Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsIR64_02g0019240 | OGI:02056310 | 16/16 | IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | Chr02:20489824-20491139 | ||||||||
| Gene Symbol | CCH, OsATX1, OsCCH, OsaCCH, ATX1, OsHMP14, HMP14 | ||||||||||
| DNA seq | GAGGAATTCGACTGCGTATATTTCGAAACCATGCGGATCGGACTGGATTTATTCATAATTCGGATTTCAACTGCTACACTGGCCGGCAACAGATAACCATATTGCAACACTGCTATGATGCAGATCACACAAGCTAAGACTGCACTCCCCGTTTACTAGAGGCTAAATGCAAAGAGAGTAAATCAATCGCTTGGAGTTCAATTTCCAGATGTCAATGCAAGCATTATGTGTGATCATCAAGCATCAGCCTTGGCCGGAGCTGCTTCTGGAGCAGCAGGAGCAGGAGGAGCAGCAGCAGCAGCGATGGCAGGTGCTTCTGCCGCGGTGGTGGTGGGTGGAGCAGCTTCAGCTTCAGCTTCAGCTTCTGCTGTTGCCGGAGCAGGAGCAGGAGCAGCTGCAGCTGCAGAATCCGAAGCGGCTTCTGCAGCCTCCCAGAAGGAGGTCTTCTTCCCTGTCTTTGAGACCGTCTGGAAAACGTCTTCTGGCTTGACATTGCCCTTCACCGTCACCTTCTGCTGCTCCATGTCTATGTCAAAGGTCTCCACGCCTGGTTCCATGAGATATATCGAGCATAAGCAATTGTGATCGTTGGACAATTTACACTATATGGTATTCTGATTTAGTTCAGCAATTAGATGTCTGGATTTCCCGGCTACGGATTAATGATTGATCAGTTTCTTCACCTCAAGTTGACCATTGCGGCCAGCTAGCCGTTGCTGACCACACGTCAGTTTCGTTGTTGTTAAACAGATTTAGATCAAACAGTTTTCATATATCACTAATAAATAAATAAAGGCATTCTTAGTCTTGGAACAGAAAAACAGTTTCAGCTCAGAGAAATTAGTCACCTTCCATTTTTGTGAGAACTCTCCTTACGGCTCCAGCACAACCTTGGCATGACATACCGACCTTGAGGACAACAGTCTGCATATCATATGAGATTGAACATTTTTATTATCTTGTATTCTGACATTGCCGTTTAGCAGACCAACAAGCATCAGTTTTGTATCTAACAAGGGGACTCATGGCCAAAATTCAGCAAAATTCTCTGTATCTAACAAGAACCTAACTTCAGCAACCTCATGGCCTACAGCCTACTTCTTTGTATCTGAAACTCATCCAGAAAAACAAACAAAAAAAAAAAGAAGCAAAACGAGAAATTTCATCCATTCCTCCTACTCCATCCTACTGACTGCAACTATGCAATCTGAGAAGGCGTGGAAGGAGATTGTTACCTCAGCGGCCATGGTTCACGGCAGTAGGAACAAGAAGCAGCAGCAGCAAAAAGAACAGGACTCGAATTCGGGAAATAACTT
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| CDS seq | ATGCAGACTGTTGTCCTCAAGGTCGGTATGTCATGCCAAGGTTGTGCTGGAGCCGTAAGGAGAGTTCTCACAAAAATGGAAGGCGTGGAGACCTTTGACATAGACATGGAGCAGCAGAAGGTGACGGTGAAGGGCAATGTCAAGCCAGAAGACGTTTTCCAGACGGTCTCAAAGACAGGGAAGAAGACCTCCTTCTGGGAGGCTGCAGAAGCCGCTTCGGATTCTGCAGCTGCAGCTGCTCCTGCTCCTGCTCCGGCAACAGCAGAAGCTGAAGCTGAAGCTGAAGCTGCTCCACCCACCACCACCGCGGCAGAAGCACCTGCCATCGCTGCTGCTGCTGCTCCTCCTGCTCCTGCTGCTCCAGAAGCAGCTCCGGCCAAGGCTGATGCT |
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| Protein seq | MQTVVLKVGMSCQGCAGAVRRVLTKMEGVETFDIDMEQQKVTVKGNVKPEDVFQTVSKTGKKTSFWEAAEAASDSAAAAAPAPAPATAEAEAEAEAAPPTTTAAEAPAIAAAAAPPAPAAPEAAPAKADA |
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| Function | Copper transport protein CCH [UniProtKB/Swiss-Prot:O82089] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsIR64_02g0019240 | OsIR64_02g0019240.01 | Chr02 | 20489979 | 20491139 | - | NAM | ||
| CDS seq | ATGCAGACTGTTGTCCTCAAGGTCGGTATGTCATGCCAAGGTTGTGCTGGAGCCGTAAGGAGAGTTCTCACAAAAATGGAAGGCGTGGAGACCTTTGACATAGACATGGAGCAGCAGAAGGTGACGGTGAAGGGCAATGTCAAGCCAGAAGACGTTTTCCAGACGGTCTCAAAGACAGGGAAGAAGACCTCCTTCTGGGAGGCTGCAGAAGCCGCTTCGGATTCTGCAGCTGCAGCTGCTCCTGCTCCTGCTCCGGCAACAGCAGAAGCTGAAGCTGAAGCTGAAGCTGCTCCACCCACCACCACCGCGGCAGAAGCACCTGCCATCGCTGCTGCTGCTGCTCCTCCTGCTCCTGCTGCTCCAGAAGCAGCTCCGGCCAAGGCTGATGCT
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| Protein seq | MQTVVLKVGMSCQGCAGAVRRVLTKMEGVETFDIDMEQQKVTVKGNVKPEDVFQTVSKTGKKTSFWEAAEAASDSAAAAAPAPAPATAEAEAEAEAAPPTTTAAEAPAIAAAAAPPAPAAPEAAPAKADA |
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsIR64_02g0019240 | OsIR64_02g0019240.02 | Chr02 | 20489824 | 20491139 | - | IsoSeq | ||
| CDS seq | ATGTCAAGCCAGAAGACGTTTTCCAGACGGTCTCAAAGACAGGGAAGAAGACCTCCTTCTGGGAGGCTGCAGAAGCCGCTTCGGATTCTGCAGCTGCAGCTGCTCCTGCTCCTGCTCCGGCAACAGCAGAAGCTGAAGCTGAAGCTGAAGCTGCTCCACCCACCACCACCGCGGCAGAAGCACCTGCCATCGCTGCTGCTGCTGCTCCTCCTGCTCCTGCTGCTCCAGAAGCAGCTCCGGCCAAGGCTGATGCTTGATGATCAC
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| Protein seq | MSSQKTFSRRSQRQGRRPPSGRLQKPLRILQLQLLLLLLRQQQKLKLKLKLLHPPPPRQKHLPSLLLLLLLLLLLQKQLRPRLMLDDH |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
| RI | Chr02 | 20490672 | 20491139 | - | OsIR64_02g0019240.01 | OsIR64_02g0019240.02,OsIR64_02g0019240.01 | All |
Expression
| Leaf | Root | Panicle | |
| FPKM | 1.166595 | 3.405821 | 5.821943 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_02g0530100 | RBH | 3.202925 | 2.920199 | 13.871611 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os02g32814 | RBH | 1.189844 | 0.571326 | 1.936702 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os02g0530100 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_02g0019750 | RBH | 3.334991 | 14.449368 | 11.313255 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_02g0019860 | RBH | 0.238979 | 0.0 | 7.319078 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_02g0019800 | RBH | 9.245039 | 47.173965 | 28.026075 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_02g0019590 | RBH | 0.821462 | 1.286970 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_02g0019530 | RBH | 21.493198 | 32.194424 | 34.327461 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_02G0322400 | RBH | 23.9021005 | 38.4318735 | 6.3115955 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_02G0342300 | RBH | 15.361999 | 8.6030865 | 29.312664 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_02g0019770 | RBH | 0.231973 | 0.141290 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_02g0019510 | RBH | 0.516424 | 16.721487 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_02g0019920 | RBH | 9.293382 | 0.000000 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_02g0019650 | RBH | 0.527654 | 1.422986 | 11.649452 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_02g0019430 | RBH | 0.408658 | 3.120013 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_02G019870 | RBH | 3.673122 | 2.214425 | 20.029442 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_02g0019590 | RBH | 6.139062 | 37.999447 | 32.603081 |
