Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsIR64_06g0013340 | OGI:06019220 | 16/16 | IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | Chr06:12839401-12843109 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ACACACCACACTCCCCGCACTCACGCTAGTCTAGTATAGTACCCCCAAAGCTCATCATCATCACCACCACCTTTCCTCCTCCTCCCCCCATTGCTTCGTCTCGCGCCGGATCGATCCAGCTGCCGCCGCGTTCCGATCCCCTCTGCTCTGGCTTGCTGATAGATCGATCGATCGATGAAGCCCGCCGGTGGGAGGAGCAAGGACGGCGGCGGCGGCGGGGCGGCATTGCTCGGCGGCGGCGGCGTCACCTGCTTCGACGTCAAGTCCTTCGTCGCCTCCCTCGCGCTCCTCACCCTCATCATGGCGCTCTGGCAGCTCCACCCCTACCAGCCCCTCGTCCTCCTCCCCGCCGCCCTCTCCTCCTCCCCATGCCCCCTCCTCCCCCGCTCACCCACCTCTGGTATTGCCGTTTCCTTCGTCTCCACCGCCGCTGCCACCAACTCGACTGACACCGCCACGGTCCCAACCACCACCGCCGCCGCGAGGGTGGCGGCGACGACGAGGCCGACCCTGCCCGCGCGGCAGCGGGAGCGGGACCCAAACAAGCGGGAGCTCCGTCCGTACGGCACGGCGGCGGCGCTGTTCGTCCAGATGGGCGCGTACCGGGGCGGCCCGCGCACGTTCGCCGTCGTCGGGCTGGCATCCAAGCCAGCGCACGTCTTCAGCAACCCTTACTTCAAGTGCGAGTGGCTGCCCAACGCTCCCGCCGGCGCGCCGCCGGTCCGGACCAAGGCCTACAAGATGCTCCCGGACTGGGGCTACGGCCGCGTCTACACCGTCGTCGTCGTCAACTGCACCTTCCCCTCCAACCCCAACGCCGACAACCTCGGCGGTAAGCTCCTCGTCCACGCCTACTACTCCACCGCCTCCCGCCGCTACGAGCGCTTCGTCGCCCTCGAGGAGGCACCGGGCTCCTACGACGACGCTCGATTCCGGCCGCCCTTCGCTTACGACTACCTCTACTGCGGCTCATCCCTCTACGGCAACATAAGCTCCGTCCGCATGCGGGAGTGGCTCGCCTACCACGCCCGCTTCTTCGGGCCGAGGTCCCACTTCGTCCTCCACGACGCCGGCGGCGTGACACCGGAGGTGAGGGCGGTGCTGGATCCGTGGGTCAGCGCCGGCCGCGTCACCGTCCAGGACATCAGGGCGCAGGAGGATTACGATGGCTACTACTACAACCAGTTCCTCGTCGTCAACGACTGCCTCCACCGCTACCGGCACGCCGCGAACTGGACCTTCTTCTTCGACGTCGACGAGTACATCTACCTCCCCGACGGCCGCGCGCTGGAGGACGTGCTCGCCCAGCTCCAGCCCTACACGCAGTTCACCATCGAGCAGAACCCCATGTCCAGCAAGCTCTGCATCGATGATCCGACCGAGGACTACTCGAGGTTTGCATCTTTTTTCTTGCCTAATTTTGCATTTCCCTATGTTAATTGTAGGTCCAATTGTTTATGCCATGCTATTTCAGTGGGAATCCAACTAGATTCGCGCAATAGATATACAATACTGCAATTGGCATATGAAATTTGTTCTTTCCTTGAGGGCTTGGTATTCTTTGTAGAGATAAGTAAGTGCCACAAACGTAGTAGTACATTGCTTCTCCAGTCATTGTCAATTTGTTATTAATCAATCCTAACAGCATATACTTGAAACAGCTATAAGAGAATAGAGTCAAGAGACAAGTATTTGTTTATGTAGTAGGTTGTTTGGGCAGTGTGAGTGTGTGACTCCCTTGGTTCCTGCATGATTGAAGGCACTTTGGCCCTGCACCCTGGTCCATTGCTGTAACATATTTGTTGGATTTCCTGAATTGAACTAATGCCGGGAATTGGGGTTCCGTCATTTGCTTTGCATCAAGGAGATTGTCTCTACATTTCATTCTTACTTCAAATGGGCGTTACCACTTACCAATAAGGATAATTCATGCCTAGATGGATGATATATAAGTAGAGTACCATGAAAATGACAAGTCTATGTGAAGAATATGGATGTTATAAACCACTAGTATTTTGATGAAAAATAGAAATCCGTTGAAAAACAATCTGGTTGGATCTTTGGAAAGAGAAGGGGTGTGGCACCCAGTTGGGAATACTTCTGTTGAGCTGGAAGGGCATGGGTTGATGAGTGCATGACTGGTAGGGAACTCACAATAAACCTGATGATCATTTCTGTGTTATTCCAACGGCTACAGTTCCATTCTTGCTGTATAGTTTTACAACCGCTCAAGCAAGGCATCACAGGTGTGAGATAATGCTGGTGGGGGAGAAATGAGAAACTTCCTCACAACCATAGTGTTTCCCACTTCTGTAGGCCTATCATTCTGTTGAGAACAGAAATTGATTTATTTGTTGGTGATGAGACAACAAAAGCTGCTACTTATCCATTTTCCCAAGTATTTACTAAAATATTTTATTTACTTAGTGGCAATAAAAGCTTCTCACCTTTTTTTTTTCTTTGTTGAACCTCAGAGTAGTCTTATGAACTTCTCTGTTATCTGTCTTAGATAGCTGTGATTTTTCTTTCAGACATAGCATTTTTGTAACAAAGGGTTGTAACCCGATAAGAATGAACCCAAGTACCCAACCAGCAAGGGTAATTGCCATGGTTCTTGTTGATGTCAAAAGTCAAGACAATAATGAGTATGATTGTGTGATTTTGTACTTTTGTAGCTCAATGTCTTTGTAGTTTACAGTGACAGTAGTTTCAATTAGAAACTACTGCCTGTGGCTGTTTGTCAGTTTTGAGTTAGCACATCATTTCACGAGCAAAGAATCTCTGCATCAGTGCATTTAAGGTAGAGGGTTATTTGTGTCTCCTTTGGCCTTGATTCTTGATGTTTATTCTGATGGTGCCATTGCTGACACATGTTATATGTCATTGGTCTTCAGGGAATGGGGCTTTGAGAAACTTGTCTTCCGCAATTCAATTACCGGAGTGAGGCGTGATCGGAAATATGCAATCCAAGCACGGAATGCATACTCCACTGGTGTGCACATGTCGCAAAATGTGTATGGGAGGACAACTCACAAGACAGAAAGCTTGATAAGATACTACCACTATCATAATTCTATCAATGTCATGGGGGAGCCCTGCCAGAAATTCGTGCCGAAACCCGCCAATGGCAGTAAGGTAATGTTCGAGGGGATACCATACGTCTACGATGATAACATGAAGCGCTTGGCAGGGGAGATCAGACGCTTTGAGAAGCAGACGATTGGGGATGTCCATACATAGCATCTGGATGCAAAACTTTGCTGGTACATATATGATTTTATTCTTTCGGACGCCGTCGGCGGTGTCCACCTGTTGCCGTCTGTTCTGTGCTTCAAGCCGCAACTCTGAGAATCAGAGGGAGAGGATCTAACTCCAGTGTCCAAGCAGCGCTATAAAGTTATGGTTCTCTTCAGCATTCTCCTCTTCGTGCAGGGGGCAACACGCCTTTGTGGCTCAATATCCTTTCTTTCCTTTGTTCCTTTCCCTTCTTCTCCCTAGTGTTGTGCTCCAATCTCTTTATAGATTTGTGCTTATTAGACTGACAGTGTGCCTTTATCAGATTCTTCTCATCTCCTATTGGGGGCATTGTAAAGTTTGTCTCATTGTCTGCTAACTTAATGGAAGGTTGGATCTTATATAGTACTAGTATATGTGTGCAACAATTGTTCAAAGTGCATAAAGAGGGAGAATCATTTTCGTTTTGATTTTT
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| CDS seq | ATGAAGCCCGCCGGTGGGAGGAGCAAGGACGGCGGCGGCGGCGGGGCGGCATTGCTCGGCGGCGGCGGCGTCACCTGCTTCGACGTCAAGTCCTTCGTCGCCTCCCTCGCGCTCCTCACCCTCATCATGGCGCTCTGGCAGCTCCACCCCTACCAGCCCCTCGTCCTCCTCCCCGCCGCCCTCTCCTCCTCCCCATGCCCCCTCCTCCCCCGCTCACCCACCTCTGGTATTGCCGTTTCCTTCGTCTCCACCGCCGCTGCCACCAACTCGACTGACACCGCCACGGTCCCAACCACCACCGCCGCCGCGAGGGTGGCGGCGACGACGAGGCCGACCCTGCCCGCGCGGCAGCGGGAGCGGGACCCAAACAAGCGGGAGCTCCGTCCGTACGGCACGGCGGCGGCGCTGTTCGTCCAGATGGGCGCGTACCGGGGCGGCCCGCGCACGTTCGCCGTCGTCGGGCTGGCATCCAAGCCAGCGCACGTCTTCAGCAACCCTTACTTCAAGTGCGAGTGGCTGCCCAACGCTCCCGCCGGCGCGCCGCCGGTCCGGACCAAGGCCTACAAGATGCTCCCGGACTGGGGCTACGGCCGCGTCTACACCGTCGTCGTCGTCAACTGCACCTTCCCCTCCAACCCCAACGCCGACAACCTCGGCGGTAAGCTCCTCGTCCACGCCTACTACTCCACCGCCTCCCGCCGCTACGAGCGCTTCGTCGCCCTCGAGGAGGCACCGGGCTCCTACGACGACGCTCGATTCCGGCCGCCCTTCGCTTACGACTACCTCTACTGCGGCTCATCCCTCTACGGCAACATAAGCTCCGTCCGCATGCGGGAGTGGCTCGCCTACCACGCCCGCTTCTTCGGGCCGAGGTCCCACTTCGTCCTCCACGACGCCGGCGGCGTGACACCGGAGGTGAGGGCGGTGCTGGATCCGTGGGTCAGCGCCGGCCGCGTCACCGTCCAGGACATCAGGGCGCAGGAGGATTACGATGGCTACTACTACAACCAGTTCCTCGTCGTCAACGACTGCCTCCACCGCTACCGGCACGCCGCGAACTGGACCTTCTTCTTCGACGTCGACGAGTACATCTACCTCCCCGACGGCCGCGCGCTGGAGGACGTGCTCGCCCAGCTCCAGCCCTACACGCAGTTCACCATCGAGCAGAACCCCATGTCCAGCAAGCTCTGCATCGATGATCCGACCGAGGACTACTCGAGGGAATGGGGCTTTGAGAAACTTGTCTTCCGCAATTCAATTACCGGAGTGAGGCGTGATCGGAAATATGCAATCCAAGCACGGAATGCATACTCCACTGGTGTGCACATGTCGCAAAATGTGTATGGGAGGACAACTCACAAGACAGAAAGCTTGATAAGATACTACCACTATCATAATTCTATCAATGTCATGGGGGAGCCCTGCCAGAAATTCGTGCCGAAACCCGCCAATGGCAGTAAGGTAATGTTCGAGGGGATACCATACGTCTACGATGATAACATGAAGCGCTTGGCAGGGGAGATCAGACGCTTTGAGAAGCAGACGATTGGGGATGTCCATACATAG
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| Protein seq | MKPAGGRSKDGGGGGAALLGGGGVTCFDVKSFVASLALLTLIMALWQLHPYQPLVLLPAALSSSPCPLLPRSPTSGIAVSFVSTAAATNSTDTATVPTTTAAARVAATTRPTLPARQRERDPNKRELRPYGTAAALFVQMGAYRGGPRTFAVVGLASKPAHVFSNPYFKCEWLPNAPAGAPPVRTKAYKMLPDWGYGRVYTVVVVNCTFPSNPNADNLGGKLLVHAYYSTASRRYERFVALEEAPGSYDDARFRPPFAYDYLYCGSSLYGNISSVRMREWLAYHARFFGPRSHFVLHDAGGVTPEVRAVLDPWVSAGRVTVQDIRAQEDYDGYYYNQFLVVNDCLHRYRHAANWTFFFDVDEYIYLPDGRALEDVLAQLQPYTQFTIEQNPMSSKLCIDDPTEDYSREWGFEKLVFRNSITGVRRDRKYAIQARNAYSTGVHMSQNVYGRTTHKTESLIRYYHYHNSINVMGEPCQKFVPKPANGSKVMFEGIPYVYDDNMKRLAGEIRRFEKQTIGDVHT |
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| Function | Galactan beta-1,4-galactosyltransferase GALS1 [UniProtKB/Swiss-Prot:O22807] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsIR64_06g0013340 | OsIR64_06g0013340.01 | Chr06 | 12839401 | 12843109 | + | NAM | ||
| CDS seq | ATGAAGCCCGCCGGTGGGAGGAGCAAGGACGGCGGCGGCGGCGGGGCGGCATTGCTCGGCGGCGGCGGCGTCACCTGCTTCGACGTCAAGTCCTTCGTCGCCTCCCTCGCGCTCCTCACCCTCATCATGGCGCTCTGGCAGCTCCACCCCTACCAGCCCCTCGTCCTCCTCCCCGCCGCCCTCTCCTCCTCCCCATGCCCCCTCCTCCCCCGCTCACCCACCTCTGGTATTGCCGTTTCCTTCGTCTCCACCGCCGCTGCCACCAACTCGACTGACACCGCCACGGTCCCAACCACCACCGCCGCCGCGAGGGTGGCGGCGACGACGAGGCCGACCCTGCCCGCGCGGCAGCGGGAGCGGGACCCAAACAAGCGGGAGCTCCGTCCGTACGGCACGGCGGCGGCGCTGTTCGTCCAGATGGGCGCGTACCGGGGCGGCCCGCGCACGTTCGCCGTCGTCGGGCTGGCATCCAAGCCAGCGCACGTCTTCAGCAACCCTTACTTCAAGTGCGAGTGGCTGCCCAACGCTCCCGCCGGCGCGCCGCCGGTCCGGACCAAGGCCTACAAGATGCTCCCGGACTGGGGCTACGGCCGCGTCTACACCGTCGTCGTCGTCAACTGCACCTTCCCCTCCAACCCCAACGCCGACAACCTCGGCGGTAAGCTCCTCGTCCACGCCTACTACTCCACCGCCTCCCGCCGCTACGAGCGCTTCGTCGCCCTCGAGGAGGCACCGGGCTCCTACGACGACGCTCGATTCCGGCCGCCCTTCGCTTACGACTACCTCTACTGCGGCTCATCCCTCTACGGCAACATAAGCTCCGTCCGCATGCGGGAGTGGCTCGCCTACCACGCCCGCTTCTTCGGGCCGAGGTCCCACTTCGTCCTCCACGACGCCGGCGGCGTGACACCGGAGGTGAGGGCGGTGCTGGATCCGTGGGTCAGCGCCGGCCGCGTCACCGTCCAGGACATCAGGGCGCAGGAGGATTACGATGGCTACTACTACAACCAGTTCCTCGTCGTCAACGACTGCCTCCACCGCTACCGGCACGCCGCGAACTGGACCTTCTTCTTCGACGTCGACGAGTACATCTACCTCCCCGACGGCCGCGCGCTGGAGGACGTGCTCGCCCAGCTCCAGCCCTACACGCAGTTCACCATCGAGCAGAACCCCATGTCCAGCAAGCTCTGCATCGATGATCCGACCGAGGACTACTCGAGGGAATGGGGCTTTGAGAAACTTGTCTTCCGCAATTCAATTACCGGAGTGAGGCGTGATCGGAAATATGCAATCCAAGCACGGAATGCATACTCCACTGGTGTGCACATGTCGCAAAATGTGTATGGGAGGACAACTCACAAGACAGAAAGCTTGATAAGATACTACCACTATCATAATTCTATCAATGTCATGGGGGAGCCCTGCCAGAAATTCGTGCCGAAACCCGCCAATGGCAGTAAGGTAATGTTCGAGGGGATACCATACGTCTACGATGATAACATGAAGCGCTTGGCAGGGGAGATCAGACGCTTTGAGAAGCAGACGATTGGGGATGTCCATACATAG
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| Protein seq | MKPAGGRSKDGGGGGAALLGGGGVTCFDVKSFVASLALLTLIMALWQLHPYQPLVLLPAALSSSPCPLLPRSPTSGIAVSFVSTAAATNSTDTATVPTTTAAARVAATTRPTLPARQRERDPNKRELRPYGTAAALFVQMGAYRGGPRTFAVVGLASKPAHVFSNPYFKCEWLPNAPAGAPPVRTKAYKMLPDWGYGRVYTVVVVNCTFPSNPNADNLGGKLLVHAYYSTASRRYERFVALEEAPGSYDDARFRPPFAYDYLYCGSSLYGNISSVRMREWLAYHARFFGPRSHFVLHDAGGVTPEVRAVLDPWVSAGRVTVQDIRAQEDYDGYYYNQFLVVNDCLHRYRHAANWTFFFDVDEYIYLPDGRALEDVLAQLQPYTQFTIEQNPMSSKLCIDDPTEDYSREWGFEKLVFRNSITGVRRDRKYAIQARNAYSTGVHMSQNVYGRTTHKTESLIRYYHYHNSINVMGEPCQKFVPKPANGSKVMFEGIPYVYDDNMKRLAGEIRRFEKQTIGDVHT
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.143394 | 0.222984 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_06g0328800 | RBH | 0.000000 | 0.0 | 0.855996 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os06g22330 | RBH | 0.000000 | 0.0 | 0.347453 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os06g0328800 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_06g0013800 | RBH | 0.0 | 1.191861 | 4.996709 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_06g0013630 | RBH | 0.0 | 1.594585 | 0.528479 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_06g0013750 | RBH | 0.0 | 1.513893 | 2.086182 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_06g0013730 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_06g0013840 | RBH | 0.776749 | 0.0 | 6.790006 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_06G0211900 | RBH | 1.7574235 | 4.0467585 | 2.976914 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_02g0030540 | RBH | 0.0 | 0.525509 | 0.409007 |
| Zhenshan 97 | ZS97RS3 | HZAU | NA | NA | NA | NA | NA |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_06g0013860 | RBH | 0.0 | 0.000000 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_06g0013790 | RBH | 0.0 | 4.093757 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_06g0013510 | RBH | 1.162748 | 0.000000 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_06g0014120 | RBH | 0.0 | 0.324211 | 0.242247 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_06g0013640 | RBH | 0.0 | 2.514355 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_06G013500 | RBH | 0.070975 | 0.0 | 1.303166 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_06g0013800 | RBH | 0.0 | 0.0 | 0.360881 |
