Basic Info |
Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
OsIR64_05g0002800 | OGI:05007020 | 9/16 | IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | Chr05:2466463-2471574 | ||||||||
Gene Symbol | - | ||||||||||
DNA seq | TCAGATTTTACTTTGGTATGTCTTCTGCCTCTTCCTTGGATCTTGGGAAGCTTGTATTATTCCTGCAGATTACAAAAAAAATATTTATGAGAAATTGTTTTTCTTTTACATATCAGTTAATACCTATTAAAATTGACTGAAAATTCTTGTTTTTGTTTCATACTTTTAGTTGATTCAGGCTCTTTGTTGATGTCAGCTTTCTTCTTTTCTTGTTGCTTTGCTTGATTTTGACCAGTGGCTGCAATTACAAAGAAAGAACACATTAATATATATATATATATATATATATATATATATATATATATATATATATATGTATGTATGTATGTATCTATTCTGGCTATTTGTAGCACATGAACATTCTTGCACAACTCATAATTTTTCTTACCTCCTGCTGTTTTCTGTTGGAGTAGTTTTCTGCTTTTGCTTTGCATTAGTGGGCAGTTTTCTATTGTGTGATTTGTTTTGCCACACCGACTGCAGTGGTTTTTGGTCTTCTCTATAATCTTCTCCACTATTCTCCTCTGTCTTACTGATTTTCTGCCCTTTGTGTTAGCTATATCAGGATCTGCTATTTCTTCTTGTTCCACTGTTATTTTTTCTTCTGTTTCATCTGCAGGAACATTGTTCACTGTGTTACTTTGATGATGCGACGAGCTTTCAGGTACATCTTCAAGCATAGCATTTATCTTTCTGTCCAAGTTCTCAATCTCATTTAACATGCACTCATATGTTTCTTTCCTCTTTGATGCCTTTGATGCTATGTTGACTGACTTTCTTGACAGCACATTGAACCTCAACATTGAGCTATTTCCATTGTATATTGGTCTGTCAGAAGTGCTTGTATATTTCCTTTCTTTCTTCCTCCATCTTTCTATGATATACTTCTCAGGAATCTTTTTAATTTCTAGTGCCAACATAACTTTCAGGATATGGCAGCAGAGGATACCATCTTTGGAGAACTTCCCACATATGCAACTGTAGTTTTCTTGTGGTAAGTCAGTAATGACAACATATTTCCTTGGTCTCCACTCTTTCTTTGTTTGATTCAGAGCTATGAACACCTCATATATCTTTCCTTTTTTTATAGTATTCATTTCCATCCTTGTAGATTCTATTAGTTCTTCTTGGAATTTCTCAAATATGCTCAAGTTGTACAATTGCAATGCTTGTTCTTCAATGTAGTTTCTACACCATAGTATATCTGGTCTTTTAGTTCTTGATTCATGATCTTTGCTGTACTCAGTGCTGAATATAGTGTCATTTATGCTTTCATACTCATTCATGAAGCTCATCACACTATGCTTTGGTCCTACACTTCTTTTAAACCTTGCATTTGTGCCCTCACTTAATGCTGTGCTTTGAATGAAGGGGCAGAAGTCAGTCTTGAAATATACAGGCACAAATTGTTCTCTAGTTTTCCACATGTGTTCAAAATATTTGACATTGTGCAAGCTATATTTTTCAATCATTTGAGGCCATAAGCTTTCAAATTCCTCTCTTGTTAAACAATTGTTCACAATGTCCTCAAAATCTTTGTGCAGATCCTTCTTTGTTTTATCTGAAAATGTGCTTCCTGTCTTTTCTCTGCAATTTTTCTTAACATGGAATAGGCAATTTTTGTGCTTTGTTTGTTTAAAAACTTGACGTATCGCAGACCTCATAGCATTGTCTTGATCAGTTATGATAGTCTGGGGATGCTTTTCACTCATTGCTGTCAGAAATGTTTCAAAAACCCACTTGAAAGTCTCTGTTGTTTCATCACCTAGAAAAGCACACCCAAACAAGCAAGTATTTCCATGGCCTGTGATGCCGACAAATGGAGCAAATGGCAGATTGTATTTGTTTGTTTGGTATGTTGTGTCAAAGCTGATAATATCCCCATATTCTGCATACAGCTCAATAGATCTGCCATCAGCCCAGAACATGTTTTTCACTTTGTTTTCCTCATCTAGCTGAAACTTATAATAGAAATCAGGGTCCTCTTGTTCTTTGTTCCTTAGGTAACTTAGTACCTGTTTCATATCAGCATTCCTTGTCTCTGAATTGATTGCTGTACAAACATTGCTAACATCTTTTTTGGTGTAAGGTAATGCTGCTAACCCTCCACGGAGAAAAGACAATATTGCAATCATATTCCTTATTGGTATGTTGCACTCTTTCAAAGTCTTTATCATCTTTTTCTCCTCTTCTGTCATGTTCTTATGTGAGCGAAGAAACTTCTTTTCTGTATTGGGACTAAGTTCATGGTTATGATTGAGCTCAAGCCTTATTATTTTCCACACTTTCCTCTCCTCTCGAACCACCATCACACACTTGCAGTCAGTCTTGATAATCACTTTTGTCTTCCTTCGCTGTTTTGTGTTGCTCTTTTTCTTCTTTTTGCCATCTGAATTTTTGCCATACCTGTAGCAGTTGTATGTGTATTTGGTTACCTCACCTTGTCTTTTCTTGCTTGTTGATTTGTAGTTGTGTGTTTTAACAACTGAGAATCCAGCTTGATAAGCGTAAAAGTTGAAGAAATCATACGCTTGATCAGAAGAATCAAATTGCATATTGATGTGAGGTATGCATCTGCTGTCAACTTCCTTGTGGCCTTCCTCCTCATTTTTCAGGAAATTGTCAATGTCCTCTTCATCTAAATATTCAGCATTTGTAGCTTCTGAAGCATCATTCATTTGAGTGTTGTTCTCATTTGTTTCTTGTCGACTTTCTTGAGCTGTTGTACTATCCATTGATTTGTCCAATACAGCATCATTTGTAAGAATGCCATCATTACTGATCTGAAAAATAAAAATCAGTGCTTATTAAGTCATTTAGCAAACTGTTTTTCAATGATAATTTTTTTTGCACTGTAATCATACCTGAGTATGTGAATTGTTTGAATACAAGTTCAGCCACTGTTGTTGTTCATCAATAGAAGATTCTCCAAGATTGTCGCCAGCAGTATATCTTGGATTTACCTGCATTATATATTTTTTTGCCATTTGTATTAATAAAATTGTTCTTTTTTCAAATAATACTTGTACACACATTTAATTTCAAATTAAAACTTGTACAATCTTAAAATACCTCCAATCTGAATAGCTTGTTGTTTGATTTATTAACTCCTCCATAATTTTCTCCTTTTCATTCTGCACAGATACATAATGTTAGCTTAGTTTAAAATAATACTGAACCGAATAATGAAGCGATGCTTCCTGAAAGTCTAACCTCCGTCAATGGCTCTACAAATGTGTTGTTGTATATTTCATCAAATTCTTTGTAGTAACTCTCTGTTGTTGATACCTGCTAACATAGAATTGCAATTTTTCAGTACCTTACACCTCAATCCCAAAATGCAGATATAGAATATGTTAAATCTGTATCAAGAATTAAGAATTTTTGTATTACCTTTTGATGATATGTTTCTGTTGATTGCATTTGTTCATTTGTTGGTTCTGGAGTAAATCTACTTGTTGTCAAAATCATGGAGTTCTACAAGACATAATGATATAAAATATGTTAGTTTAATATATACAAAATGATGGGATTCTACAAGTCGTAATGATATTTCCTTTTTTTTATATATACAATTGCATTCATTACCTCAAATCCTAGCGGTGTTTGAAGTAGTTTCCTGTATATCTTAGCCCCTGAAAAAACATATGAAATCAATTAGTACAGAAAATCCTTGTCTCCTACATATTAAAATGGAAACAAAATTTTCTTTCTTCAAACACATACATATATTGACTTAGAATACAAACACATTACAGTAGGCTTTGTTGATCTGAACATAGTCTCGTAGCATTGTAATTTTCTAATCCCAGTGTATGAATATGAATTTTTGTATGAATTATACTAAAATTACAGTGCTATATGACTAAAATTACATATGTAAATTTAGTTACATATCACTGTAATTTTAATTTCTCAAAATTACAGTGCTATGAGACTAAATTTACATATGTAAATTTAGTCATATAGCACTGTAATTTTCTACTTCTAGGGTATAAATGTGAATTTGGTAGGCATTTTTTATATTCTGCATGCTGTAGTTTGGAATCTGAAATCAATTTATTTTTTGGTGGCAGGGAAGTGTGTGAGTTTGCAAAATAACAGACTTAAAAGTGCATAATTTAGTGTTGTATAAATTTTGCACTTATAGCTTACTACTGTAATGGCTTAGTATTCTAGTGTTTTATGTGTGGGATTTGCATTGTATAGTAGTTCAGTTTTGGGCTACAAGACTTTGTTTTACTATATATGACATCTCTAGGATTTTGGCAGACAGCTCTAGTCATATAGGACTGTAATTTCTCAAAATTACAGTGCTATGTAACTAAATTTACATATGTAAATTTAGTCATATAGGACTGTAATTTTCTATTTCTAGTGTATGAATGTGAATTTGGTAGGTGCTTTTTAAATCTGCAAGCTGCAGTTTGGAATCTGAAATAAATTTTATTTTTTTTGGGTGGCAGGGAAGTGTGTGAGTAAGCATAATAACAGGCTTAGTCAGCCTACTGTAATGGCTTAGTATACTAGTGTTTTATGTGTGGGATTTGCATTATAGAGTAGTTCAGTTTTGGGCTACAAGACTTTGTTTTACTATATTGTCAAAAGTAGTCAAATTGTTTCAGAGTCAAACTATATTGTTTTTTACAGGTGATTTGGTGCCCATAATTTCTGAGGCTGCTTGTAAATTGTTCTTTGTTTTTAAAATTTTAGGTGTATTTTCTAGGTGAATACATGTGTTTGTGCTGAAATTGAATTCTAGGTGAAATTGTGCTTGTGCTGATCAGGAATTGTTTTTTTCTGAAGGAAATCACCAGATGGAGAACTGGAGTCTGAATGAATGTTTGATGCTGTTTGATGCAATTTTTTAAAGCCATCTGATGCCAGATCTAGTTTTTGAAGTGAGGGCAAAAGATTGCTCAAGCATGTACGACTACAGATGGATCAAGCAAAACTGAGATTATGATGAATCCAGGTAATCCCCTTTTTGTACTGACCTGTTGTTGTGTTGCTGATTTGCTGGTTTTGATTCACCAGCTGCTCATCACCTTGAGTTTGATCGATTTGTTTCATTTTGTCTCTCTTTTTCCTGGTGCTCTCGGTGCTCTCCAT
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CDS seq | ATGGAGAGCACCGAGAGCACCAGGAAAAAGAGAGACAAAATGAAACAAATCGATCAAACTCAAGGTGATGAGCAGCTGGTGAATCAAAACCAGCAAATCAGCAACACAACAACAGGGGCTAAGATATACAGGAAACTACTTCAAACACCGCTAGGATTTGAGGTATCAACAACAGAGAGTTACTACAAAGAATTTGATGAAATATACAACAACACATTTGTAGAGCCATTGACGGAGGTAAATCCAAGATATACTGCTGGCGACAATCTTGGAGAATCTTCTATTGATGAACAACAACAGTGGCTGAACTTGTATGGCAAAAATTCAGATGGCAAAAAGAAGAAAAAGAGCAACACAAAACAGCGAAGGAAGACAAAAGTGATTATCAAGACTGACTGCAAGTGTGTGATGGTGGTTCGAGAGGAGAGGAAAGTGTGGAAAATAATAAGGCTTGAGCTCAATCATAACCATGAACTTAGTCCCAATACAGAAAAGAAGTTTCTTCGCTCACATAAGAACATGACAGAAGAGGAGAAAAAGATGATAAAGACTTTGAAAGAGTGCAACATACCAATAAGGAATATGATTGCAATATTGTCTTTTCTCCGTGGAGGCTTGCACAATGTCAAATATTTTGAACACATGTGGAAAACTAGAGAACAATTTGTGCCTGTATATTTCAAGACTGACTTCTGCCCCTTCATTCAAAGCACAGCATTAAGTGAGGGCACAAATGCAAGGTTTAAAAGAAGTGTAGGACCAAAGCATAGTGTGATGAGCTTCATGAATGAGTATGAAAGCATAAATGACACTATATTCAGCACTGAGTACAGCAAAGATCATGAATCAAGAACTAAAAGACCAGATATACTATGGTGTAGAAACTACATTGAAGAACAAGCATTGCAATTGTACAACTTGAGCATATTTGAGAAATTCCAAGAAGAACTAATAGAATCTACAAGGATGGAAATGAATACTATAAAAAAAGGAAAGATATATGAGGTGTTCATAGCTCTGAATCAAACAAAGAAAGAGTGGAGACCAAGGAAATATGTTGTCATTACTGACTTACCACAAGAAAACTACAGTTGCATATGTGGGAAGTTCTCCAAAGATGGTATCCTCTGCTGCCATATCCTGAAAGTTATGTTGGCACTAGAAATTAAAAAGATTCCTGAGAAGTATATCATAGAAAGATGGAGGAAGAAAGAAAGGAAATATACAAGCACTTCTGACAGACCAATATACAATGGAAATAGCTCAATGTTGAGGTTCAATGTGCTGTCAAGAAAGTCAGTCAACATAGCATCAAAGGCATCAAAGAGGAAAGAAACATATGAGTGCATGTTAAATGAGATTGAGAACTTGGACAGAAAGATAAATGCTATGCTTGAAGATGTACCTGAAAGCTCGTCGCATCATCAAAGTAACACAGTGAACAATGTTCCTGCAGATGAAACAGAAGAAAAAATAACAGTGGAACAAGAAGAAATAGCAGATCCTGATATAGCTAACACAAAGGGCAGAAAATCAGTAAGACAGAGGAGAATAGTGGAGAAGATTATAGAGAAGACCAAAAACCACTGCAGTCGGTGTGGCAAAACAAATCACACAATAGAAAACTGCCCACTAATGCAAAGCAAAAGCAGAAAACTACTCCAACAGAAAACAGCAGGAGCCACTGGTCAAAATCAAGCAAAGCAACAAGAAAAGAAGAAAGCTGACATCAACAAAGAGCCTGAATCAACTAAAAGAATAATACAAGCTTCCCAAGATCCAAGGAAGAGGCAGAAGACATACCAAAGTAAAATCTGA
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Protein seq | MESTESTRKKRDKMKQIDQTQGDEQLVNQNQQISNTTTGAKIYRKLLQTPLGFEVSTTESYYKEFDEIYNNTFVEPLTEVNPRYTAGDNLGESSIDEQQQWLNLYGKNSDGKKKKKSNTKQRRKTKVIIKTDCKCVMVVREERKVWKIIRLELNHNHELSPNTEKKFLRSHKNMTEEEKKMIKTLKECNIPIRNMIAILSFLRGGLHNVKYFEHMWKTREQFVPVYFKTDFCPFIQSTALSEGTNARFKRSVGPKHSVMSFMNEYESINDTIFSTEYSKDHESRTKRPDILWCRNYIEEQALQLYNLSIFEKFQEELIESTRMEMNTIKKGKIYEVFIALNQTKKEWRPRKYVVITDLPQENYSCICGKFSKDGILCCHILKVMLALEIKKIPEKYIIERWRKKERKYTSTSDRPIYNGNSSMLRFNVLSRKSVNIASKASKRKETYECMLNEIENLDRKINAMLEDVPESSSHHQSNTVNNVPADETEEKITVEQEEIADPDIANTKGRKSVRQRRIVEKIIEKTKNHCSRCGKTNHTIENCPLMQSKSRKLLQQKTAGATGQNQAKQQEKKKADINKEPESTKRIIQASQDPRKRQKTYQSKI |
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Function | Protein FAR1-RELATED SEQUENCE 3 [UniProtKB/Swiss-Prot:Q9ZVC9] |
Transcripts
Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
OsIR64_05g0002800 | OsIR64_05g0002800.01 | Chr05 | 2466463 | 2471574 | - | NAM | ||
CDS seq | ATGGAGAGCACCGAGAGCACCAGGAAAAAGAGAGACAAAATGAAACAAATCGATCAAACTCAAGGTGATGAGCAGCTGGTGAATCAAAACCAGCAAATCAGCAACACAACAACAGGGGCTAAGATATACAGGAAACTACTTCAAACACCGCTAGGATTTGAGGTATCAACAACAGAGAGTTACTACAAAGAATTTGATGAAATATACAACAACACATTTGTAGAGCCATTGACGGAGGTAAATCCAAGATATACTGCTGGCGACAATCTTGGAGAATCTTCTATTGATGAACAACAACAGTGGCTGAACTTGTATGGCAAAAATTCAGATGGCAAAAAGAAGAAAAAGAGCAACACAAAACAGCGAAGGAAGACAAAAGTGATTATCAAGACTGACTGCAAGTGTGTGATGGTGGTTCGAGAGGAGAGGAAAGTGTGGAAAATAATAAGGCTTGAGCTCAATCATAACCATGAACTTAGTCCCAATACAGAAAAGAAGTTTCTTCGCTCACATAAGAACATGACAGAAGAGGAGAAAAAGATGATAAAGACTTTGAAAGAGTGCAACATACCAATAAGGAATATGATTGCAATATTGTCTTTTCTCCGTGGAGGCTTGCACAATGTCAAATATTTTGAACACATGTGGAAAACTAGAGAACAATTTGTGCCTGTATATTTCAAGACTGACTTCTGCCCCTTCATTCAAAGCACAGCATTAAGTGAGGGCACAAATGCAAGGTTTAAAAGAAGTGTAGGACCAAAGCATAGTGTGATGAGCTTCATGAATGAGTATGAAAGCATAAATGACACTATATTCAGCACTGAGTACAGCAAAGATCATGAATCAAGAACTAAAAGACCAGATATACTATGGTGTAGAAACTACATTGAAGAACAAGCATTGCAATTGTACAACTTGAGCATATTTGAGAAATTCCAAGAAGAACTAATAGAATCTACAAGGATGGAAATGAATACTATAAAAAAAGGAAAGATATATGAGGTGTTCATAGCTCTGAATCAAACAAAGAAAGAGTGGAGACCAAGGAAATATGTTGTCATTACTGACTTACCACAAGAAAACTACAGTTGCATATGTGGGAAGTTCTCCAAAGATGGTATCCTCTGCTGCCATATCCTGAAAGTTATGTTGGCACTAGAAATTAAAAAGATTCCTGAGAAGTATATCATAGAAAGATGGAGGAAGAAAGAAAGGAAATATACAAGCACTTCTGACAGACCAATATACAATGGAAATAGCTCAATGTTGAGGTTCAATGTGCTGTCAAGAAAGTCAGTCAACATAGCATCAAAGGCATCAAAGAGGAAAGAAACATATGAGTGCATGTTAAATGAGATTGAGAACTTGGACAGAAAGATAAATGCTATGCTTGAAGATGTACCTGAAAGCTCGTCGCATCATCAAAGTAACACAGTGAACAATGTTCCTGCAGATGAAACAGAAGAAAAAATAACAGTGGAACAAGAAGAAATAGCAGATCCTGATATAGCTAACACAAAGGGCAGAAAATCAGTAAGACAGAGGAGAATAGTGGAGAAGATTATAGAGAAGACCAAAAACCACTGCAGTCGGTGTGGCAAAACAAATCACACAATAGAAAACTGCCCACTAATGCAAAGCAAAAGCAGAAAACTACTCCAACAGAAAACAGCAGGAGCCACTGGTCAAAATCAAGCAAAGCAACAAGAAAAGAAGAAAGCTGACATCAACAAAGAGCCTGAATCAACTAAAAGAATAATACAAGCTTCCCAAGATCCAAGGAAGAGGCAGAAGACATACCAAAGTAAAATCTGA
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Protein seq | MESTESTRKKRDKMKQIDQTQGDEQLVNQNQQISNTTTGAKIYRKLLQTPLGFEVSTTESYYKEFDEIYNNTFVEPLTEVNPRYTAGDNLGESSIDEQQQWLNLYGKNSDGKKKKKSNTKQRRKTKVIIKTDCKCVMVVREERKVWKIIRLELNHNHELSPNTEKKFLRSHKNMTEEEKKMIKTLKECNIPIRNMIAILSFLRGGLHNVKYFEHMWKTREQFVPVYFKTDFCPFIQSTALSEGTNARFKRSVGPKHSVMSFMNEYESINDTIFSTEYSKDHESRTKRPDILWCRNYIEEQALQLYNLSIFEKFQEELIESTRMEMNTIKKGKIYEVFIALNQTKKEWRPRKYVVITDLPQENYSCICGKFSKDGILCCHILKVMLALEIKKIPEKYIIERWRKKERKYTSTSDRPIYNGNSSMLRFNVLSRKSVNIASKASKRKETYECMLNEIENLDRKINAMLEDVPESSSHHQSNTVNNVPADETEEKITVEQEEIADPDIANTKGRKSVRQRRIVEKIIEKTKNHCSRCGKTNHTIENCPLMQSKSRKLLQQKTAGATGQNQAKQQEKKKADINKEPESTKRIIQASQDPRKRQKTYQSKI
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Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
Leaf | Root | Panicle | |
FPKM | 0.000000 | 0.0 | 0.000000 |
Homologues
Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
---|---|---|---|---|---|
Leaf | Root | Panicle | |||
Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
Nipponbare | IRGSP 1.0 | MSU | LOC_Os05g03090 | SBH | 0.0 | 0.0 | 0.0 |
Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_05g0001660 | SBH | 0.0 | 0.0 | 0.0 |
KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_05g0001660 | SBH | 0.0 | 0.0 | 0.0 |
CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_05g0001730 | SBH | 0.0 | 0.0 | 0.0 |
ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_05g0001580 | SBH | 0.0 | 0.0 | None |
PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_05g0003030 | RBH | 0.000000 | 0.000000 | 0.000000 |
Minghui 63 | MH63RS3 | HZAU | NA | NA | NA | NA | NA |
IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_04g0010870 | RBH | 0.0 | 0.0 | 0.0 |
Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_05G0036400 | RBH | 0.32645 | 0.660551 | 0.005272 |
LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_05g0002930 | RBH | 0.0 | 0.0 | None |
KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_05g0002840 | RBH | 0.0 | 0.0 | None |
GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_05g0002950 | RBH | 0.0 | 0.0 | None |
LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_05g0002980 | RBH | 0.0 | 0.0 | 0.0 |
LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_05g0003020 | RBH | 0.000000 | 0.0 | None |
N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_05G008750 | SBH | 0.0 | 0.0 | 0.0 |
NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_05g0003030 | RBH | 0.0 | 0.0 | 0.0 |