Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsIR64_05g0004380 | OGI:05009940 | 14/16 | IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | Chr05:3655222-3656049 | ||||||||
| Gene Symbol | FLA9, OsFLA9 | ||||||||||
| DNA seq | TCACATGCCACACCACGCGACAGCCACGGCGACGGCCACGCCGACCAAGCCCCGCCGCACCGTGCCCCGCGCCGCCGCCTCCGACGCCGTCGCCACCGTCGTCGTCGTCGTCCCGGCAGCCGTGTCGGCCGCCGGCGCGTCGGCCACGCCGACGGGGCCGGCCTTCTTCTTGGCCTTGTCCGCCGGCGACGGCGCCGGCGCGGGCACGGGCGGGCCGTAGAGCGCCCACGGCAGCAGCACCTTGTCGACCTGGTAGACGACGAGGCGGTCGCCGGAGTAGAGCGTGTTGTCGACGGTGGCGTTGACGACGCCGGTGGAGATGTTCACGCGGGAGCCCTCGGCGGTGACGTTGAGCGGGTACTTGCCGGCGGCGGTCTCGCCGGCCTGCGTCCGGAGCGGGTTGCTGACGGTGTCGAACTGCGCCATGGGGAGCAGCGCGGACACGACGTGGAACTGCACCAGCGACGTCTTCTGCTGGTCGGAGAGCTTGTTGAGGGTGCCGGTGGGGAGCGCCGCGAACGCGTTGTCCGGCGGCGCGAACACGGTGAGCCCGCCGGAGGACGACGCCTTCCCCTTGATCTGGTTGTTGATCTGCTCGCCGGCCTGCGTCGACTGCAGTAGCTGGAGGAACTTGGTGAACTGACCGGCCTTGGTCAGGATCGCCGTGATCGTCTTCGGCGCCGCCGGCGCCGGCGCCGGCGCAGCCGCCGCCGCCTGCCCGTTCGCCACCGGAGACTCCACCGCCATCACCACCAACATCGCCGCCACGAGGATGGTCGTCGTCGCCGAAGCCGCCATGGATGCCAAACTCTTCTTGGCCACGTGCAT
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| CDS seq | ATGCACGTGGCCAAGAAGAGTTTGGCATCCATGGCGGCTTCGGCGACGACGACCATCCTCGTGGCGGCGATGTTGGTGGTGATGGCGGTGGAGTCTCCGGTGGCGAACGGGCAGGCGGCGGCGGCTGCGCCGGCGCCGGCGCCGGCGGCGCCGAAGACGATCACGGCGATCCTGACCAAGGCCGGTCAGTTCACCAAGTTCCTCCAGCTACTGCAGTCGACGCAGGCCGGCGAGCAGATCAACAACCAGATCAAGGGGAAGGCGTCGTCCTCCGGCGGGCTCACCGTGTTCGCGCCGCCGGACAACGCGTTCGCGGCGCTCCCCACCGGCACCCTCAACAAGCTCTCCGACCAGCAGAAGACGTCGCTGGTGCAGTTCCACGTCGTGTCCGCGCTGCTCCCCATGGCGCAGTTCGACACCGTCAGCAACCCGCTCCGGACGCAGGCCGGCGAGACCGCCGCCGGCAAGTACCCGCTCAACGTCACCGCCGAGGGCTCCCGCGTGAACATCTCCACCGGCGTCGTCAACGCCACCGTCGACAACACGCTCTACTCCGGCGACCGCCTCGTCGTCTACCAGGTCGACAAGGTGCTGCTGCCGTGGGCGCTCTACGGCCCGCCCGTGCCCGCGCCGGCGCCGTCGCCGGCGGACAAGGCCAAGAAGAAGGCCGGCCCCGTCGGCGTGGCCGACGCGCCGGCGGCCGACACGGCTGCCGGGACGACGACGACGACGGTGGCGACGGCGTCGGAGGCGGCGGCGCGGGGCACGGTGCGGCGGGGCTTGGTCGGCGTGGCCGTCGCCGTGGCTGTCGCGTGGTGTGGCATGTGA
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| Protein seq | MHVAKKSLASMAASATTTILVAAMLVVMAVESPVANGQAAAAAPAPAPAAPKTITAILTKAGQFTKFLQLLQSTQAGEQINNQIKGKASSSGGLTVFAPPDNAFAALPTGTLNKLSDQQKTSLVQFHVVSALLPMAQFDTVSNPLRTQAGETAAGKYPLNVTAEGSRVNISTGVVNATVDNTLYSGDRLVVYQVDKVLLPWALYGPPVPAPAPSPADKAKKKAGPVGVADAPAADTAAGTTTTTVATASEAAARGTVRRGLVGVAVAVAVAWCGM |
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| Function | Fasciclin-like arabinogalactan protein 11 [UniProtKB/Swiss-Prot:Q8LEJ6] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsIR64_05g0004380 | OsIR64_05g0004380.01 | Chr05 | 3655222 | 3656049 | - | NAM | ||
| CDS seq | ATGCACGTGGCCAAGAAGAGTTTGGCATCCATGGCGGCTTCGGCGACGACGACCATCCTCGTGGCGGCGATGTTGGTGGTGATGGCGGTGGAGTCTCCGGTGGCGAACGGGCAGGCGGCGGCGGCTGCGCCGGCGCCGGCGCCGGCGGCGCCGAAGACGATCACGGCGATCCTGACCAAGGCCGGTCAGTTCACCAAGTTCCTCCAGCTACTGCAGTCGACGCAGGCCGGCGAGCAGATCAACAACCAGATCAAGGGGAAGGCGTCGTCCTCCGGCGGGCTCACCGTGTTCGCGCCGCCGGACAACGCGTTCGCGGCGCTCCCCACCGGCACCCTCAACAAGCTCTCCGACCAGCAGAAGACGTCGCTGGTGCAGTTCCACGTCGTGTCCGCGCTGCTCCCCATGGCGCAGTTCGACACCGTCAGCAACCCGCTCCGGACGCAGGCCGGCGAGACCGCCGCCGGCAAGTACCCGCTCAACGTCACCGCCGAGGGCTCCCGCGTGAACATCTCCACCGGCGTCGTCAACGCCACCGTCGACAACACGCTCTACTCCGGCGACCGCCTCGTCGTCTACCAGGTCGACAAGGTGCTGCTGCCGTGGGCGCTCTACGGCCCGCCCGTGCCCGCGCCGGCGCCGTCGCCGGCGGACAAGGCCAAGAAGAAGGCCGGCCCCGTCGGCGTGGCCGACGCGCCGGCGGCCGACACGGCTGCCGGGACGACGACGACGACGGTGGCGACGGCGTCGGAGGCGGCGGCGCGGGGCACGGTGCGGCGGGGCTTGGTCGGCGTGGCCGTCGCCGTGGCTGTCGCGTGGTGTGGCATGTGA
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| Protein seq | MHVAKKSLASMAASATTTILVAAMLVVMAVESPVANGQAAAAAPAPAPAAPKTITAILTKAGQFTKFLQLLQSTQAGEQINNQIKGKASSSGGLTVFAPPDNAFAALPTGTLNKLSDQQKTSLVQFHVVSALLPMAQFDTVSNPLRTQAGETAAGKYPLNVTAEGSRVNISTGVVNATVDNTLYSGDRLVVYQVDKVLLPWALYGPPVPAPAPSPADKAKKKAGPVGVADAPAADTAAGTTTTTVATASEAAARGTVRRGLVGVAVAVAVAWCGM
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.289934 | 0.986232 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_05g0163300 | RBH | 0.219159 | 0.0 | 0.267827 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os05g07060 | RBH | 0.146109 | 0.0 | 0.067967 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os05g0163300 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_05g0004500 | RBH | 0.168418 | 0.716397 | 5.985442 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_05g0004550 | RBH | 0.0 | 0.993907 | 0.583867 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_05g0004440 | RBH | 0.0 | 2.999276 | 5.916468 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_05g0004530 | RBH | 0.0 | 0.071240 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_05g0004600 | RBH | 0.0 | 0.0 | 19.517021 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_05G0053200 | RBH | 10.0501315 | 2.0351115 | 0.008911 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0004140 | RBH | 0.209450 | 2.665221 | 0.981718 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_05G0053800 | SBH | 34.035718 | 97.3954505 | 71.67544 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_05g0004510 | RBH | 0.0 | 0.146750 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_05g0004430 | RBH | 0.0 | 3.636520 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_05g0004520 | RBH | 0.0 | 0.943227 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_05g0004540 | RBH | 0.619614 | 0.213149 | 4.515166 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_05g0004600 | SBH | 0.505028 | 7.626354 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_05G004480 | RBH | 0.0 | 0.0 | 4.926473 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_05g0004700 | RBH | 0.0 | 25.793472 | 16.903143 |
