Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsIR64_02g0017490 | OGI:02050730 | 16/16 | IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | Chr02:18407803-18413241 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | TCAGAGCTTGTTAGTTTCCCATGGGGGCAGAAGAAGAAGTGCCCCACCAGATTTCTTCTTTTTCTTGGTTTGTGTAGGTTCTTGAGTTGAGACACAAACAGATGCTTTGCCAAATGTGAGTCTCACATATGAAGTTGTAGAGCTCTAGGAATGGGGAACTATGGCTTGCATATCAACTCTAGCTGAACCACCATGTTCTATAGAAACTTTAGCCTTGGCATTTAACCCTGACCAGCTCCTGGGTCTCCATTGGTGCCTGCAGTCAAATATATTTGCATATGTTGAACTTGTAGTGATTACAAGTAAACTTTGCAAGGGAGAAAGATTTGCACATACCTTGTTCTTGGTTTTTTTTTTTGGGCCATGGATTGTTGGGTTGTACTTGTTGTACACAGGGTGACTGTCTTCGTCTTCGTGCTTTGAGCAGAACTCCCTGCTGTGCTTGACAACACCATTTGCTGACCTGGAGATAGAGCTGGGACTTGGGCCGTGCCGGGCTAGCACGGCCCGACCCGACCCATCGTGCTTCGTGCTAGAATGGGCCGTGCCGGCCCAGCACGACCTGCTAATCGTGCCGGGCCGTGCTAGGCCGAGGTGGAGAAGACAAGGCCCAAGCACGGCCCAAAGACATGTCGGGCCTCTTCGAGCTGTGCCGGCCCAAGCACGGCCCAGAATTACCTGAGGAGTCGTGTCGTGCCTAGGGTTTTCGCCGGGGCACGCGCGGCCGCGCTGACCCGCCGCCGCCGCCGCATGCTCCCTGCGGCGCTGCCCGTGCCAGCCGCCGACGCCGAGAGCCGCCGCCAAGGACCGACGTCGTGCGGCCGCACATAGCCGCTGCCGTCGCGCCGCGCGGCCCGCGCCGAGGGCTGCCTACGCCAAGAGCCGCCGCCGCCGCCGAGGACCGACGTCGCGCGGCCACGCATAGCCGCTGTTGCCATGCCGTGCGGCCTGCACCGAGGGCTGCCGACGCCGAGAGCCGCCGCCGCCGAGGACCGACTCCCGACGCCCCGGGTGCCTAGGGTTTTCGCCTCTGACCATGTGCTCTGCCCGATGCTGATTGATAAATGAAAAAAGAACAGGGGAAAAATCAGGGTAAATGAGAGAGGAAACTGAAATAAGAAATAAGGGAGGGAAAAATAAGAGAGGGAAAATGAAAAAACAATGAGATAATAATGTACATGGCTTAATTAACACAATTAGAATTGACATAATATCGTAAATAACTTGAGACAATAAAATTGGGGGAAAATATATATGTTAATAATTTGAATATATAGTTGTTGCCTCGTTAAAAACCTTACGCCCTAAAGTAGGGTTCCCCGTAAGGAAAAAAGAGTACAATAACTATTTTACATTATACCATCAATTACTCCAGATCAACACCACCATCATCTTTGGTAAGGCAAATTTCCGCCAATGCGTCTTCCATTGCATCGGCAAACTCTTGATCATGTAGACAGTGTTGCGTTAGTTCATCTGCTTCCATCCAGTCTTTAAGACAAAAGATTGACTCAACCGTCTCGGGTGTCAGGCATGACCATCGTTCTTCAATAATTCTTCCAGTAACGTTGAATGCTTGCTCAGAAGAGACGGAGGAGGCCAGAACCAGAAGAATATCTCAAGCAAAGTGAGCTAACACAGGAAGAGTTCGCTCTTTCTCTTTCCACCACCCAAGGAGATCGACATCGTGGCCATCAAGCGTCGGATCATGCTCAGTATGATTGGTGGCGAGGTAGTGGTTAAGCTCTGAATCCGGGTTCCATGTTGATTTGTTCTCTGAGGATGGAGAGGCTTGGTCGTTGCCTATATACTGCATCCACAAATTTACTGCACTTGACTTGCTTGCTTTCTTTTGTGAGGTCTGCTCCGGAACTCGGGGAGTACCACCAAGCTTGGTTCGGTATAGACGGAAAACCCTATGGAGCTCATCATTGACATGTTGAAAAGCTTCAGAATAATCAAGCCCCACTGCATCACCTATTGAGTTCATGGCAACCTTGGCGGTTTCCAACTTTTGCGAGGATCAAGTATCAAAGCAAAGCAATAAAGGTGAGGTATAGCAGTGAAGTATTTGAGATTTTTTTCTTCCATGGGTTTAATAATGGAAGACAATACGATCAGAACGGTTTTCATCAAAAACAAGTGCCAGCTTCCAAATCCACTCAAGCACCAAACAAGATGTAGGATAGTAAATTCCTGATAATTGAGCTATAGCATTATAAAATGGCTTCAGAAATTTATGCACACGTGTAGCGATCTCCCACTCCTGATCGGTGAGAATCACAATCTCACCATCGCCGTTGTCATCGGTATCCTTCATTCATTTTTTTGAAATAGTAGACGGTAGGAGATCTACCGGATATATTAGAAGAAGAGAGTTGACCCTGTTTATAAGGAAAACCGGGCCCAAAAACCTTACAACTGCATGGTTTGCTAAGGGGAAACTAGCAAACCCTTACATAGAAGACACAAAAAAGCCTGTAACAAAACTACGAACCACTAAAGAGACCGAGGGAAGAGCATGACCTTTAAGGCGAAGCCTCCAAGGAGGTGAACAACGACCAAAGCCGTTGCTGACGCCCGCCCAAAAGTTGGACTGGGCTTTCACCCAAAGGTGAGAGAGAGTCCACAAGGAAACACCTCCAAGGAGGGAACGGCACCCGCAGGAGTCAATGTTGCCGATCCTGGAAGACCAGGCAAGGCTTACACCCAACACTCTCACAAAAGGTGCAGGACCTCCAAGAAGCCAGAGCAAGAGTGTTGAGTGTTATCGTTGCCCAGCTCATCAGCTGACCCGATGTAGCAGCTTCGATTCCGCCTTAACACAAGAACTCTCGCACCCTAGAGGTAAGCACCCCGGTCCAAACTCGGAAATACAGCAGGTTCACACGGTCACAGGGCACAAGAAGCACCGGCGAGGCCCAAAATCCCTGATTACAGTCAGACTGGACCAACCCCACAGACAAACAAACTCCTCAACCACTGAGAGACTCCACGGCTGGATCTGGAAGCAGACTGCCAAAAGAAGGGAGGAGCAACAAGGAGGGAAGGAGGCAGGCTGGCCTAGGGAAGAATTGAGAGCTGGAAGCAGGGCAAATGGGCATCGGTGTCAACCATGTAACTGGCGAGGAGCTCCAGGCTTCGCGGGATGAACCTTTCGACTGCAGAAACCACCTCCAACTTCACCACCAGCACAGAGAGAGGGGCACTGGGTGATCAGCAAGGCTCCTAGACAACTAAGAGGAGGGGGGCGGCCTCCCCAACAGCTTGTGCCAAGAGGCGGCAAATAGAGAAGAGAGAAAGAAGGAGGACGGAAAGGGAGACGCATGCCTCCCCCAACTGCTAGTGCCGAGAGACGGCAGCGAGAGGAAGAGAGATAGGAGGGAAGGAAGGAGAGAAGAGGGTGGTTTCAGGGGAATGGGGGTGGCCGGAGACGCTAGCACACCCCCCAGTACGACCCGACGTGCCGCGACTGCAAGAGCCAGCTGCCGCCGCAGCCCCACAAGAGACGGCCTCTGCCGCCCACATGCCGGCCACTGCCCACGTGCAAGCAACACCGCTGCCGCACAAGCCCTCACGTTGCAATAGCCACGCCGCCTCACCCCAACGCGCCGCCGACCACCGGAGCTGGCAGCCGCTGCAACGGCACCGCGAGCGCCGGCAACCGACCACACGCGTGAACATCGCTGCCTCACCACCCATCGTGCTGCCCTGTGAGCCGCCACGGGCCGCAGCGGCCACCGTTGCATCACGCCACCCCACGATGCTGCCACCAGAGCTTTCCCAGATCCGACGACAGCGGTACCGGATCTGCCGCCGCCTAACCGGGAGGCCTCCCTGCCGGCACTCCTCGACACCAGCGAACGCCAACTCCCCCACGTAGAGAGGGGGCGCCGCCGCGGAAGAGACCCTGCCGCCGCCATCCTAGTTTCTAGTCGGCTTTGCCGGCGGTGAGCTCCGGCGGTGGTGAGGTAGAGGGAGGGGGAGAGGGGAGCAGCGGCGGCGGCGGTAGGGTTTGCCCCCCGTGTCGCCTGCGCGTGGGCGATGCAGGGGGGAGGGGGCAGACTCTCGGATAATTGTCTAGTTGTATCCTTCATTCTGACATGCATCTAATTGATGAAAAGAGAAATTAACTCCTCCTACCCTTTTAACTGTCGCAGCAACAGGTATGTTTTGTTCCACCTATGTTTGACATCAATGCCAAACATCCGTCCAGGTTTCTTCTTCGCTTTACAGTAGTCCTGGAACCTCGCTTTGACCACTGTGTTACCTCCTATGATACGAACAGAACGACGAATTTTGTTTAACAATTTATCCAGAACAATTATGCCTGCAAAACAAATAGGTCGCATACATTAAAATAAATAAGCAATATGCCGCATACACTAAAATCAATAAATTATTAATAACATTACTACCTGGTTGAACGATGAGATTGATGATGTGACAAATGAATCTCTGATGAATAACGAAGCCTCCAACATAACTTCGCAGATCCGACTCCAAAATCGACATGGCCGTTGTGTTTGCTGATGCATTGTCAAGAGTAATAGAAACAACCCTAGATTGTAAATTGAATTCTCTCAATACCTCTAGGATTTTCGTGGCTATGGCATCTCCCGTGTGTGACGTCATGAGTTGGAACCCTATGACTCTCTTATTTAATGACCGATTGTTGTCAAGATAATGAAGAACAACACTAAGGTAAGATGTTCTTTGGTGTTGGGATGTCTAGATATCCGATGTCACAGCAAATGAAAAACTAGTAGTACTGAAAGTTTGCTTCAACACACTCAACTTAGAATGATATATAGCTGTAATATCGTTCTTGGTGGTTTTCCTAGAAACCTTTTTGTACTATGGGCGAAAAGCTTTTTGGATCATTCTCTCAAAATGTTTGCTTTCCCCCATTCTAATTGGTAGATCCTCAGCAATAATAAACTTAGCAATCTCTTCTCTAGCTATTTTTGGATCATAGATCCATGTACTTACAGAACCGTCAGAGCCGAAGGACAATTGTTTCTGTCTTGCTCCTGCCGGTGCCTTGTTCTTGAGATGCGCCAAGTAATGCCGGTTGAGATGGCCTGTCCCTGAAGAAGTAGCTGCAGACAAAATTTTGTCGCAATATTTGCATTGAGCACGAGGTATACTTTTACCGTCAACCATCTCGGTGAATACTTCGAAGTGCTGCCAACACTCCACTCTTCTGGCAGATGGCTGGTTATCGGAATTTGGTGTGGGCAACGTCATGGCGTTGGCGTCGAAGGAGAAGTTGGCCTCGCTAGGAGATGGCTGATCATCGTCGTCGCCCTCCAGACCATCCATGTGGCGATCATGCATCCCGTAGTCATCCATGCCCGGGGATAGCTGTCGGGCATCGACCGACCTCTGGGATGGACTAGTTGTTGACTCGTGTTGACGCTTTTTGGACCTCCGCAT
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| CDS seq | ATGCGGAGGTCCAAAAAGCGTCAACACGAGTCAACAACTAGTCCATCCCAGAGGTCGGTCGATGCCCGACAGCTATCCCCGGGCATGGATGACTACGGGATGCATGATCGCCACATGGATGGTCTGGAGGGCGACGACGATGATCAGCCATCTCCTAGCGAGGCCAACTTCTCCTTCGACGCCAACGCCATGACGTTGCCCACACCAAATTCCGATAACCAGCCATCTGCCAGAAGAGTGGAGTGTTGGCAGCACTTCGAAGTATTCACCGAGATGGTTGACGGAGGTAACACAGTGGTCAAAGCGAGGTTCCAGGACTACTGTAAAGCGAAGAAGAAACCTGGACGGATGTTTGGCATTGATGTCAAACATAGGTGGAACAAAACATACCTGTTGCTGCGACAGTTAAAAGGTGCCCCTCTCTCTGTGCTGGTGGTGAAGTTGGAGGTGGTTTCTGCAGTCGAAAGGTTCATCCCGCGAAGCCTGGAGCTCCTCGCCACTCTCAATTCTTCCCTAGGCCAGCCTGCCTCCTTCCCTCCTTGTTGCTCCTCCCTTCTTTTGGCAGTCTGCTTCCAGATCCAGCCGTGGAGTCTCTCAGTGGTTGAGGAGATCGGCAACATTGACTCCTGCGGGTGCCGTTCCCTCCTTGGAGGTGTTTCCTTGTGGACTCTCTCTCACCTTTGGGTGAAAGCCCAGTCCAACTTTTGGGCGGGCGTCAGCAACGGCTTTGGTCGTTGTTCACCTCCTTGGAGGCTTCGCCTTAAAGGTCATGCTCTTCCCTCGGTCTCTTTAGTGTTGGAAACCGCCAAGGTTGCCATGAACTCAATAGGTGATGCAGTGGGGCTTGATTATTCTGAAGCTTTTCAACATGTCAATGATGAGCTCCATAGGGTTTTCCGTCTATACCGAACCAAGCTTGGTGGTACTCCCCGAGTTCCGGAGCAGACCTCACAAAAGAAAGCAAGCAAGTCAAGTGCAGTAAATTTGTGGATGCACATCGGGCAGAGCACATGGTCAGAGGCGAAAACCCTAGGCACCCGGGGCGTCGGGAGTCGGTCCTCGGCGGCGGCGGCTCTCGGCGTCGGCAGCCCTCGGTGCAGGCCGCACGGCATGGCAACAGCGGCTATGCGTGGCCGCGCGACGTCGGTCCTCGGCGGCGGCGGCGGCTCTTGGCGTAGGCAGCCCTCGGCGCGGGCCGCGCGGCGCGACGGCAGCGGCTATGTGCGGCCGCACGACGTCGGTCCTTGGCGGCGGCTCTCGGCGTCGGCGGCTGGCACGGGCAGCGCCGCAGGGAGCATGCGGCGGCGGCGGCGGGCACCAATGGAGACCCAGGAGCTGGTCAGGAGCTCTACAACTTCATATGTGAGACTCACATTTGGCAAAGCATCTGTTTGTGTCTCAACTCAAGAACCTACACAAACCAAGAAAAAGAAGAAATCTGGTGGGGCACTTCTTCTTCTGCCCCCATGGGAAACTAACAAGCTCTGA
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| Protein seq | MRRSKKRQHESTTSPSQRSVDARQLSPGMDDYGMHDRHMDGLEGDDDDQPSPSEANFSFDANAMTLPTPNSDNQPSARRVECWQHFEVFTEMVDGGNTVVKARFQDYCKAKKKPGRMFGIDVKHRWNKTYLLLRQLKGAPLSVLVVKLEVVSAVERFIPRSLELLATLNSSLGQPASFPPCCSSLLLAVCFQIQPWSLSVVEEIGNIDSCGCRSLLGGVSLWTLSHLWVKAQSNFWAGVSNGFGRCSPPWRLRLKGHALPSVSLVLETAKVAMNSIGDAVGLDYSEAFQHVNDELHRVFRLYRTKLGGTPRVPEQTSQKKASKSSAVNLWMHIGQSTWSEAKTLGTRGVGSRSSAAAALGVGSPRCRPHGMATAAMRGRATSVLGGGGGSWRRQPSARAARRDGSGYVRPHDVGPWRRLSASAAGTGSAAGSMRRRRRAPMETQELVRSSTTSYVRLTFGKASVCVSTQEPTQTKKKKKSGGALLLLPPWETNKL |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsIR64_02g0017490 | OsIR64_02g0017490.01 | Chr02 | 18407803 | 18413241 | - | NAM | ||
| CDS seq | ATGCGGAGGTCCAAAAAGCGTCAACACGAGTCAACAACTAGTCCATCCCAGAGGTCGGTCGATGCCCGACAGCTATCCCCGGGCATGGATGACTACGGGATGCATGATCGCCACATGGATGGTCTGGAGGGCGACGACGATGATCAGCCATCTCCTAGCGAGGCCAACTTCTCCTTCGACGCCAACGCCATGACGTTGCCCACACCAAATTCCGATAACCAGCCATCTGCCAGAAGAGTGGAGTGTTGGCAGCACTTCGAAGTATTCACCGAGATGGTTGACGGAGGTAACACAGTGGTCAAAGCGAGGTTCCAGGACTACTGTAAAGCGAAGAAGAAACCTGGACGGATGTTTGGCATTGATGTCAAACATAGGTGGAACAAAACATACCTGTTGCTGCGACAGTTAAAAGGTGCCCCTCTCTCTGTGCTGGTGGTGAAGTTGGAGGTGGTTTCTGCAGTCGAAAGGTTCATCCCGCGAAGCCTGGAGCTCCTCGCCACTCTCAATTCTTCCCTAGGCCAGCCTGCCTCCTTCCCTCCTTGTTGCTCCTCCCTTCTTTTGGCAGTCTGCTTCCAGATCCAGCCGTGGAGTCTCTCAGTGGTTGAGGAGATCGGCAACATTGACTCCTGCGGGTGCCGTTCCCTCCTTGGAGGTGTTTCCTTGTGGACTCTCTCTCACCTTTGGGTGAAAGCCCAGTCCAACTTTTGGGCGGGCGTCAGCAACGGCTTTGGTCGTTGTTCACCTCCTTGGAGGCTTCGCCTTAAAGGTCATGCTCTTCCCTCGGTCTCTTTAGTGTTGGAAACCGCCAAGGTTGCCATGAACTCAATAGGTGATGCAGTGGGGCTTGATTATTCTGAAGCTTTTCAACATGTCAATGATGAGCTCCATAGGGTTTTCCGTCTATACCGAACCAAGCTTGGTGGTACTCCCCGAGTTCCGGAGCAGACCTCACAAAAGAAAGCAAGCAAGTCAAGTGCAGTAAATTTGTGGATGCACATCGGGCAGAGCACATGGTCAGAGGCGAAAACCCTAGGCACCCGGGGCGTCGGGAGTCGGTCCTCGGCGGCGGCGGCTCTCGGCGTCGGCAGCCCTCGGTGCAGGCCGCACGGCATGGCAACAGCGGCTATGCGTGGCCGCGCGACGTCGGTCCTCGGCGGCGGCGGCGGCTCTTGGCGTAGGCAGCCCTCGGCGCGGGCCGCGCGGCGCGACGGCAGCGGCTATGTGCGGCCGCACGACGTCGGTCCTTGGCGGCGGCTCTCGGCGTCGGCGGCTGGCACGGGCAGCGCCGCAGGGAGCATGCGGCGGCGGCGGCGGGCACCAATGGAGACCCAGGAGCTGGTCAGGAGCTCTACAACTTCATATGTGAGACTCACATTTGGCAAAGCATCTGTTTGTGTCTCAACTCAAGAACCTACACAAACCAAGAAAAAGAAGAAATCTGGTGGGGCACTTCTTCTTCTGCCCCCATGGGAAACTAACAAGCTCTGA
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| Protein seq | MRRSKKRQHESTTSPSQRSVDARQLSPGMDDYGMHDRHMDGLEGDDDDQPSPSEANFSFDANAMTLPTPNSDNQPSARRVECWQHFEVFTEMVDGGNTVVKARFQDYCKAKKKPGRMFGIDVKHRWNKTYLLLRQLKGAPLSVLVVKLEVVSAVERFIPRSLELLATLNSSLGQPASFPPCCSSLLLAVCFQIQPWSLSVVEEIGNIDSCGCRSLLGGVSLWTLSHLWVKAQSNFWAGVSNGFGRCSPPWRLRLKGHALPSVSLVLETAKVAMNSIGDAVGLDYSEAFQHVNDELHRVFRLYRTKLGGTPRVPEQTSQKKASKSSAVNLWMHIGQSTWSEAKTLGTRGVGSRSSAAAALGVGSPRCRPHGMATAAMRGRATSVLGGGGGSWRRQPSARAARRDGSGYVRPHDVGPWRRLSASAAGTGSAAGSMRRRRRAPMETQELVRSSTTSYVRLTFGKASVCVSTQEPTQTKKKKKSGGALLLLPPWETNKL
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.000000 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os02g29410 | RBH | 0.035931 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_02g0017900 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_02g0018040 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_02g0017940 | RBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_02g0017790 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_02g0017710 | RBH | 1.528720 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_02G0289600 | RBH | 0.1251645 | 0.4340445 | 0.358212 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_02G0310400 | RBH | 0.014903 | 0.0498055 | 0.0146195 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_02g0018000 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_02g0017570 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_02g0018130 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_Ung0009540 | RBH | 0.130753 | 0.0 | 0.058447 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_02g0017610 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_02G018060 | RBH | 0.000000 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_02g0017800 | RBH | 0.0 | 0.0 | 0.0 |
