Basic Info

Gene ID OGI # | Score   Accession | Assembly | Annotation Location Links
OsIR64_03g0026840 OGI:03070080 | 16/16 IR 64 | OsIR64RS1 | Gramene(+IsoSeq) Chr03:26551042-26556231
Gene Symbol -
DNA seq

TTACTGGAGCTCACTGTTAGCATCACCAGTGAGAGAAGGAAAGGGGGGGATGATGCTCTTCAGACCCAATTCCTTCCTACACGTTGGAGACAAGGTGTTTCCGGTGCGTAGGGGAGACACCCTCTTCTTGTTAGGTGACGCAATCCTCAAGCTGGCGGTGCAAGAGGAATCCCCTTGCTGCAGCAGCATATCTGATGCTTCATTCCCAAGAAGCATTTGTGTGTAGCTCCCAAAAGGAGATAGCAAAACATCTGTTCTCGTGGGAGAATGTAGGTGGGAAGAAGTTCTTGTTGATGATGTAAGTGAGCTCTTGGGGCATTCAGATGGGAATAGGGCAAAAGCTCTGGAAAGAACACAGCAACAAAATATGTATGTTATGGTATTTTGGAAGGGAGTCAGTGAGAATCATGATAAAATGTCTACAATTTGTACACAAACCTGCGAGAATCCATTGAAGGTGTTGTGAATAGGTTCTCCGTGGATCGAACACCCCAGATTTCACATAATGCATGATATTTGTCCATCTCAGACTGTTCTTCCTTGGGATGATCCTTCATTTTTCGGTCTGCTCGCTCAATTTCCTTGGTTTCAAACCGTTCAATTCCTTCAAAGGCATTAAGGCATTAAAATTGGTAAAAACGGACAACTAAAAAGGCAATAAAGGCAGAGCAAAATGTAGCATATTTTCACATAAAACATGGTTACAGCAGCAAAATAATTGACGATCCATTTTAAAATTTACGTCTAGGATAAAATTTTACTTTGATTTACTTTATTTGAAACTGATATTTATCATAATTCAATCAATGTGAGATGCTGCAACTATGAAAAATACTCTAGCAACCTAATATTATGATTGATCTGGAAATTCAGGGGCGTAAGACCTCAGGCATGCCTTAGTAGAGAATGAGGATAAGACAATGCCACCTGCCAAGTTATGGCAATCTCAATGTTCCACGGTTTTTGGGTGAAGAACTTCCCAACAGAAAGTTAACCATACGGCCCATGATATTGCTCATTTTGATCATAGTACTTTAATCTAGTTGGATGGGGATTTCACATGAACAGACATTCTTGAGATGGTATAACCTTTTGCAATTTGACCATACAAAGATCCTAAGAAAGCGATGTCATTTTTACAGTATGGAACTAGCAGCTAATAAATTTACTCCTTTTGACCTAAACCCATGCGGTGGAATAAAACATTGCAAGCAAAGAGCTTATAGAAAAATGCAGTGTACATTAAATTGAGTGGCTTATGAATTGCTCAATTGCACCTTCCTAAGAAAATTATCAAGGAAAAGTCAAACTCACCTTTTCTTACTCCAAAAGAATTCTTACAATTCTCACATCGGCAACTCATGGAGCACCCCACACCACTCTAGATATAAAATATGTATCAGATGATAGTCAGTATGTTAAACCGATGAAAGGCAATAAAGTTATCAATGGCCCTGTTTGGGGGAGCTTAAAATTCTGAGAAGCAGCTGGTAAGAATCTGAAGAAGCTAGGAAATCCAGTTTCTAGCTTCTAGTTCATTTTATGGTTTCTACAACTATGGGTTCTTAGGATATGAGTGAAAATCTAGACTATTTGGAGGAGCTTATGGCAGCTGTTACTTCTAGAAGAATCTCCCGCTACAAGAAGCTCTCCCAAACAGGTCCAATATAAGACCGGTACAAGGATTGGAACCTGAAAGCATTCACAGTATTTCTTCACACAATATGATCTCTTGCAATTGCAACCTCTTTTATGACGAGATGAAGCAGGAGTTGCATTAGAGTCTTCCTATGCCATGAAAAAGAACGTTATGAGCAATAATGACAGAAAAGAAAAGCAAAAGGAATGTGCTCTTACCCCAAACTCCAGACCAGGCCCACAAGTGCGAATTACTTTTGGAGCAAAAGCTAGTGGATTACGAGATTCAATCCGATTGCGAGTAGATAAAACTGTTTCCTCATGACTATGATCATTAAAACACCCTCGGCAGGAGCAAGATTCTGAACAGTACACTTTGGAAGCAAAACATTCGCAATAACTGCAAAGGTATTAGCAAGTATGCAAGGTTATTACTTTAAATATAACCATCTAGCAACCATTACTTGCAAACATCCAGAATTAGGTACTGTAAATGATAATATTCAAAACCAAGTCAATGTTATAACGGCTTTAATAATTAAGTTAGAAGCTACATACAATTCAAGCATAATATGCATGTATTTTGGTCCTAAAACCAGACTTCAGCTGGGATCATCATTTGTGGTTAAACATACCTTGGAATAACCCAAGAATTACAGTATTGTAATTTGATACAGTTCCCTATGACCTTTCTATGGGGATATTATAAGAGAATGCACATAAAAAATAACAGTTAACTGCAAGGAACCTTACAGTTTCAAGCATTTTGACTTCTTACAGCTGCAACGTTTGCATGAGTCCACATTGCCATTTTGACATTTCTGCCTGCAAAATTCGACATGATTTTATGATTGGCAGAGTAATCATTTAATTAGACATATATACCTAGAATACCTTTTTCTCTTGGGATTTTCTTGACCAGAATTACCAGCACTCGTAGGCATCGTTGCCTGAGAAGAGTAGTCGCCTTGATTATGTGTGTTCATTTCACTGGTATTGGGAGCCAGCTGATTGACAGGAACAACAGTACTAATCTCAGTATTATGTTCAGATATTGAAAGAGTGGAATTAACAGTGCATGTCATGTTATATGGTACCATTTCTTCTGTCATTCGGACCAAATGCAAATCAACATTAGGTAGTGCACAGACAGGGGATCCCACAAGCTTCGAGTAGTTATCATCAGGTATACTTCTATGCCTAGTAGCACAGGTTGAAGCACCAAGATTTGAGGCACTCTGCACACCCATAGTAGGATCCCTTACCTTGTCATTGAAGAGACTGCGCCTATGCAAACCACGTAGATGCTGTGATACAGCCTGCCAGATCAAAACAAGTTGTATTTTAGTACTAAATAATACTTGATTTGGATTAATGCAAGATAAAATAATATGAGACAAGACTGGAAAATTTGTGATAAAAAATAAAATAGTTCTGACAATATTTCTTTTTTAAAAAAGTTGACTATAAAACATAGAAAGGGGCACCAGACAGGTCAAATTAAAATTTCCTTAATCACAAAAAAAAATTGTCTTGCTGATTCCATTGCATTACATAAGTAAACAATTAAAATTTTGATACCATAATTTCTAGCCAGTCAACAAGACAGTCAGACTGAAAATTAAATTTGATATTGACAAATACTATATCACATTGAGAAATGAAACAAACAAAGAATCATTTATTTCTATGAAGAAGTATACAACTATAATGCAATGGTAGGTAGCTCAGAAAAGTATATAGATGATATTAAGATGCCTACGCTGGGGTTCATTGCCATGTAATCGCTGGGCACTTCAAGTGAGTCAGAGAAGTGATGATCTGGAATCAATTGACTTTCTCTAGGGCAAGGTAGAATTCCAGAGACATGATTTGTTGCGACCTCTTTCCCTCGAGAGGTACAATAAGCATGAATGTTATCTACAGCACTCTGAGAATAACAGTCAGCTGATCCCTGAAACAGCTTTCTTCTTGAATTCTCCAAATTTGCTTCAACAATTGGCAAGAAAGATTTACCAGGCATGGCATCACCATTTTTTGGTGTCTCCAGTAATAGTTCTGCTGTCTCAAATCTCAGATCTGACTCTGGCACAACACTACTATCATATTGAGTACCCAAGTAATCCCAATCACATGCTGTTATTTCATCGTTATGTGTTTTAGCCAGATCTCTTTTCTGAACATTCATTCCAGAAGTCAATTGCTTCATTTTGTCTAGGCATCTTTGATCAAAGCATGATAGTTTTGCATGTTTCTGGGCTGTTTCATGATCTGTTTTGCCAGCGATGCCGTGTCTCTTGTCACTTCCCAAGGTATCACTACTAAGCTGGATGCGCTGAGCCAAATTAGTTGGCAAAATTGATGCATTATCAGGAGAATCATGATAAGCTTGGCTGAGGGAACGATCTATACTGCAATTTTTTGAAGCAATTGTCATGGGTCCAGACTGTTTTATACAACTTGATCTTCCTATTTGAGTCATGTGACAATAAGGAGACAAGCCGTCTTGACAAGGTTTTGCAGAAGTATTCCTAGTAAATATATAGTAAGCATACATTAAGCCAAAATGAGTAAACTTACAGAAAGTCATAAATCAGTTAATATAAGACTAAGGTTACCAAATTGAAGTCTTGGATCCCTTTTGTGAATTAACTTCTGGCGGGGTGAAGATTGAAGGAATATGAACCAAATCTGATGACTTGATCATCTGTAAATTTGGTACAGCATCTAGAGGTTGAGATGATGATATAGGGGAGAGAGATTTGACGAAATTAAGAAAAGGAGAGTCCTGCAGGTGTAAAATCTAATTAGAAACATATATAACTACCACATAACATGTAGTATCTTTTAATCAGAGTATGCAACAATTGTTTGCTCACTTAACAAATAAATTGCAAGAAGCATCACATTACAGATCAAATGTTAGAAAAATGATGTTGTCCTAACAGCAATAGATGTGAACACATTTCCAAGAGAAACCATTTATGCAATCTGAGGGGACATCAAACGGCTTTAAGCTTTTCCAATTTTAATTGTGAAGAATGAACAGCATAAAGGGGATAACATTTTGTGGGAAAGCAATGAAATTTGAAGATCAAGTGAATGCAATCCATTACTGATCGGCATCAAAACACAAATATTCCATTATGCTCCAGCGAGAGAATCTCCCACGAAAGTAGACAGAGGCAAGAGGATCCGTTAATCCTGAATTTCTGACAGAGGGAATGATTTTTAGATCAGTCGGTTATTACTAACCAAAAATGCCTCTCTTCAGACACCAACAATCATTAAAAGAGACACATTTTCCCAATCAATAAAAAAGTTGTGGCCAACAAAACACATAGAAGCGCACTTGGCATCCAGAAAAGAGATAGAGAAACGGAAATTCGATCCACAAATATCTGGCAGCACATCATCAATCTTGCATCTGAAAACATGCATAACTACATAAAAAATAACGAACAAAAGAATTCACAGAAATGAATGATCTATTCCAAAATTCCCAAAGGTGGTAAATTTGAGAACCTCTGCAAGCACCCAATCCACGTCCAT

More
CDS seq

ATGGACGTGGATTGGGTGCTTGCAGAGGACTCTCCTTTTCTTAATTTCGTCAAATCTCTCTCCCCTATATCATCATCTCAACCTCTAGATGCTGTACCAAATTTACAGATGATCAAGTCATCAGATTTGGTTCATATTCCTTCAATCTTCACCCCGCCAGAACGCATCCAGCTTAGTAGTGATACCTTGGGAAGTGACAAGAGACACGGCATCGCTGGCAAAACAGATCATGAAACAGCCCAGAAACATGCAAAACTATCATGCTTTGATCAAAGATGCCTAGACAAAATGAAGCAATTGACTTCTGGAATGAATGTTCAGAAAAGAGATCTGGCTAAAACACATAACGATGAAATAACAGCATGTGATTGGGATTACTTGGGTACTCAATATGATAGTAGTGTTGTGCCAGAGTCAGATCTGAGATTTGAGACAGCAGAACTATTACTGGAGACACCAAAAAATGGTGATGCCATGCCTGGTAAATCTTTCTTGCCAATTGTTGAAGCAAATTTGGAGAATTCAAGAAGAAAGCTGTTTCAGGGATCAGCTGACTGTTATTCTCAGAGTGCTGTAGATAACATTCATGCTTATTGTACCTCTCGAGGGAAAGAGGTCGCAACAAATCATGTCTCTGGAATTCTACCTTGCCCTAGAGAAAGTCAATTGATTCCAGATCATCACTTCTCTGACTCACTTGAAGTGCCCAGCGATTACATGGCAATGAACCCCAGCGCTGTATCACAGCATCTACGTGGTTTGCATAGGCGCAGTCTCTTCAATGACAAGGTAAGGGATCCTACTATGGGTGTGCAGAGTGCCTCAAATCTTGGTGCTTCAACCTGTGCTACTAGGCATAGAAGTATACCTGATGATAACTACTCGAAGCTTGTGGGATCCCCTGTCTGTGCACTACCTAATGTTGATTTGCATTTGGTCCGAATGACAGAAGAAATGCTGGCTCCCAATACCAGTGAAATGAACACACATAATCAAGGCGACTACTCTTCTCAGGCAACGATGCCTACGAGTGCTGGTAATTCTGGTCAAGAAAATCCCAAGAGAAAAAGTTATTGCGAATGTTTTGCTTCCAAAGTGTACTGTTCAGAATCTTGCTCCTGCCGAGGGTGTTTTAATGATCATAGTCATGAGGAAACAGTTTTATCTACTCGCAATCGGATTGAATCTCGTAATCCACTAGCTTTTGCTCCAAAAGTAATTCGCACTTGTGGGCCTGGTCTGGAGTTTGGGGAAGACTCTAATGCAACTCCTGCTTCATCTCGTCATAAAAGAGGAATTGAACGGTTTGAAACCAAGGAAATTGAGCGAGCAGACCGAAAAATGAAGGATCATCCCAAGGAAGAACAGTCTGAGATGGACAAATATCATGCATTATGTGAAATCTGGGGTGTTCGATCCACGGAGAACCTATTCACAACACCTTCAATGGATTCTCGCAGAGCTTTTGCCCTATTCCCATCTGAATGCCCCAAGAGCTCACTTACATCATCAACAAGAACTTCTTCCCACCTACATTCTCCCACGAGAACAGATGTTTTGCTATCTCCTTTTGGGAGCTACACACAAATGCTTCTTGGGAATGAAGCATCAGATATGCTGCTGCAGCAAGGGGATTCCTCTTGCACCGCCAGCTTGAGGATTGCGTCACCTAACAAGAAGAGGGTGTCTCCCCTACGCACCGGAAACACCTTGTCTCCAACGTGTAGGAAGGAATTGGGTCTGAAGAGCATCATCCCCCCCTTTCCTTCTCTCACTGGTGATGCTAACAGTGAGCTCCAGTAA

More
Protein seq

MDVDWVLAEDSPFLNFVKSLSPISSSQPLDAVPNLQMIKSSDLVHIPSIFTPPERIQLSSDTLGSDKRHGIAGKTDHETAQKHAKLSCFDQRCLDKMKQLTSGMNVQKRDLAKTHNDEITACDWDYLGTQYDSSVVPESDLRFETAELLLETPKNGDAMPGKSFLPIVEANLENSRRKLFQGSADCYSQSAVDNIHAYCTSRGKEVATNHVSGILPCPRESQLIPDHHFSDSLEVPSDYMAMNPSAVSQHLRGLHRRSLFNDKVRDPTMGVQSASNLGASTCATRHRSIPDDNYSKLVGSPVCALPNVDLHLVRMTEEMLAPNTSEMNTHNQGDYSSQATMPTSAGNSGQENPKRKSYCECFASKVYCSESCSCRGCFNDHSHEETVLSTRNRIESRNPLAFAPKVIRTCGPGLEFGEDSNATPASSRHKRGIERFETKEIERADRKMKDHPKEEQSEMDKYHALCEIWGVRSTENLFTTPSMDSRRAFALFPSECPKSSLTSSTRTSSHLHSPTRTDVLLSPFGSYTQMLLGNEASDMLLQQGDSSCTASLRIASPNKKRVSPLRTGNTLSPTCRKELGLKSIIPPFPSLTGDANSELQ

Function Protein tesmin/TSO1-like CXC 3 [UniProtKB/Swiss-Prot:Q8L548]

Transcripts

Gene Transcript Chromosome Start End Strand Source
OsIR64_03g0026840 OsIR64_03g0026840.01 Chr03 26551042 26556231 - NAM
CDS seq

ATGGACGTGGATTGGGTGCTTGCAGAGGACTCTCCTTTTCTTAATTTCGTCAAATCTCTCTCCCCTATATCATCATCTCAACCTCTAGATGCTGTACCAAATTTACAGATGATCAAGTCATCAGATTTGGTTCATATTCCTTCAATCTTCACCCCGCCAGAACGCATCCAGCTTAGTAGTGATACCTTGGGAAGTGACAAGAGACACGGCATCGCTGGCAAAACAGATCATGAAACAGCCCAGAAACATGCAAAACTATCATGCTTTGATCAAAGATGCCTAGACAAAATGAAGCAATTGACTTCTGGAATGAATGTTCAGAAAAGAGATCTGGCTAAAACACATAACGATGAAATAACAGCATGTGATTGGGATTACTTGGGTACTCAATATGATAGTAGTGTTGTGCCAGAGTCAGATCTGAGATTTGAGACAGCAGAACTATTACTGGAGACACCAAAAAATGGTGATGCCATGCCTGGTAAATCTTTCTTGCCAATTGTTGAAGCAAATTTGGAGAATTCAAGAAGAAAGCTGTTTCAGGGATCAGCTGACTGTTATTCTCAGAGTGCTGTAGATAACATTCATGCTTATTGTACCTCTCGAGGGAAAGAGGTCGCAACAAATCATGTCTCTGGAATTCTACCTTGCCCTAGAGAAAGTCAATTGATTCCAGATCATCACTTCTCTGACTCACTTGAAGTGCCCAGCGATTACATGGCAATGAACCCCAGCGCTGTATCACAGCATCTACGTGGTTTGCATAGGCGCAGTCTCTTCAATGACAAGGTAAGGGATCCTACTATGGGTGTGCAGAGTGCCTCAAATCTTGGTGCTTCAACCTGTGCTACTAGGCATAGAAGTATACCTGATGATAACTACTCGAAGCTTGTGGGATCCCCTGTCTGTGCACTACCTAATGTTGATTTGCATTTGGTCCGAATGACAGAAGAAATGCTGGCTCCCAATACCAGTGAAATGAACACACATAATCAAGGCGACTACTCTTCTCAGGCAACGATGCCTACGAGTGCTGGTAATTCTGGTCAAGAAAATCCCAAGAGAAAAAGTTATTGCGAATGTTTTGCTTCCAAAGTGTACTGTTCAGAATCTTGCTCCTGCCGAGGGTGTTTTAATGATCATAGTCATGAGGAAACAGTTTTATCTACTCGCAATCGGATTGAATCTCGTAATCCACTAGCTTTTGCTCCAAAAGTAATTCGCACTTGTGGGCCTGGTCTGGAGTTTGGGGAAGACTCTAATGCAACTCCTGCTTCATCTCGTCATAAAAGAGGAATTGAACGGTTTGAAACCAAGGAAATTGAGCGAGCAGACCGAAAAATGAAGGATCATCCCAAGGAAGAACAGTCTGAGATGGACAAATATCATGCATTATGTGAAATCTGGGGTGTTCGATCCACGGAGAACCTATTCACAACACCTTCAATGGATTCTCGCAGAGCTTTTGCCCTATTCCCATCTGAATGCCCCAAGAGCTCACTTACATCATCAACAAGAACTTCTTCCCACCTACATTCTCCCACGAGAACAGATGTTTTGCTATCTCCTTTTGGGAGCTACACACAAATGCTTCTTGGGAATGAAGCATCAGATATGCTGCTGCAGCAAGGGGATTCCTCTTGCACCGCCAGCTTGAGGATTGCGTCACCTAACAAGAAGAGGGTGTCTCCCCTACGCACCGGAAACACCTTGTCTCCAACGTGTAGGAAGGAATTGGGTCTGAAGAGCATCATCCCCCCCTTTCCTTCTCTCACTGGTGATGCTAACAGTGAGCTCCAGTAA

More
Protein seq

MDVDWVLAEDSPFLNFVKSLSPISSSQPLDAVPNLQMIKSSDLVHIPSIFTPPERIQLSSDTLGSDKRHGIAGKTDHETAQKHAKLSCFDQRCLDKMKQLTSGMNVQKRDLAKTHNDEITACDWDYLGTQYDSSVVPESDLRFETAELLLETPKNGDAMPGKSFLPIVEANLENSRRKLFQGSADCYSQSAVDNIHAYCTSRGKEVATNHVSGILPCPRESQLIPDHHFSDSLEVPSDYMAMNPSAVSQHLRGLHRRSLFNDKVRDPTMGVQSASNLGASTCATRHRSIPDDNYSKLVGSPVCALPNVDLHLVRMTEEMLAPNTSEMNTHNQGDYSSQATMPTSAGNSGQENPKRKSYCECFASKVYCSESCSCRGCFNDHSHEETVLSTRNRIESRNPLAFAPKVIRTCGPGLEFGEDSNATPASSRHKRGIERFETKEIERADRKMKDHPKEEQSEMDKYHALCEIWGVRSTENLFTTPSMDSRRAFALFPSECPKSSLTSSTRTSSHLHSPTRTDVLLSPFGSYTQMLLGNEASDMLLQQGDSSCTASLRIASPNKKRVSPLRTGNTLSPTCRKELGLKSIIPPFPSLTGDANSELQ

More
Event Type Chromosome Start End Strand Alternative mRNAs Total mRNAs Source

Expression

Leaf Root Panicle
FPKM 0.0 0.0 0.0

Homologues

Genome & Annotation Homologs Type Expression(FPKM)
Leaf Root Panicle
Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) OsNip_03g0638300 RBH 0.0 0.0 0.0
Nipponbare | IRGSP 1.0 | MSU LOC_Os03g43730 RBH 0.0 0.0 0.000000
Nipponbare | IRGSP 1.0 | RAP-db Os03g0638300 RBH None None None
Azucena | AzucenaRS1 | Gramene(+IsoSeq) OsAzu_03g0027460 RBH 0.0 0.179440 0.000000
KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) OsKeNa_03g0027200 RBH 0.0 0.0 0.0
CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) OsCMeo_03g0027260 RBH 0.0 0.0 0.000000
ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) OsARC_03g0027290 RBH 0.0 0.0 None
PR 106 | Os127742RS1 | Gramene(+IsoSeq) OsPr106_03g0027070 RBH 0.0 0.0 0.000000
Minghui 63 | MH63RS3 | HZAU OsMH63_03G0428300 RBH 0.217955 0.1864105 1.089525
IR 64 | OsIR64RS1 | Gramene(+IsoSeq) OsIR64_12g0019230 RBH 0.000000 1.235325 0.611812
Zhenshan 97 | ZS97RS3 | HZAU OsZS97_03G0431500 RBH 0.101156 0.089752 1.340289
LIMA | Os127564RS1 | Gramene(+IsoSeq) OsLima_03g0027100 RBH 0.0 0.0 None
KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) OsKYG_03g0027140 RBH 0.0 0.0 None
GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) OsGoSa_03g0027230 RBH 0.0 0.0 None
LIU XU | Os125827RS1 | Gramene(+IsoSeq) OsLiXu_03g0026950 RBH 0.0 0.118240 0.0
LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) OsLaMu_03g0026920 RBH 0.0 0.0 None
N22 | OsN22RS2 | Gramene(+IsoSeq) OsN22_03G026930 RBH 0.0 0.0 0.0
NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) OsNaBo_03g0026920 RBH 0.000000 0.0 0.0
Powered by

© 2021- Rice Gene Index @Zhang Lab. All Rights Reserved.

National Key Laboratory of Crop Genetic Improvement

Huazhong Agricultural University

Any comments and suggestions, please contact us.