Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsIR64_03g0033030 | OGI:03083680 | 15/16 | IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | Chr03:32325343-32329522 | ||||||||
| Gene Symbol | HDR2, OsHDR2 | ||||||||||
| DNA seq | ATGCACAAATAGTTCATGCTATGAACTCAAGTCTCAAATTCTCAATCAGCCGATCTTATTTCTTCTGTATCTTTATCTGACCATACTAGCATCTCATGTCTCCTTGTGCTTGCTCATCTCTGTGCGCCAGCAACAGTGTCTCATGATCTCATCTATTGCTCTGTCGCTTCACCAAGCTCCTGACGCTTTATCTCAAACACCTTCTGCAGCACATCCTCAACGACCTGGCATATTATTTAGTGCAGATATTTAGTCCCATGGTTATACTAGCACTGGAGCACTTATGGGCAAAACATTTGTAGTACTTGATAGGATATTTATTAATTCAGCGTGTAAATCGGATTAGATGCATAGATATACCTTGTCTGGAGTAGAGGCTCCAGAGGTGACTCCAATTGTGATTGCTCCATGGGGTAACCATTTGTCTTTCTCAACAAGTTCACCATTCTGCCATGCAATTGCACACATTCAGTAAATAACATAAACACATCCATTGTCATCTTTAATAGACTCACAGTATAGTTATCTTCCATTTTACAGAAGAAGTATATCATGAATTACTTTTTTGAAACAAAGGCAAAAGTTCTGCCTCGTTTCATTGATCAAGAAGAGATACACATCAACCATGAAAGAGTTACACACTGAAAACACCATTCTACAGGCACCTCAATATCATTCCCCATAGCTACATTGAACACTTGAAAACACCAAAGCAATCAAAACACCTATATACAACACCCAAGACCTAAGTACATCATGAATTATAAGCATGAGAATAAATGTATCAGATGTGTTAAGGAAGCAAACCTTTTGTTTGTAGCTGATCTTGTTCCCTGGCCCAATCCTCTGCTCACCATCGACCCAGTAGGAAGGAATGCCACTGAGTTCTCCAATTTCTTGCAAATGGGAGGTGTTACTGGAGTTCCATCCTCCGACGACAAGTATGAGGTCAACTTCCTTCTCTACCAATTTGTACATCGCATCCTGCCTTTCCTGATTCTCCGAGGCAAAATGTGTGATCAATATTGTCGAGTTATATTATAGATGTGGAATAGAGATTACCGAGGAAAATCTTTTCTAGAGTCAAAAATCAAATAGGAAAAAAAGATCACCTGAGTAGCATTGCAAATGGTGCCGACTCTGACGAAATGTTCTTGCTTCTTGTTCTGATCAAGACCATACTTACTCATCATTGTCTGCTCAATGAGTATTCCTAAAAAGACATAGTTTGATTGTAAATTTGCAAAGAGCTAACAAATCCCTTTTAAGTATAATTGATCGGATGACTACGACTATATATAAGACTGAAAATATTGGTTGTTTACATTTGCTTTGGATGAAAAGGCCTGTTTAATCCATTTTCTAAAAAATAAGACCGAAAAATCGAAGTCAAATTAACCCACCAATTTCTTTAGTTTCTCCTTTAAGCATTGTTGTTTGATTCACAACGCCTACTCTCTCCAAGTCAATATCAGGGTCAAATCCTGGAGAGATAGCATCTCTGAATTTCTGTAATCGCAAGCGTCTCCAATATTACAATCAGGTGATTCTAACATGTCGGTAAAGCATGATTCTTCTAAGCCCTTACCTTAAGGAACTTCTCTTTTGTTGAGCTGGACCCATCAAGTTGGCCTTCAAGAATGTAATCACACACATACTTTGCCTATTTATAACAATGATCACAATATAATCATAGAGATACAATACCTATATTTAGCAACTGAAAACAGTTCCTGTTTCACAAAAATCATTATTTTGAACTTCATAAAAATGAATTGCAATTTAAAAAAATGTACCTCAGTTATGTCCTTCACAATGATGTACTTGCCTGCAAAAGAGGCGGTTGCAACAGTCTCTTCGTGGGCATATTTTCCATGGATAATCGTAGTGTAGTTACCCTTTATATGCCTTTCTGTCATGTGCACAACCTAAGATTTCAATATTTACATGGTTTGTCAGCCCAAAGAGGAGACTGATAATAGTGGCATGGTGCAAACTTAATACTCCATCCGTTTCAAATTACTTGCCGTTCAAGATTTATACTAAGTCAAACATGTCTGTCTTTGACAATTATTATGAAAGTATTTCTCAAGGTGAATCTAAAAATATAAATTTTGTGATGCTAAACCATATGATTTTATAAAAAATAATAGTCAGAATAAAATGTTTGACTTAGGACAAGCCTTGAAATGGAGGGAACACTAGTAAACAAAGACAACATGATCAATAACTAAATATGTACTCCCTCCGGGTTGATAATATTTGTCGTTTTGGATAAGGGCACGGTCTCAAAAAAACAACTTTGACCATTATTTTTCATTATAATATGTATAAAAGTGTTAACAAATATATGATCTTATTAAATTACTTTTTAAGACTAATCTATACATGTAGTCACCATATTTGAAAGACAAATATTTTTAAAATGATTTATAACCAAGTATTTTAAAGTTTGGCCTCACCCTTGTCTAAAACGACAAGTATTATCAGCTCGGAGGGAGTATAAAGCCAAATAGAGACCAATTTTTTATATTTGTTGAACATTTTTAATTTTTAAATAAACCATTCCAAAACTTATTTTTAAAATCTAAACTTTTTGGCTACCCGCCATCCCGTCTGGTGTGGCAAAACAATATTGACATGCCACACATAGTGGGTGTAGCTGTTTTATCCTGCCACCCCAGCCAAGGTAGCGTGGCCAAACAATGTTGTCACGTCAGGTAGACCGGTATGACAATGCTGTTTTATCACGTCAATCTGGCTAGCGTGGTCAAAAGTTTTAGATCTTAGAAACAAATTTCCAATTGGTTTATTTTTAAAATTTAAAAATAAAAGGGCTCAAAATATATATATAAAAAATCATAGAGACCCCCCACACAAAAAAAGAAAGGAAAGAAAAGAAAAACAAGCCAATGAAATGAAAATAGTTACCTTTAGGACCAAAGGGCAGGTTGTGTCAACTATGTGCACGTTCTTCCTGTTTAGCGTGACCATCTCATCCACTGTAAATCCAAACGCTGGAAAAATGACCACATCGCCATCTTCAACAACACTCAAATCTTTTACACCGGAAACAACCGGGATGATTTTGACTCCCATCTCATCCAATCTCTGCAAATCCAAACTAACGAGGTAGTAATTGTACATCTCTTGTTAATCACCTTACACACACATAAGATCGAATGAAGCAAAGAGGGACCGGGCAAAGTCTAAAGAAGGACTTCATGAGAAAAAGCACAAGCACTCGTCAAAGAAAAATTTATCTTCGTACACTAATTCTAAACCAAGTGGTAAAGACAACTTGCACCTAGATCTCAACATCTATCCAAAAACCACAATCAATCAATCTAAGCATGAATTAACTTGTTCGTTAGCTAGATGAATCGACTGCATGCAGCTAGTAAATCCAACATATACAAAATTAATTGTATCCTGCTCAAGTTTGATCAATTAATCAAGCTGAAATTCTGTAGCTAGGTTGTTGTACCTCGCTGACGGTTGGGTTGTGGATGATCTGGTTAGTGAGCCACAGCCGCCGGTCGGGAAACTTGACGCGCGCGTCGTACGCGAGGCGCACGGCGTTGTCGACGCCGAGGCAGAAGCCGTGCGCCTCGGCCAGGATCAGCCTCACCAACCCGTCCATGGTCACGTACTCTCCCCCGTTCCTCTCCATCTCGCTGATCAGCTCGCCTTCACGCAATATGCATCGATAGCATCAAACGCCAATTGATCGATGACGAACTCGATTGTTTTGTTTGTTTGATCTACAAATTGATCAGTTTAATTTGTGAGGCAGTATGGGTATAATAGCTTACTGGTGTACTCGAGGTTTATGGCGCCGAGGATCTCGTGGCCGAAGCTCTTGCGGTTGTAGTTGCCTTGGCGGATCATTTTGCGGCGGTACTCGTGCTTGTCGAAGTTGCCGGGGTCATCGTCGGGCGCCGGCGGTGAGCTGCTCCCGCCTCCCCCGGCGCTGGAGACGACGACGACGTGGCGGCGAGGAGTACCGCGGCGGCGTTGCGCTAGGTGGTTCAACGACAACGAGGTGGTGGTCGCCGGCGGCTGCGGGAGAGGAGGCAAAACGAGGGGGAGGTGGTGGCCGGGGCGCGCGAAGGCCGCCATCGATCTGCCGCTTCGCCGACGAGCTGATGCCTAGTGGAAATGGACGCGCTGAGTGGGG
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| CDS seq | ATGGCGGCCTTCGCGCGCCCCGGCCACCACCTCCCCCTCGTTTTGCCTCCTCTCCCGCAGCCGCCGGCGACCACCACCTCGTTGTCGTTGAACCACCTAGCGCAACGCCGCCGCGGTACTCCTCGCCGCCACGTCGTCGTCGTCTCCAGCGCCGGGGGAGGCGGGAGCAGCTCACCGCCGGCGCCCGACGATGACCCCGGCAACTTCGACAAGCACGAGTACCGCCGCAAAATGATCCGCCAAGGCAACTACAACCGCAAGAGCTTCGGCCACGAGATCCTCGGCGCCATAAACCTCGAGTACACCAGCGAGCTGATCAGCGAGATGGAGAGGAACGGGGGAGAGTACGTGACCATGGACGGGTTGGTGAGGCTGATCCTGGCCGAGGCGCACGGCTTCTGCCTCGGCGTCGACAACGCCGTGCGCCTCGCGTACGACGCGCGCGTCAAGTTTCCCGACCGGCGGCTGTGGCTCACTAACCAGATCATCCACAACCCAACCGTCAGCGAGAGATTGGATGAGATGGGAGTCAAAATCATCCCGGTTGTTTCCGGTGTAAAAGATTTGAGTGTTGTTGAAGATGGCGATGTGGTCATTTTTCCAGCGTTTGGATTTACAGTGGATGAGATGGTCACGCTAAACAGGAAGAACGTGCACATAGTTGACACAACCTGCCCTTTGGTCCTAAAGGTTGTGCACATGACAGAAAGGCATATAAAGGGTAACTACACTACGATTATCCATGGAAAATATGCCCACGAAGAGACTGTTGCAACCGCCTCTTTTGCAGGCAAGTACATCATTGTGAAGGACATAACTGAGGCAAAGTATGTGTGTGATTACATTCTTGAAGGCCAACTTGATGGGTCCAGCTCAACAAAAGAGAAGTTCCTTAAGAAATTCAGAGATGCTATCTCTCCAGGATTTGACCCTGATATTGACTTGGAGAGAGTAGGCGTTGTGAATCAAACAACAATGCTTAAAGGAGAAACTAAAGAAATTGGAATACTCATTGAGCAGACAATGATGAGTAAGTATGGTCTTGATCAGAACAAGAAGCAAGAACATTTCGTCAGAGTCGGCACCATTTGCAATGCTACTCAGGAAAGGCAGGATGCGATGTACAAATTGGTAGAGAAGGAAGTTGACCTCATACTTGTCGTCGGAGGATGGAACTCCAGTAACACCTCCCATTTGCAAGAAATTGGAGAACTCAGTGGCATTCCTTCCTACTGGGTCGATGGTGAGCAGAGGATTGGGCCAGGGAACAAGATCAGCTACAAACAAAAGAATGGTGAACTTGTTGAGAAAGACAAATGGTTACCCCATGGAGCAATCACAATTGGAGTCACCTCTGGAGCCTCTACTCCAGACAAGGTCGTTGAGGATGTGCTGCAGAAGGTGTTTGAGATAAAGCGTCAGGAGCTTGGTGAAGCGACAGAGCAATAG
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| Protein seq | MAAFARPGHHLPLVLPPLPQPPATTTSLSLNHLAQRRRGTPRRHVVVVSSAGGGGSSSPPAPDDDPGNFDKHEYRRKMIRQGNYNRKSFGHEILGAINLEYTSELISEMERNGGEYVTMDGLVRLILAEAHGFCLGVDNAVRLAYDARVKFPDRRLWLTNQIIHNPTVSERLDEMGVKIIPVVSGVKDLSVVEDGDVVIFPAFGFTVDEMVTLNRKNVHIVDTTCPLVLKVVHMTERHIKGNYTTIIHGKYAHEETVATASFAGKYIIVKDITEAKYVCDYILEGQLDGSSSTKEKFLKKFRDAISPGFDPDIDLERVGVVNQTTMLKGETKEIGILIEQTMMSKYGLDQNKKQEHFVRVGTICNATQERQDAMYKLVEKEVDLILVVGGWNSSNTSHLQEIGELSGIPSYWVDGEQRIGPGNKISYKQKNGELVEKDKWLPHGAITIGVTSGASTPDKVVEDVLQKVFEIKRQELGEATEQ |
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| Function | 4-hydroxy-3-methylbut-2-enyl diphosphate reductase, chloroplastic [UniProtKB/Swiss-Prot:Q6AVG6] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsIR64_03g0033030 | OsIR64_03g0033030.01 | Chr03 | 32325343 | 32329522 | - | NAM | ||
| CDS seq | ATGGCGGCCTTCGCGCGCCCCGGCCACCACCTCCCCCTCGTTTTGCCTCCTCTCCCGCAGCCGCCGGCGACCACCACCTCGTTGTCGTTGAACCACCTAGCGCAACGCCGCCGCGGTACTCCTCGCCGCCACGTCGTCGTCGTCTCCAGCGCCGGGGGAGGCGGGAGCAGCTCACCGCCGGCGCCCGACGATGACCCCGGCAACTTCGACAAGCACGAGTACCGCCGCAAAATGATCCGCCAAGGCAACTACAACCGCAAGAGCTTCGGCCACGAGATCCTCGGCGCCATAAACCTCGAGTACACCAGCGAGCTGATCAGCGAGATGGAGAGGAACGGGGGAGAGTACGTGACCATGGACGGGTTGGTGAGGCTGATCCTGGCCGAGGCGCACGGCTTCTGCCTCGGCGTCGACAACGCCGTGCGCCTCGCGTACGACGCGCGCGTCAAGTTTCCCGACCGGCGGCTGTGGCTCACTAACCAGATCATCCACAACCCAACCGTCAGCGAGAGATTGGATGAGATGGGAGTCAAAATCATCCCGGTTGTTTCCGGTGTAAAAGATTTGAGTGTTGTTGAAGATGGCGATGTGGTCATTTTTCCAGCGTTTGGATTTACAGTGGATGAGATGGTCACGCTAAACAGGAAGAACGTGCACATAGTTGACACAACCTGCCCTTTGGTCCTAAAGGTTGTGCACATGACAGAAAGGCATATAAAGGGTAACTACACTACGATTATCCATGGAAAATATGCCCACGAAGAGACTGTTGCAACCGCCTCTTTTGCAGGCAAGTACATCATTGTGAAGGACATAACTGAGGCAAAGTATGTGTGTGATTACATTCTTGAAGGCCAACTTGATGGGTCCAGCTCAACAAAAGAGAAGTTCCTTAAGAAATTCAGAGATGCTATCTCTCCAGGATTTGACCCTGATATTGACTTGGAGAGAGTAGGCGTTGTGAATCAAACAACAATGCTTAAAGGAGAAACTAAAGAAATTGGAATACTCATTGAGCAGACAATGATGAGTAAGTATGGTCTTGATCAGAACAAGAAGCAAGAACATTTCGTCAGAGTCGGCACCATTTGCAATGCTACTCAGGAAAGGCAGGATGCGATGTACAAATTGGTAGAGAAGGAAGTTGACCTCATACTTGTCGTCGGAGGATGGAACTCCAGTAACACCTCCCATTTGCAAGAAATTGGAGAACTCAGTGGCATTCCTTCCTACTGGGTCGATGGTGAGCAGAGGATTGGGCCAGGGAACAAGATCAGCTACAAACAAAAGAATGGTGAACTTGTTGAGAAAGACAAATGGTTACCCCATGGAGCAATCACAATTGGAGTCACCTCTGGAGCCTCTACTCCAGACAAGGTCGTTGAGGATGTGCTGCAGAAGGTGTTTGAGATAAAGCGTCAGGAGCTTGGTGAAGCGACAGAGCAATAG
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| Protein seq | MAAFARPGHHLPLVLPPLPQPPATTTSLSLNHLAQRRRGTPRRHVVVVSSAGGGGSSSPPAPDDDPGNFDKHEYRRKMIRQGNYNRKSFGHEILGAINLEYTSELISEMERNGGEYVTMDGLVRLILAEAHGFCLGVDNAVRLAYDARVKFPDRRLWLTNQIIHNPTVSERLDEMGVKIIPVVSGVKDLSVVEDGDVVIFPAFGFTVDEMVTLNRKNVHIVDTTCPLVLKVVHMTERHIKGNYTTIIHGKYAHEETVATASFAGKYIIVKDITEAKYVCDYILEGQLDGSSSTKEKFLKKFRDAISPGFDPDIDLERVGVVNQTTMLKGETKEIGILIEQTMMSKYGLDQNKKQEHFVRVGTICNATQERQDAMYKLVEKEVDLILVVGGWNSSNTSHLQEIGELSGIPSYWVDGEQRIGPGNKISYKQKNGELVEKDKWLPHGAITIGVTSGASTPDKVVEDVLQKVFEIKRQELGEATEQ
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.000000 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_03g0732000 | RBH | 0.000000 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os03g52180 | RBH | 0.000000 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os03g0732000 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_03g0033560 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_03g0033260 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_03g0033330 | RBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_03g0033650 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_03g0033260 | RBH | 0.000000 | 10.046658 | 0.000000 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_03G0511000 | RBH | 0.0246055 | 10.6825195 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_03g0033020 | RBH | 3.946154 | 0.547758 | 5.351815 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_03G0511900 | RBH | 0 | 11.209634 | 0.022297 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_03g0033500 | RBH | 0.0 | 0.000000 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_03g0033490 | RBH | 0.0 | 24.062210 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_03g0033240 | SBH | 120.533211 | 15.371177 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_03g0033220 | RBH | 0.0 | 0.000000 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_03g0033230 | RBH | 0.000000 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_03G032990 | RBH | 0.0 | 0.530700 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_03g0032830 | RBH | 0.0 | 0.000000 | 0.0 |
