Basic Info |
Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
OsIR64_03g0025740 | OGI:03066820 | 14/16 | IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | Chr03:25242886-25244342 | ||||||||
Gene Symbol | - | ||||||||||
DNA seq | CTATTGGCCGAGACCAATGAGGACACCGATGTCGTAAATTCAACACCATGGTCTCAGCCAAAGCGGTTTATTCGAAAGCCTCCAAGATTTTTGTCGCCGGTGGTTGTTGGCCCAAGTATCATGCCATCTGACGTGTCGCTGAGCGTTCAGCTCAGGGACTTCTTATTGACCAATGGTGGTCGTATGGACAGGTCGGTGTACATCACACTATTGATTATGTCCTTATGGTGCATCATGTTTTCATCCGTTCCCCCCTCCTTTTTTTGGCTTGCTTTCATTTTTACGGGTTTTCGTGTTATTTTTTCATGGTATGCTTGCAGCGTGAAATTGCTAGAGATTGACAGCTCCGTTGCGTATGGATACGATGTACTCAAATCATTCTCCAACGGGAATCTGACAGAGGGGCTATTCATAGACGCGTTCAGCTCGATTCTGTTCAAGGAAGACATGAGGAACAGGCCAGATACTTTTGGAAAAAGGATTTTCTTACCGACTTCTGTCTCGGTAACGTGATTTAAGTCAAGCTCAATTGTTTTCCTTCTTTATTCCGTACGGTGCAGCAACATTATTGTTTGCCTCTCCTTCTTCACAAGATTTTGCCCTTTTTGTGTCACTACAACAAATGGCCTCACTTTTTTTTTCAGTATCTCCTAAACAACGACTTTATCAAACAAAATGGTGAGACACATGATTTCTCCGCCGATGCTTTGGCCAGAAACTTGCGCGACTATATCCAGAACGTTCCGATGACGAAGACTCAGATGGTAACCCCCCTCTTCTTCATTAGTTAGGGTTTAGTGTTCGAATCAAGCCTAATGCCATGTATATTTTTTGCCGTTTCATTGAGCATCTCTTGAACCCAGCAAATATATTTGGCAATTTTTCGTGCCTTTTTACTTTTCAATCCCTGAATGGACAGATAATATTACCTGTGCTCCACCACGACCACTGGTCTCTGTACGCCATAGACATTGCACACAGGCGGGTGGACATTATGGATTCGAACAACTACCTTTTGATTGGAACACTGGAGAGCGACCACCACCGTGCGTTGTCCAAACGCATCGTCAAGGGTCTGAGCGATGCGCTGCAGGAGGTAGCGCCTAAGAGTTTCTGCAGGTTCGGCGGCTTCAGGAGGAACATGATGAAGTGCCCAAAAATGCAAATATGCTCCAACGACTGTGCATTTTACATCATGCGGTCCATGGAGGCTTACGACGGCAACCGGGAGTCTATCGAGACTCTTTCCATCCCGGTAACTACAGCAATCACACCCTAGCATCGGTGTAGTGACACATTCATCGCTCAGTTTCACATTATTATATACCAATTCACGAACAACATTCTTTTCGTAGACCGACTCGTCGCTTGTCCGGTCAAGCATCCTCCACCAGCTGATGTTCAGCGAGTACAACCAAGACGCGCCTCTTCATCCTGACATCGAGATGTTCCGCTGA
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CDS seq | ATGCCATCTGACGTGTCGCTGAGCGTTCAGCTCAGGGACTTCTTATTGACCAATGGTGGTCGTATGGACAGCGTGAAATTGCTAGAGATTGACAGCTCCGTTGCGTATGGATACGATGTACTCAAATCATTCTCCAACGGGAATCTGACAGAGGGGCTATTCATAGACGCGTTCAGCTCGATTCTGTTCAAGGAAGACATGAGGAACAGGCCAGATACTTTTGGAAAAAGGATTTTCTTACCGACTTCTGTCTCGTATCTCCTAAACAACGACTTTATCAAACAAAATGGTGAGACACATGATTTCTCCGCCGATGCTTTGGCCAGAAACTTGCGCGACTATATCCAGAACGTTCCGATGACGAAGACTCAGATGAGCGACCACCACCGTGCGTTGTCCAAACGCATCGTCAAGGGTCTGAGCGATGCGCTGCAGGAGGTAGCGCCTAAGAGTTTCTGCAGGTTCGGCGGCTTCAGGAGGAACATGATGAAGTGCCCAAAAATGCAAATATGCTCCAACGACTGTGCATTTTACATCATGCGGTCCATGGAGGCTTACGACGGCAACCGGGAGTCTATCGAGACTCTTTCCATCCCGACCGACTCGTCGCTTGTCCGGTCAAGCATCCTCCACCAGCTGATGTTCAGCGAGTACAACCAAGACGCGCCTCTTCATCCTGACATCGAGATGTTCCGCTGA
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Protein seq | MPSDVSLSVQLRDFLLTNGGRMDSVKLLEIDSSVAYGYDVLKSFSNGNLTEGLFIDAFSSILFKEDMRNRPDTFGKRIFLPTSVSYLLNNDFIKQNGETHDFSADALARNLRDYIQNVPMTKTQMSDHHRALSKRIVKGLSDALQEVAPKSFCRFGGFRRNMMKCPKMQICSNDCAFYIMRSMEAYDGNRESIETLSIPTDSSLVRSSILHQLMFSEYNQDAPLHPDIEMFR |
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Function | - |
Transcripts
Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
OsIR64_03g0025740 | OsIR64_03g0025740.01 | Chr03 | 25242886 | 25244342 | + | NAM | ||
CDS seq | ATGCCATCTGACGTGTCGCTGAGCGTTCAGCTCAGGGACTTCTTATTGACCAATGGTGGTCGTATGGACAGCGTGAAATTGCTAGAGATTGACAGCTCCGTTGCGTATGGATACGATGTACTCAAATCATTCTCCAACGGGAATCTGACAGAGGGGCTATTCATAGACGCGTTCAGCTCGATTCTGTTCAAGGAAGACATGAGGAACAGGCCAGATACTTTTGGAAAAAGGATTTTCTTACCGACTTCTGTCTCGTATCTCCTAAACAACGACTTTATCAAACAAAATGGTGAGACACATGATTTCTCCGCCGATGCTTTGGCCAGAAACTTGCGCGACTATATCCAGAACGTTCCGATGACGAAGACTCAGATGAGCGACCACCACCGTGCGTTGTCCAAACGCATCGTCAAGGGTCTGAGCGATGCGCTGCAGGAGGTAGCGCCTAAGAGTTTCTGCAGGTTCGGCGGCTTCAGGAGGAACATGATGAAGTGCCCAAAAATGCAAATATGCTCCAACGACTGTGCATTTTACATCATGCGGTCCATGGAGGCTTACGACGGCAACCGGGAGTCTATCGAGACTCTTTCCATCCCGACCGACTCGTCGCTTGTCCGGTCAAGCATCCTCCACCAGCTGATGTTCAGCGAGTACAACCAAGACGCGCCTCTTCATCCTGACATCGAGATGTTCCGCTGA
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Protein seq | MPSDVSLSVQLRDFLLTNGGRMDSVKLLEIDSSVAYGYDVLKSFSNGNLTEGLFIDAFSSILFKEDMRNRPDTFGKRIFLPTSVSYLLNNDFIKQNGETHDFSADALARNLRDYIQNVPMTKTQMSDHHRALSKRIVKGLSDALQEVAPKSFCRFGGFRRNMMKCPKMQICSNDCAFYIMRSMEAYDGNRESIETLSIPTDSSLVRSSILHQLMFSEYNQDAPLHPDIEMFR
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Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
Leaf | Root | Panicle | |
FPKM | 0.0 | 0.0 | 0.0 |
Homologues
Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
---|---|---|---|---|---|
Leaf | Root | Panicle | |||
Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
Nipponbare | IRGSP 1.0 | MSU | LOC_Os03g41780 | RBH | 0.0 | 0.0 | 0.0 |
Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_03g0026350 | RBH | 0.0 | 0.0 | 0.0 |
KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_03g0026090 | RBH | 0.0 | 0.0 | 0.0 |
CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_03g0026150 | RBH | 0.0 | 0.0 | 0.0 |
ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_03g0026180 | RBH | 0.0 | 0.0 | None |
PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_03g0025950 | RBH | 0.0 | 0.0 | 0.0 |
Minghui 63 | MH63RS3 | HZAU | OsMH63_03G0407700 | SBH | 0 | 0 | 0 |
IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_03G0412100 | RBH | 0 | 0 | 0 |
LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_03g0025990 | RBH | 0.0 | 0.0 | None |
KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_03g0026010 | RBH | 0.0 | 0.0 | None |
GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_03g0026120 | RBH | 0.0 | 0.0 | None |
LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_03g0025870 | RBH | 0.0 | 0.0 | 0.0 |
LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_03g0025770 | RBH | 0.0 | 0.0 | None |
N22 | OsN22RS2 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |