Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsIR64_05g0027960 | OGI:05078630 | 16/16 | IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | Chr05:30035401-30038219 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ATGGCTGAGGAAACTGGCAACGACAACCAGGTGGTTCAAGGTAACGAGATTGTCCAAAGCAATGAGGAAGCTCAAGCTGAGGAAGTTCAGGGTGATGAATTGGTCCCTGCTGAGGACTTAACTCAAGGTGACGAGGTCCAAGGGAATGAATTGGTCAGTGCTGAGATCAGTACCCCTCCAACATTAAGGCGCCGTAGGAAGAAGTCTCTAGTGTGGGAGCACTTCACTATTGAAGCTGTCTCTGGAGGGGCTACACGGGCGTGCTGCAAACTGTGCAAGCAAACTTTTGCTTACAGCTCTGGTTCAAAAATTGCGGGTACTAGCCATCTCAAGAGGCACATTACGTTGGGTTCATGCCCTAAAATTAAGAACCAAGAGCACAAGCTAGCACTGACTCCAGCTGGAGGGACTGACAATGATGGTGAGGGTACTGTGGAGCGCCCATCTAAGAGGCGTTACAGATATACTGGTTATGCAAATGCTGCTTTTGATCAAGACCGCAGTTGCTCATGTCTGGCAAAGATGATAATTTTGCATGACTACCCACTTCACATTGTTCAACAGCCAGCGTTCACTACCTTTATTGACAGTCTGCAGCCACGTTTCAGGGTTGTAGATGTTGAGACAATGGAGGGGGAGGTGTATGCTGTTTACCAGAAAGAAAAGGAAAACCTCACGCAAGCATTCAGCACTATGCCTGGAAGGATCAGCCTCACCATTGGATTGTGGACAACTAGCCAAACTCTTGGCTATGTTTCACTTGCTGGGCAGTTTATTGACTCTGAGTGGAAGATACATCGAAGAATGCTAAACTTCATGATGGTGTCTTCTCCTCATTCAGAGAATGCACTTAGTGAAGCTATTAGTGCAAGCCTTTCGGACTGGAATATGAAGGACAAACTGTTCACCATCACATTGGACAATGATTGCTCATCACATGATATATACAGTGCAAATCTGAGGGATTATCTCTCCAACAAGAACAACCTCATGCTCAAGGGCCAACTGTTTGTTGTAAGGTGTTATGCCCATATCCTGAATGCAGTTGCTCAGGATGTCATTGCTTCAATCCATGGTGTCATCTACAATATCCGTGAAAGCATCAAGTTCATAAAAGCTTCTCCTACTCGTGAGGAGAAGTTTGCAGAGATTGCTCTGCAGCTAGAGATCCCAAGTACCAAGACCCTTTGTCTGGATGTTACGACTCAGTGGAACACTACCTATCTCATGCTGCTGGCTGCCTTGGATTATAAGCAGGCCTTTTCTACTCTAGAGACAAGTGATGACAACTACAACGAGGCACCGTCCGCTGAGGACTGGAAAAAAGTTGAGGCTGCCTGCAATTACTTGAAGCTATTGTATGACTCAGCACATAGCATCATGGCTGCAGCAAATCCAACTTCAAATCTCTTTTTCCATGAGGCATGGAAACTTCAGCTAGAGCTGTCAAATGCTACAGGGCATGAAGACCCTGTTTTCAGCAGCATTGCCAAGGATATGCACGAGAGGTTTGACAAGTACTGGAAAGATTGCAACCTTGTGTTAGCTATTGCTGTTGTGATGGATCCACGCTTCAAGATGAAGCTTGTTGAGTTCAGCTACTCGAAAATTTATGGTGTTGAAGCTGCGAAGTATGTTAAGGTGGTGGATGACGCTGTTCATGAGCTTTACAAGGAGTATGTTGCACAGCCCCTCCCCTTGACGCCAGCCTATGTTGAGCAAGGGGAAGGTAATAATGCACCTGCTAGCGAGAATAGTACTCAAACAACTGCTCCTTCGACCGGCGATGGACTTGTGGACTTTGATATGTACCTTTCTGAGATAGCTACAAGCCAGCCAACAAAATCTGAACTGGAACAGTACCTTGATGAGTCCCTCACTCCGCGCATCCAGGAATTCGACATTCTGAACTGGTGGAAGCTCAACACTCTCAAGTTCCCTACTCTCTCAAAGATGGCCCGGGATATCTTGGCCATTCCGATGTCGATGGTGAGCAGCGGCAACTCTATTTTCTCTGCTGGAACAGGAACTCGCATGCTTGATGACTACAGAAGCTCATTGCGTCCAGAAATTGTGGAGGCGCTCTTCTGCGCCAAAGACTGGCTTCAGTATTCACCAGCTACCCCGGAGGCGCCGAGTACCGCGCTGGTCAAGGTGGATGCACCATAGGATCGCCGTGATTCCTACCAATGGTACCTATTTGTGAAGTTAACTGCTAGGCGTATTTTAGGCAGGGACTATGAACTGATTGTGATCTGAGCTTATCCTCCTAGGGTGTAATTTGTTGTATCGAACTCTGTTAACTCGTTCATTCTGTAGTATGCCATCAGAGTTGTACCTGATATTGCATGTAGTGTGCGCGCTGGCTGCATAATATTTATCAGCTGGTGCCTTATGTTTGTACTTCCCCTCATTATAATCCATTGTAGCATGTGATTGTTCTGTGCCTTTGTGATATGTCACATAGCTAAGGCAGCGTCGACACCTGCGTGCGGCCGTAGCCGAACGAGGCGTCCATCCCTGAGTCCGGCGAGCCCGGCATGGCGCTGGACAATGGACAAGAGCTTCGGCTTCTCCAAGCACTTCGCCGCCAAGTACAAGTTTGGTTACACCTGCGCTGCCACCTGCAGAAGGGCGAGTTCAAGGGCGACGACGGTGACGTCGCCTTCAAGGTCAATCCAATCCCTTCTTTCTGTCCAGTTCACGACTTGTTCTCCTTCGCTGAGGTTTTGAGTCAATTTTCATGTTTATTTTCCTCGCTTGGGTTTAATTAATTAACACTTAAATCTTCTCTTGCATTGTTTAGTGTTTACACCTGA
More
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| CDS seq | ATGGCTGAGGAAACTGGCAACGACAACCAGGTGGTTCAAGGTAACGAGATTGTCCAAAGCAATGAGGAAGCTCAAGCTGAGGAAGTTCAGGGTGATGAATTGGTCCCTGCTGAGGACTTAACTCAAGCTAAGGCAGCGTCGACACCTGCGTGCGGCCGTAGCCGAACGAGGCGTCCATCCCTGAGTCCGGCGAGCCCGGCATGGCGCTGGACAATGGACAAGAGCTTCGGCTTCTCCAAGCACTTCGCCGCCAAGTACAAGTTTGGTTACACCTGCGCTGCCACCTGCAGAAGGGCGAGTTCAAGGGCGACGACGGTGACGTCGCCTTCAAGTGTTTACACCTGA |
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| Protein seq | MAEETGNDNQVVQGNEIVQSNEEAQAEEVQGDELVPAEDLTQAKAASTPACGRSRTRRPSLSPASPAWRWTMDKSFGFSKHFAAKYKFGYTCAATCRRASSRATTVTSPSSVYT |
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| Function | Zinc finger BED domain-containing protein RICESLEEPER 2 [UniProtKB/Swiss-Prot:Q6AVI0] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsIR64_05g0027960 | OsIR64_05g0027960.01 | Chr05 | 30035401 | 30038219 | + | NAM | ||
| CDS seq | ATGGCTGAGGAAACTGGCAACGACAACCAGGTGGTTCAAGGTAACGAGATTGTCCAAAGCAATGAGGAAGCTCAAGCTGAGGAAGTTCAGGGTGATGAATTGGTCCCTGCTGAGGACTTAACTCAAGCTAAGGCAGCGTCGACACCTGCGTGCGGCCGTAGCCGAACGAGGCGTCCATCCCTGAGTCCGGCGAGCCCGGCATGGCGCTGGACAATGGACAAGAGCTTCGGCTTCTCCAAGCACTTCGCCGCCAAGTACAAGTTTGGTTACACCTGCGCTGCCACCTGCAGAAGGGCGAGTTCAAGGGCGACGACGGTGACGTCGCCTTCAAGTGTTTACACCTGA
More
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| Protein seq | MAEETGNDNQVVQGNEIVQSNEEAQAEEVQGDELVPAEDLTQAKAASTPACGRSRTRRPSLSPASPAWRWTMDKSFGFSKHFAAKYKFGYTCAATCRRASSRATTVTSPSSVYT |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.236398 | 0.000000 | 0.521476 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_05g0028490 | RBH | 1.581802 | 10.798242 | 7.246579 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_05g0028280 | RBH | 2.474766 | 12.696512 | 14.353620 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_05g0028340 | RBH | 0.475541 | 0.286392 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_05g0028230 | RBH | 1.359025 | 2.740558 | 3.289575 |
| Minghui 63 | MH63RS3 | HZAU | NA | NA | NA | NA | NA |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_05G0466900 | RBH | 17.326869 | 25.055609 | 52.5724335 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_05g0028080 | RBH | 0.181022 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_05g0027950 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_05g0028190 | RBH | 0.0 | 0.000000 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_05g0028200 | RBH | 1.212505 | 0.659104 | 1.541720 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_05g0028260 | RBH | 0.000000 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_05G027740 | RBH | 0.955836 | 2.556165 | 3.685810 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_05g0028270 | RBH | 3.857745 | 19.563164 | 5.634315 |
