Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsIR64_05g0020140 | OGI:05063400 | 13/16 | IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | Chr05:24541055-24541633 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ATGACGACGGCATTTCTCGAAAGCGGCAAAGATGGTGGTCAAGATGGGCTTAGCGCGCTCCCAGACGACGTCATTGTCGGAGGCCTAGGCCTGCGGGACATTGTCAGAGCGAGCATCCTCTCCCGGCGGTAGAGACGCGTCCCTCATCTGCTCTCCCATAGGCTCGACATCGATGTCGCAGACTTCATGCCGCATGACCATGGCGACTCCTCCTCGTCGGACGACAGACACCGGATCATGTCGGCGTATGCTAACGCGACAAGGTGGTTGTTGGCTCCAAGCGCGGAGAGAGCCATCAAGAGCGTGTCCCTCAGCTTCCTCATCGCGGAGCCTTACCTGCTGCACGCCGTTGCCTGCGCCGTCGACGACCTCCTCCTTGACGGCAGCAACAGCAGCCTGGAGAGCCTTGAGATGGACATGTGGACCGACCGGGTCGCTGCCGGCGCCGCGACCCTCGAACAGAGGCGCCTCTTCGGACAACGCTTCCAGTCACTCTTCGACGCTTACCCGGCCCCGTTCAGGTGCCTCACCAGCCTCACCTTGCAAAACCTTCGGCTTCGAGGAGGACGCGATTGCTAG
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| CDS seq | ATGACGACGGCATTTCTCGAAAGCGGCAAAGATGGTGGTCAAGATGGGCTTAGCGCGCTCCCAGACGACGTCATTGTCGGAGGCCTAGGCCTGCGGGACATTGTCAGAGCGAGCATCCTCTCCCGGCGGCTCGACATCGATGTCGCAGACTTCATGCCGCATGACCATGGCGACTCCTCCTCGTCGGACGACAGACACCGGATCATGTCGGCGTATGCTAACGCGACAAGGTGGTTGTTGGCTCCAAGCGCGGAGAGAGCCATCAAGAGCGTGTCCCTCAGCTTCCTCATCGCGGAGCCTTACCTGCTGCACGCCGTTGCCTGCGCCGTCGACGACCTCCTCCTTGACGGCAGCAACAGCAGCCTGGAGAGCCTTGAGATGGACATGTGGACCGACCGGGTCGCTGCCGGCGCCGCGACCCTCGAACAGAGGCGCCTCTTCGGACAACGCTTCCAGTCACTCTTCGACGCTTACCCGGCCCCGTTCAGGTGCCTCACCAGCCTCACCTTGCAAAACCTTCGGCTTCGAGGAGGACGCGATTGCTAG
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| Protein seq | MTTAFLESGKDGGQDGLSALPDDVIVGGLGLRDIVRASILSRRLDIDVADFMPHDHGDSSSSDDRHRIMSAYANATRWLLAPSAERAIKSVSLSFLIAEPYLLHAVACAVDDLLLDGSNSSLESLEMDMWTDRVAAGAATLEQRRLFGQRFQSLFDAYPAPFRCLTSLTLQNLRLRGGRDC |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsIR64_05g0020140 | OsIR64_05g0020140.01 | Chr05 | 24541055 | 24541633 | + | NAM | ||
| CDS seq | ATGACGACGGCATTTCTCGAAAGCGGCAAAGATGGTGGTCAAGATGGGCTTAGCGCGCTCCCAGACGACGTCATTGTCGGAGGCCTAGGCCTGCGGGACATTGTCAGAGCGAGCATCCTCTCCCGGCGGCTCGACATCGATGTCGCAGACTTCATGCCGCATGACCATGGCGACTCCTCCTCGTCGGACGACAGACACCGGATCATGTCGGCGTATGCTAACGCGACAAGGTGGTTGTTGGCTCCAAGCGCGGAGAGAGCCATCAAGAGCGTGTCCCTCAGCTTCCTCATCGCGGAGCCTTACCTGCTGCACGCCGTTGCCTGCGCCGTCGACGACCTCCTCCTTGACGGCAGCAACAGCAGCCTGGAGAGCCTTGAGATGGACATGTGGACCGACCGGGTCGCTGCCGGCGCCGCGACCCTCGAACAGAGGCGCCTCTTCGGACAACGCTTCCAGTCACTCTTCGACGCTTACCCGGCCCCGTTCAGGTGCCTCACCAGCCTCACCTTGCAAAACCTTCGGCTTCGAGGAGGACGCGATTGCTAG
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| Protein seq | MTTAFLESGKDGGQDGLSALPDDVIVGGLGLRDIVRASILSRRLDIDVADFMPHDHGDSSSSDDRHRIMSAYANATRWLLAPSAERAIKSVSLSFLIAEPYLLHAVACAVDDLLLDGSNSSLESLEMDMWTDRVAAGAATLEQRRLFGQRFQSLFDAYPAPFRCLTSLTLQNLRLRGGRDC |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_05g0106900 | SBH | 0.555220 | 0.695425 | 1.932871 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os05g39660 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os05g0106900 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_05g0020590 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_05g0020540 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_05g0020420 | RBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_05g0020420 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_05g0020540 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_05G0360500 | RBH | 0 | 0 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_05G0370200 | SBH | 3.4080935 | 6.0671625 | 6.276104 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_05g0020380 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_05g0020360 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_05g0020440 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_05g0020510 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_05g0020510 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_05G000510 | SBH | 0.0 | 0.0 | 0.260729 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_05g0000560 | SBH | 0.0 | 1.137890 | 0.561856 |
