gramene(+IsoSeq)	OsKYG_07g0013220	RBH	0.0	0.0	None
GOBOL SAIL \| Os132424RS1 \| Gramene(+IsoSeq)	OsGoSa_07g0013250	RBH	0.0	0.0	None
LIU XU \| Os125827RS1 \| Gramene(+IsoSeq)	OsLiXu_07g0013450	RBH	0.0	0.0	0.0
LARHA MUGAD \| Os125619RS1 \| Gramene(+IsoSeq)	OsLaMu_07g0013270	RBH	0.0	0.0	None
N22 \| OsN22RS2 \| Gramene(+IsoSeq)	OsN22_07G013220	RBH	0.0	0.0	0.0
NATEL BORO \| Os127652RS1 \| Gramene(+IsoSeq)	OsNaBo_07g0013080	RBH	0.0	0.0	0.0

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National Key Laboratory of Crop Genetic Improvement

Huazhong Agricultural University

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