Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsIR64_02g0032960 | OGI:02088560 | 16/16 | IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | Chr02:32465643-32466803 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | TCATCCTTCAATCGCCAGGAGCCTCCTCCTCTTGTAGTTCTCCTTGAAACACGCTTGCCTTAACATCTTCGTCCAATCATCCAGCTTAGCATCAGGACTTTGCTCGATGAGCTTCTTTGTTTGCTGCAACATCTCCACTGCGTTCCTAGTATTATCTTCGTCTTGGCCAGTCTCCATCCCTAGCTCCTGCAGGACATGAAATTCAGATTTGCTCAGATATAAACTTAGACACTATACTATTTACATAGATGGAAAATTACGGGAAAACTCTTATGGTAAGGTAATGGAATTGTTGGTAAATGACTTCGCCCATCAAAGATCACCAGGATAGAGGACTACAGGGGCGTGTGTGTATCAGGGTTTTCAATTTCGAAATTGGATTTTATGCCGGGGGTGACCAAAATTTCGGAAATTTCTGGCCGGAATTATTTGAAAATTTAACTGAATTTGAATAAAATTTGACAAATTCACAAAAAATTGCAAAAAAACGAAAATTTCGGACGAGATTTGAGCATACCGGTGGGGGCCGAAATTTCCGAAATTAATTTCGAACCGAAATTTCAAACCCTGGTGTGTATACCTCCTCCATCTAATCGAGAGAGAAAAAATGAGATAGGAAAAATACTACCTGGACATTCTTGATGAGCGTCTCCAAGCTCTTGACCTTGCGGTGCGGCCATCGTGGGATGCCGAGCACCCTGCATCTCCTCTTCAGAAGCGTGAGCCCGACGTTGAGCTCCTGCGCCGCCTGCTTGATCGGCAGGCAGAAGTACTGGGACACGAGCTCGAACGTCAGTGTCTTTTCCCCTGATTGACGGCCGCTCGGGAGTCGTTGCAGCTGCAGCTCCATGGCCTTCTCATGATCCAGCTTCTCTTCCTTCTCGCCGCCATCTTTGTCGCTCCTGTGATAGGCGTCTTCTTTCATGTCGCCCCAAATGCTCAGGATATCTCCGTCGAAGAGGGTGTAAAGCTCGTCTGCATTGATAGATAGAAAATACATGAACTTTCAAAACTTTCTACTGCATACTTGCTTGAGTACATGATGCTTCATTCTTCCTCGGTACAGAGACCTGTATTACCTTGCACGAAGTTGCTATGAACACTAGTGCTGAAGTGGTGAGTGAAAAAGGGCTCATCCTCTCCCAGCAGCAGGTAATCAAG
More
|
||||||||||
| CDS seq | ATGAAAGAAGACGCCTATCACAGGAGCGACAAAGATGGCGGCGAGAAGGAAGAGAAGCTGGATCATGAGAAGGCCATGGAGCTGCAGCTGCAACGACTCCCGAGCGGCCGTCAATCAGGGGAAAAGACACTGACGTTCGAGCTCGTGTCCCAGTACTTCTGCCTGCCGATCAAGCAGGCGGCGCAGGAGCTCAACGTCGGGCTCACGCTTCTGAAGAGGAGATGCAGGGTGCTCGGCATCCCACGATGGCCGCACCGCAAGGTCAAGAGCTTGGAGACGCTCATCAAGAATGTCCAGGAGCTAGGGATGGAGACTGGCCAAGACGAAGATAATACTAGGAACGCAGTGGAGATGTTGCAGCAAACAAAGAAGCTCATCGAGCAAAGTCCTGATGCTAAGCTGGATGATTGGACGAAGATGTTAAGGCAAGCGTGTTTCAAGGAGAACTACAAGAGGAGGAGGCTCCTGGCGATTGAAGGATGA
More
|
||||||||||
| Protein seq | MKEDAYHRSDKDGGEKEEKLDHEKAMELQLQRLPSGRQSGEKTLTFELVSQYFCLPIKQAAQELNVGLTLLKRRCRVLGIPRWPHRKVKSLETLIKNVQELGMETGQDEDNTRNAVEMLQQTKKLIEQSPDAKLDDWTKMLRQACFKENYKRRRLLAIEG |
||||||||||
| Function | Protein RKD1 [UniProtKB/Swiss-Prot:Q9M9U9] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsIR64_02g0032960 | OsIR64_02g0032960.01 | Chr02 | 32465643 | 32466803 | - | NAM | ||
| CDS seq | ATGAAAGAAGACGCCTATCACAGGAGCGACAAAGATGGCGGCGAGAAGGAAGAGAAGCTGGATCATGAGAAGGCCATGGAGCTGCAGCTGCAACGACTCCCGAGCGGCCGTCAATCAGGGGAAAAGACACTGACGTTCGAGCTCGTGTCCCAGTACTTCTGCCTGCCGATCAAGCAGGCGGCGCAGGAGCTCAACGTCGGGCTCACGCTTCTGAAGAGGAGATGCAGGGTGCTCGGCATCCCACGATGGCCGCACCGCAAGGTCAAGAGCTTGGAGACGCTCATCAAGAATGTCCAGGAGCTAGGGATGGAGACTGGCCAAGACGAAGATAATACTAGGAACGCAGTGGAGATGTTGCAGCAAACAAAGAAGCTCATCGAGCAAAGTCCTGATGCTAAGCTGGATGATTGGACGAAGATGTTAAGGCAAGCGTGTTTCAAGGAGAACTACAAGAGGAGGAGGCTCCTGGCGATTGAAGGATGA
More
|
|||||||
| Protein seq | MKEDAYHRSDKDGGEKEEKLDHEKAMELQLQRLPSGRQSGEKTLTFELVSQYFCLPIKQAAQELNVGLTLLKRRCRVLGIPRWPHRKVKSLETLIKNVQELGMETGQDEDNTRNAVEMLQQTKKLIEQSPDAKLDDWTKMLRQACFKENYKRRRLLAIEG |
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.000000 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_02g0136000 | SBH | 0.076285 | 0.0 | 0.489991 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os02g51090 | RBH | 0.0 | 0.0 | 0.000000 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os02g0136000 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_02g0033480 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_02g0033570 | RBH | 0.0 | 1.110346 | 0.881215 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_02g0033480 | RBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_02g0033060 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_02g0033170 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_02G0511600 | RBH | 0.221126 | 0.0897285 | 0.1653065 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_06g0008340 | RBH | 0.0 | 0.0 | 0.042883 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_02G0540900 | RBH | 0.41768 | 0.021371 | 0.178365 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_02g0033240 | RBH | 0.0 | 0.093747 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_02g0033020 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_02g0033360 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_02g0033210 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_02g0032830 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_02G033520 | RBH | 0.000000 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_02g0033250 | RBH | 0.0 | 0.0 | 0.0 |
