Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsIR64_02g0009710 | OGI:02022240 | 16/16 | IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | Chr02:7606922-7609658 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | AACCTTTCGTCTCAAACAAAAGATCACATAATCTGTCCCCATCTCCCATCCAAGAAGAACTCACATACCAACCATGCCTTGGGCTGAAAGCTTGCTGTTCCTCCTCCTCTTGTTCTCGCTGCCCATTCCCTTCTCCCATTCTTGGTCCTTTGATTATCCCAGCCCCATTGCCAACATTAATTCTCTTTGGACGAACAACAATGCCACCATCCCATACAGTGCAACCTACCCAGATGGTTCAACGATCAGAGCGATTCTTGTTAGGCAGAATCCTACATGGTATAGTCCATTCTTCGCATGTGGTTTCATCTGCACCGCTCCTTGCAATGATTTTCTCTTTGCCATCTTCTCGGTGTCCGTTGGTGATCCGAGCAACCCTGCCTTCAATACCTCGTCCATGCCACGGATCATGTGGACAGCCAACAGGTCCCGTCCAGTGAAGGATAATGCGTCACTCCAGTTCAAGGATGGCAATCTCATACTGCGAGACTTCGATGGTTCTCTGGTCTGGTCGACGAACACATCGGACAGCCGTGTTGTCGGTCTGAATCTTGCTGAAACTGGGAATATGGTTCTCTTCGACGCAATGGGGAAGACGGTGTGGGAATCATTTGAGCACCCAACTGACACGCTCCTTCTTGGGCAGTCACTGAGGCAAGGGAAGAGACTTACTTCAGATTCCTTGGCAACAAACTGGACTCAAGGTCAGTTCTATCTCACTGTACTTGACAATGGTTTGTATGCTTTCATCGAAGCAGATCCACCACAGCTCTATTATCAAAGAAGATTCAATATCACTGATGCCATAGTTCAGCCAAATATGAACATATCCTCTGATGGAGCAAAGAACTACACGACTTACATTTCCTTCTTAAAAGGTAGCCTGTCAGCATTTGTTAGCTTCAACAATACTGATATCAATCTATTCGATATATCACTGCCGTCGCCATCTTCAGCACAGTTCATGAGCCTCGAGAATGATGGGCACTTGAGAGTTTATAGATGGGATGGTACTTCGTGGAAACCTCAGGCTGATGTTCTGCATGTGGATCTTGATGATTGTGCATATCCCACAGTATGTGGAGATTATGGTATCTGTTCCGAAGGACAATGCAGTTGCCCGAGTCGGAATTCTGGGGATGAAGATCAATTTTTCCGCCAATTGGACAACCGGCAACCTAACATGGGCTGCTCCCTAGCAATTCCTCTGTCTTGTGACTTGACCCAATATCAACAGCTTCTCCCCCTCCCAAATGTCATGTACTTCAATTTAGGACAAAATTGGACCACCGACGAATATAGCTGCAAGGAGGCTTGCTTGAAGGCCTGTTCATGCAAAGCAGCCTTTTTCAAGTATAACAATGTCTCTAATGGTTCTTGCTACCTAATGCCAAAGCTTTTCTCACTCATGAATTATCAGCCTGAAGTAGTTGGATACAATTTATCTGCATACATCAAGGTGCAAATGTTACCTCCACCACCAAGAAGCAAACAGTTAAATCCATTAGTTTACCATGTTGGTGCTCCTATTATAGTTGCAGTTATCTGCATAATTATTCTCATCATCAGAAGAATAATGAAAAGGAAGATGGATGATGACGACCCATTTAAAGGACTGGCTGGCATGCCAACATGGTTCTCCTACAAACAGCTGAGAGAGGCGACTAATAACTTTAGCAAAAAGCTGGGACAGGGAGGATTTGGGCCAGTGTATGAGGGAAAACTTGGAAATGTTAAAATTGCCGTCAAATGCTTGCGTGATATTGGCCATGGAAAAGAAGAATTCATGGCCGAAGTCATCACCATTGGAAGCATCCATCACATCAATCTTGTTAGATTGATAGGATACTGTTCTGACAAGTTTCACAGGCTCCTTGTTTACGAGCATATGACCAATGGGTCTCTAGACAAGTGGATCTTCAGAAAGAACCCAAGAGGTACACTCAGTTGGGCAACTCGATACAAGATTATACTGGATATTGCAAAAGGCTTGGCCTATCTTCATGAAGAATGCCGACAGAAGATTGCTCACCTTGATATCAAGCCTGGTAATATCCTCCTTGATGACAAGTTCAATGCAAAGATATCTGATTTCGGTCTAGCAAAGCTGATCGATAGGGATGAAAGCCATGTCATGACAAAAATCAGAGGAACAAGGGGATACCTAGCACCAGAATGGTTGTCATCAACAATTACCGAGAAGGCTGATATCTACAGTTTTGGTGTTGTTGTGCTGGAAATTGTGAGCGGAAGGAAAAACCTGGATAACAATCAGCCTGAAGCGAGCAACAACCTAATCAATCTACTTCAAGAGAAAATCAAGGTCGGCCAAGTTCTAGATATATTGGACAATCAGAACGAAGAAATCCAATTACACGGGGAAGAAATAATAGAAGTGATCAAGCTAGCAGTCTGGTGCTTGCAGCGCGACTGCAGCAAACGACCAGCCATGTCACAGGTTGTGAAGGTCCTGGAAGGCGCGATCGACACGGAAACATCCGCAGGCTACGATGCAGCTAGTAAAGATGATATTAATTTTGACGCTTCATCCCCTCTGTCCCCAGCACCAGTGTCAGCACGATGAAACTCTTTTTAAGTAGGAACACCGATACTTGTTACAGTTTAGTTGCAGTACTGTGTGCAGTGTGCTAGTGTGCATCTCATGTAAATTTGTCCCTTGTAATATGTAACATCCTCATCAATGTGTGAATGAATGAAATATTATAACGATTTTATT
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| CDS seq | ATGCCTTGGGCTGAAAGCTTGCTGTTCCTCCTCCTCTTGTTCTCGCTGCCCATTCCCTTCTCCCATTCTTGGTCCTTTGATTATCCCAGCCCCATTGCCAACATTAATTCTCTTTGGACGAACAACAATGCCACCATCCCATACAGTGCAACCTACCCAGATGGTTCAACGATCAGAGCGATTCTTGTTAGGCAGAATCCTACATGGTATAGTCCATTCTTCGCATGTGGTTTCATCTGCACCGCTCCTTGCAATGATTTTCTCTTTGCCATCTTCTCGGTGTCCGTTGGTGATCCGAGCAACCCTGCCTTCAATACCTCGTCCATGCCACGGATCATGTGGACAGCCAACAGGTCCCGTCCAGTGAAGGATAATGCGTCACTCCAGTTCAAGGATGGCAATCTCATACTGCGAGACTTCGATGGTTCTCTGGTCTGGTCGACGAACACATCGGACAGCCGTGTTGTCGGTCTGAATCTTGCTGAAACTGGGAATATGGTTCTCTTCGACGCAATGGGGAAGACGGTGTGGGAATCATTTGAGCACCCAACTGACACGCTCCTTCTTGGGCAGTCACTGAGGCAAGGGAAGAGACTTACTTCAGATTCCTTGGCAACAAACTGGACTCAAGGTCAGTTCTATCTCACTGTACTTGACAATGGTTTGTATGCTTTCATCGAAGCAGATCCACCACAGCTCTATTATCAAAGAAGATTCAATATCACTGATGCCATAGTTCAGCCAAATATGAACATATCCTCTGATGGAGCAAAGAACTACACGACTTACATTTCCTTCTTAAAAGGTAGCCTGTCAGCATTTGTTAGCTTCAACAATACTGATATCAATCTATTCGATATATCACTGCCGTCGCCATCTTCAGCACAGTTCATGAGCCTCGAGAATGATGGGCACTTGAGAGTTTATAGATGGGATGGTACTTCGTGGAAACCTCAGGCTGATGTTCTGCATGTGGATCTTGATGATTGTGCATATCCCACAGTATGTGGAGATTATGGTATCTGTTCCGAAGGACAATGCAGTTGCCCGAGTCGGAATTCTGGGGATGAAGATCAATTTTTCCGCCAATTGGACAACCGGCAACCTAACATGGGCTGCTCCCTAGCAATTCCTCTGTCTTGTGACTTGACCCAATATCAACAGCTTCTCCCCCTCCCAAATGTCATGTACTTCAATTTAGGACAAAATTGGACCACCGACGAATATAGCTGCAAGGAGGCTTGCTTGAAGGCCTGTTCATGCAAAGCAGCCTTTTTCAAGTATAACAATGTCTCTAATGGTTCTTGCTACCTAATGCCAAAGCTTTTCTCACTCATGAATTATCAGCCTGAAGTAGTTGGATACAATTTATCTGCATACATCAAGGGAGGATTTGGGCCAGTGTATGAGGGAAAACTTGGAAATGTTAAAATTGCCGTCAAATGCTTGCGTGATATTGGCCATGGAAAAGAAGAATTCATGGCCGAAGTCATCACCATTGGAAGCATCCATCACATCAATCTTGTTAGATTGATAGGATACTGTTCTGACAAGTTTCACAGGCTCCTTGTTTACGAGCATATGACCAATGGGTCTCTAGACAAGTGGATCTTCAGAAAGAACCCAAGAGGTACACTCAGTTGGGCAACTCGATACAAGATTATACTGGATATTGCAAAAGGCTTGGCCTATCTTCATGAAGAATGCCGACAGAAGATTGCTCACCTTGATATCAAGCCTGGTAATATCCTCCTTGATGACAAGTTCAATGCAAAGATATCTGATTTCGGTCTAGCAAAGCTGATCGATAGGGATGAAAGCCATAACGAAGAAATCCAATTACACGGGGAAGAAATAATAGAAGTGATCAAGCTAGCAGTCTGGTGCTTGCAGCGCGACTGCAGCAAACGACCAGCCATGTCACAGGTTGTGAAGGTCCTGGAAGGCGCGATCGACACGGAAACATCCGCAGGCTACGATGCAGCTAGTAAAGATGATATTAATTTTGACGCTTCATCCCCTCTGTCCCCAGCACCAGTGTCAGCACGATGA
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| Protein seq | MPWAESLLFLLLLFSLPIPFSHSWSFDYPSPIANINSLWTNNNATIPYSATYPDGSTIRAILVRQNPTWYSPFFACGFICTAPCNDFLFAIFSVSVGDPSNPAFNTSSMPRIMWTANRSRPVKDNASLQFKDGNLILRDFDGSLVWSTNTSDSRVVGLNLAETGNMVLFDAMGKTVWESFEHPTDTLLLGQSLRQGKRLTSDSLATNWTQGQFYLTVLDNGLYAFIEADPPQLYYQRRFNITDAIVQPNMNISSDGAKNYTTYISFLKGSLSAFVSFNNTDINLFDISLPSPSSAQFMSLENDGHLRVYRWDGTSWKPQADVLHVDLDDCAYPTVCGDYGICSEGQCSCPSRNSGDEDQFFRQLDNRQPNMGCSLAIPLSCDLTQYQQLLPLPNVMYFNLGQNWTTDEYSCKEACLKACSCKAAFFKYNNVSNGSCYLMPKLFSLMNYQPEVVGYNLSAYIKGGFGPVYEGKLGNVKIAVKCLRDIGHGKEEFMAEVITIGSIHHINLVRLIGYCSDKFHRLLVYEHMTNGSLDKWIFRKNPRGTLSWATRYKIILDIAKGLAYLHEECRQKIAHLDIKPGNILLDDKFNAKISDFGLAKLIDRDESHNEEIQLHGEEIIEVIKLAVWCLQRDCSKRPAMSQVVKVLEGAIDTETSAGYDAASKDDINFDASSPLSPAPVSAR |
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| Function | G-type lectin S-receptor-like serine/threonine-protein kinase SD2-5 [UniProtKB/Swiss-Prot:Q8RWZ5] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsIR64_02g0009710 | OsIR64_02g0009710.01 | Chr02 | 7606995 | 7609505 | + | NAM | ||
| CDS seq | ATGCCTTGGGCTGAAAGCTTGCTGTTCCTCCTCCTCTTGTTCTCGCTGCCCATTCCCTTCTCCCATTCTTGGTCCTTTGATTATCCCAGCCCCATTGCCAACATTAATTCTCTTTGGACGAACAACAATGCCACCATCCCATACAGTGCAACCTACCCAGATGGTTCAACGATCAGAGCGATTCTTGTTAGGCAGAATCCTACATGGTATAGTCCATTCTTCGCATGTGGTTTCATCTGCACCGCTCCTTGCAATGATTTTCTCTTTGCCATCTTCTCGGTGTCCGTTGGTGATCCGAGCAACCCTGCCTTCAATACCTCGTCCATGCCACGGATCATGTGGACAGCCAACAGGTCCCGTCCAGTGAAGGATAATGCGTCACTCCAGTTCAAGGATGGCAATCTCATACTGCGAGACTTCGATGGTTCTCTGGTCTGGTCGACGAACACATCGGACAGCCGTGTTGTCGGTCTGAATCTTGCTGAAACTGGGAATATGGTTCTCTTCGACGCAATGGGGAAGACGGTGTGGGAATCATTTGAGCACCCAACTGACACGCTCCTTCTTGGGCAGTCACTGAGGCAAGGGAAGAGACTTACTTCAGATTCCTTGGCAACAAACTGGACTCAAGGTCAGTTCTATCTCACTGTACTTGACAATGGTTTGTATGCTTTCATCGAAGCAGATCCACCACAGCTCTATTATCAAAGAAGATTCAATATCACTGATGCCATAGTTCAGCCAAATATGAACATATCCTCTGATGGAGCAAAGAACTACACGACTTACATTTCCTTCTTAAAAGGTAGCCTGTCAGCATTTGTTAGCTTCAACAATACTGATATCAATCTATTCGATATATCACTGCCGTCGCCATCTTCAGCACAGTTCATGAGCCTCGAGAATGATGGGCACTTGAGAGTTTATAGATGGGATGGTACTTCGTGGAAACCTCAGGCTGATGTTCTGCATGTGGATCTTGATGATTGTGCATATCCCACAGTATGTGGAGATTATGGTATCTGTTCCGAAGGACAATGCAGTTGCCCGAGTCGGAATTCTGGGGATGAAGATCAATTTTTCCGCCAATTGGACAACCGGCAACCTAACATGGGCTGCTCCCTAGCAATTCCTCTGTCTTGTGACTTGACCCAATATCAACAGCTTCTCCCCCTCCCAAATGTCATGTACTTCAATTTAGGACAAAATTGGACCACCGACGAATATAGCTGCAAGGAGGCTTGCTTGAAGGCCTGTTCATGCAAAGCAGCCTTTTTCAAGTATAACAATGTCTCTAATGGTTCTTGCTACCTAATGCCAAAGCTTTTCTCACTCATGAATTATCAGCCTGAAGTAGTTGGATACAATTTATCTGCATACATCAAGGGAGGATTTGGGCCAGTGTATGAGGGAAAACTTGGAAATGTTAAAATTGCCGTCAAATGCTTGCGTGATATTGGCCATGGAAAAGAAGAATTCATGGCCGAAGTCATCACCATTGGAAGCATCCATCACATCAATCTTGTTAGATTGATAGGATACTGTTCTGACAAGTTTCACAGGCTCCTTGTTTACGAGCATATGACCAATGGGTCTCTAGACAAGTGGATCTTCAGAAAGAACCCAAGAGGTACACTCAGTTGGGCAACTCGATACAAGATTATACTGGATATTGCAAAAGGCTTGGCCTATCTTCATGAAGAATGCCGACAGAAGATTGCTCACCTTGATATCAAGCCTGGTAATATCCTCCTTGATGACAAGTTCAATGCAAAGATATCTGATTTCGGTCTAGCAAAGCTGATCGATAGGGATGAAAGCCATAACGAAGAAATCCAATTACACGGGGAAGAAATAATAGAAGTGATCAAGCTAGCAGTCTGGTGCTTGCAGCGCGACTGCAGCAAACGACCAGCCATGTCACAGGTTGTGAAGGTCCTGGAAGGCGCGATCGACACGGAAACATCCGCAGGCTACGATGCAGCTAGTAAAGATGATATTAATTTTGACGCTTCATCCCCTCTGTCCCCAGCACCAGTGTCAGCACGATGA
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| Protein seq | MPWAESLLFLLLLFSLPIPFSHSWSFDYPSPIANINSLWTNNNATIPYSATYPDGSTIRAILVRQNPTWYSPFFACGFICTAPCNDFLFAIFSVSVGDPSNPAFNTSSMPRIMWTANRSRPVKDNASLQFKDGNLILRDFDGSLVWSTNTSDSRVVGLNLAETGNMVLFDAMGKTVWESFEHPTDTLLLGQSLRQGKRLTSDSLATNWTQGQFYLTVLDNGLYAFIEADPPQLYYQRRFNITDAIVQPNMNISSDGAKNYTTYISFLKGSLSAFVSFNNTDINLFDISLPSPSSAQFMSLENDGHLRVYRWDGTSWKPQADVLHVDLDDCAYPTVCGDYGICSEGQCSCPSRNSGDEDQFFRQLDNRQPNMGCSLAIPLSCDLTQYQQLLPLPNVMYFNLGQNWTTDEYSCKEACLKACSCKAAFFKYNNVSNGSCYLMPKLFSLMNYQPEVVGYNLSAYIKGGFGPVYEGKLGNVKIAVKCLRDIGHGKEEFMAEVITIGSIHHINLVRLIGYCSDKFHRLLVYEHMTNGSLDKWIFRKNPRGTLSWATRYKIILDIAKGLAYLHEECRQKIAHLDIKPGNILLDDKFNAKISDFGLAKLIDRDESHNEEIQLHGEEIIEVIKLAVWCLQRDCSKRPAMSQVVKVLEGAIDTETSAGYDAASKDDINFDASSPLSPAPVSAR
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsIR64_02g0009710 | OsIR64_02g0009710.02 | Chr02 | 7606922 | 7609658 | + | IsoSeq | ||
| CDS seq | CCTTTCGTCTCAAACAAAAGATCACATAATCTGTCCCCATCTCCCATCCAAGAAGAACTCACATACCAACCATGCCTTGGGCTGAAAGCTTGCTGTTCCTCCTCCTCTTGTTCTCGCTGCCCATTCCCTTCTCCCATTCTTGGTCCTTTGATTATCCCAGCCCCATTGCCAACATTAATTCTCTTTGGACGAACAACAATGCCACCATCCCATACAGTGCAACCTACCCAGATGGTTCAACGATCAGAGCGATTCTTGTTAGGCAGAATCCTACATGGTATAGTCCATTCTTCGCATGTGGTTTCATCTGCACCGCTCCTTGCAATGATTTTCTCTTTGCCATCTTCTCGGTGTCCGTTGGTGATCCGAGCAACCCTGCCTTCAATACCTCGTCCATGCCACGGATCATGTGGACAGCCAACAGGTCCCGTC
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| Protein seq | PFVSNKRSHNLSPSPIQEELTYQPCLGLKACCSSSSCSRCPFPSPILGPLIIPAPLPTLILFGRTTMPPSHTVQPTQMVQRSERFLLGRILHGIVHSSHVVSSAPLLAMIFSLPSSRCPLVIRATLPSIPRPCHGSCGQPTGPV |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.069999 | 0.680149 | 0.205017 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_02g0234450 | RBH | 0.291689 | 0.249279 | 0.950564 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os02g13965 | RBH | 0.131504 | 0.364412 | 0.244694 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os02g0234450 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_02g0010030 | RBH | 0.000000 | 11.037065 | 0.235852 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_02g0010110 | RBH | 0.000000 | 0.000000 | 0.063177 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_02g0009980 | RBH | 0.432521 | 16.830273 | 0.579263 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_02g0009810 | RBH | 0.173766 | 0.197173 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_02g0009940 | RBH | 2.550771 | 7.980859 | 2.383760 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_02G0126800 | RBH | 0.4619 | 0.461837 | 0.312598 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_06g0018760 | RBH | 0.181469 | 0.164169 | 0.162086 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_02G0130400 | RBH | 0.6931205 | 0.4176375 | 0.949431 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_02g0010210 | RBH | 0.177773 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_02g0009870 | RBH | 0.444152 | 0.000000 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_02g0010170 | RBH | 1.876332 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_02g0010190 | RBH | 0.327659 | 0.285217 | 0.360346 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_02g0009880 | RBH | 0.0 | 5.244425 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_02G010090 | RBH | 0.132505 | 1.569163 | 0.310449 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_02g0009900 | RBH | 0.311153 | 4.875041 | 1.261839 |
