Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsIR64_01g0039170 | OGI:01109280 | 16/16 | IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | Chr01:37899469-37904684 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | TGTTTTTCTTCTGTAAGATATAAGCTTTATCGTGCCAAAATGTAAATATTAACACAAGAAGAGATCCTATTAAAACTGGAGTTAAAAGAAAAAAAAAACAGAACGATAGATATGCATTGCCAAAAAAGCTTGCTAAAGGCGACACATTGGCCCTTCCAAGTCTCAATAATAAGAAATGTTCCAGACCATTTGTTTTCTTTCCCCCAATCTACTTTTCCTTTTCTTTTCCTGTACAATGGGAAACAATTCAGATCAGATAATCTTCGAGTTACAACCGAATGGATTGTCTTGAGACAGACATTGAGAATGGTTTGCCATTCAAATAAGTTTCACTGCAGAATGGATGTGTTCTAGCAAAGTGAACGGCTCACTTTATCCAAATATCTTCCAAGATCAGACTAATGACCACATGGAGAAATGACAAATCGATTGAGGTCACGAGTGTCTCCACATAGACAAAACAAGTGCACATGCAAAAAAGAATGTGGACAGGTAGCTGTCAGCCATTTCATGAAATGCTCTTCACATTCTGAGCATCCTGGGTCCTGGAGTAAAATAAAAGAGTTAGCAGAAGTCATCATCAATAGTACCAGAGAATACGCATATGTTTGAAGTGAATTGGTTATCCTACTCTCATAGAAATGACCAATGCGTAGCTCAATCATCAGCGCATTCAGATTATAACCATCTACAAAAATATATGTGGGCCATTCCAGGAAATGTAAACAATACCTCTGGGAAGTACTGGTGCTTTCAGATTGATCTTCATCCTCCTCTTCCTCTGTTTCATCTTCATCACTATCAATCTCCAAAAGATTTAATCTGCATTGGCTCAATACTCTTCTCATCAAGAAAACGTTCAAGTAATAACGCACCAACTCTATCCTGGTCTTTGAGGCAAGATGTTTTGATGCTACCGCCCAAAAAGTCTTATGGTCCATCACAGGGACCAACCTCTCAAGTGCATTAAACTTTAGTTGCTCCTCACGAGTCCACATTTTAGAAACCTCCTCACCCATTGAATCAAATCGCCATTCTGTGAAAGCTCTACCGAGTTCACACCTTAGCTGATCTCTGGCTGCATCTGTGTGATGCTGTCTGCAGAAGAAGGATCCCGGGTATGAACAGTTACATGATTCCATCCTTCCCTGGCCAGCTATTTTTTTATCAGTTTGTAGAACTTGACCTTCAGGTGGCCAAATTCTGGTTCCTAGCATCTTTGAGATGTTTGGGTCATTTTTGTAACGAGCAAGTTCATCTGAAGGTGGTTCAGTCCAGTCAGGTACCTCTGCCTGAAAATGCTCACCAACTCCAATCTTTTTCCTTTGTGTGAGGAGCACTGATGTCATGAGTTTCATTCTCTTAGCTAGCCTCTCTGATTTCCTTGTTGGCATATTCATCGAACCTTTACCTTTTTGTCTTTCTGCATGGTTATTGTGAGATCTGTACTTCCTTTTCTGCAAGATTGAAAACACAGGAAGCTCTAAAATAGTAAGAAAAGGAAATTGTTTTCCGCAGTATAATGCACAGTAGCAGCTGACATGAAAAATAAAAATAATCATAATCTGGCAAACAAACTGAAAAGTACTAAAGCAAAGTTATCAAACATCGACAAACTTCTGAGATAGGGGGGAAATTCCACAAACTTAACTCAGGGTTTTCGTAGTACTTAGAAGTAAAATTTGCCATGTAGATAGGAAACAATTGTTCACCACTTTTATTTGAACATTTCCAACTTATTTTACACGGAGTCCTCATGCCCTTATTAGATGAAACAAATGAAATAATCATGACTCAGTGGTATCCATGTTCACTGTGGAGTCTGAAATTGCAGTGATATGTTTACTGATAGAGAACACCAGGGGGGTAATGCTGCTGCATGATAGAAGACTACTGCTTGAGCATCTTTGACAAAAGAGCAAATCCTTGCAACGTCTCAGAGGTATACATGCATCCAATTTATGAAACTAGCATTGCCATTGCATACCACATAAGGTTTAGGCATGCAGAACACAAGATTCATAATAAAAGAATAAGAGTGAAGAGCCACTTTTCCTAAAGCAACACACCACCATATACATACCACCCAGAAAAGAAGTAATTCTGGTGAACAGGTAGTATCTCATCATAGCGTTTGATTTTCCGACTGATGGGATATCATGAATGCTTCGAACCATTTCTTTTTTGATGCAATCGCATTATATTCCTCAAATCGGTAAGAACTCCTACTAACAAGATTGCATACCACAGCAAAACTATGCCCTGGGTTTAGTCTATGTCATATGCTGTTATTTTCAAAGAATACATCAGCTTGCTCCTATGCACATTAAGTTATGCTTCGAAAGATAGTCAATTAAAATGACTCAATAGTTATAGACAAAACAGTTAAAATGAGTATTAAACATCAACTTAATCAAGTCACTATCAAGAAAACGGTTCGTCAGTCCTGGAATTATCTGGATAGCAAACAATTAGTGAGGATTTCCATGGCAAATATTTGTTTCTACCAATACTGCGTAAACATACTACCAATAAAACATTACCCAAAACATTCTCAATTCTTATATAACATTTCAAACTAATAAAAATCTCCTTCAGATATTTTATCTAACGATCAGTAATGAAGGCATGTGCACAAATGGGACTTCAAAATGAGCCCACTGGAGTGTTATTGGTAACATAACAAAAATCCAGAACCACAAGGATTTTAACAAGAAAATGACAATATTATACTTGAATTTCCAACAACAAAACCCATAGCTAATAAATTTAGGATCTGCCAAAGATTATTATCTATCACCCTTAAGTACCACTCTGCTTGTAGGCTGTTACACTGTCATTGGCATCTAGATAAATATCAGCCTCAAGCACAGGACATGTGTGTGAACTGCAGTTCCTGCTTCTCTCCACATATAAACACGCCATACTGGCACTTATCTGAGTTCCTTTACCACACTATGGCACCTGTGCTGGTCATATATGTTTTTTCAGCTTCAGACCAAAGCTTTTTCTGGGTCGAGGTTTCAGATCAATTCTGGAACGACTATAAAAATGATTCTTCTGGGACTAAATTATGAGGCTGTGACAGCCTTTTCACCAGCTCTACATGAAAATAGACAATGTGATAGTATATGTTACAACTCTAGGGTTCCAATTACCAGTATGATTATCCATGAAAGATATGAGTAGAGATCATTGATGGTTTTTATATATTCCATAATGTCAACACACTGCAACCACGATTTACACTATGCAACCATGTCCAGATTCCAGAAATATAGTTTTTATTTACAATAACAAAGAGGGGGATACAATTATTTTACATAAAGCAATCTCACATCAGTAATGTAATGAGGGTTTGTTAAAATTGGCTATACATGACACATATCATAAGCTGCTGCCAATGGATCTACAATCATGTCTGTCTATGTAAATACTTTTCTTATTGAACCCCCAATATGTAGACCTTTGTAAAAGGGTGTGTCAAGAAAGAAAATCTTGCTAATATAATTTTCTTGTTCTATGTCTGATCTAGCTTTCTCTTAATGTTTAGTGCAGTTTTCTACAGTATTACTCCTGGTGGCTCTAGTCAAGTGGGTAAAGTCCTTTGTCAAAAAGAGGAGAGGCTAGAGCGCCACTGATTTCATTAAAGAAGAGAAGGAAGTCTCAGAATGTGGTAACTTTATCGCAACACAAGAGAAGGCTCTACCAAAAAATTGAAACAAAAGAAACTAACTAAACAAAGAAAAAGAAATTTAAAACACCGCTTATCACTGCCAGTAAAATCATACTGTTACTCCATATGTAGACTGGATTTATACAGATCCAATGACCAACGTCATTGGCATCTTAACTAAGAGTCATTCCAATTTGTCCGCGATGTTTCATGTTTTACCTCAACATAATTTGCAGATATGTTTAGTGATCAATTATTTCACAAATACAATGTTGACTAAGAAGCTTTCTATGCCGTGCATTGAGCAAATAGACATCGGTCATGTAGCAGAATGTTTTCCGTTGTTAGACTTGAAGGTATAAAAACAAAGGTCCTATCGGTCATCCAGGAAAAACAGTGTCTGATGGAACCATCATGGTTCATGAATGCAGGCAACAGTTTTCTAACTGGTACTGCATTATGTGACACCGTCATGTGGAAATATATTGTAGTAGGTCACACTGTGCCTAATTTCCACAACATGCAGTTCCAATAAAAGCTCCCTTCAATTAGAAGATCTCGCTGAGATAATCGCATGTTTTAAGTCAGGATTCCCCTTCCGGATTAGAATCTTCTATTGTTAGTAAAAGTAAACAGTACATGTGTGTTTATGCAGGCTGTGATTTTATTCTATTGTAATGCCAGTGACAGATTCTATGAACAGGGCAGGACCGGTCAATTGTCAACACGCGGCCCTTGCGAGGCTGCGACTCCAGAGTCCAGACACAAAAGCACATCCAGAAAGCCAAACCTAATGGTACGAAAGGGAACAACACAAAGTGACAAAATCCTAGATGCAGCAGCAAACACCAACGGGCGCGTATCAAGCAAGAGGCCAGACGCGCAACATATGGGCAACAGATCGGAAATTGAGTAAAGGAGCTCACCTTGAAGAAGCTGGGTAGCTCGTCCGCGTTCGCAACGTCCTCCATCCTGAGGTAGCGAGCGCGCCGTAAGGCCAGCACCTGCCGCTTCCTCGCCTTGACCTCCGCCGGAACAGGCCGCGCCGCCACGGGATTCGCGGCGACCTCCCGCGTCCACCGCAGCAACTCCCCCAGATCCCCAACCCCGCCGGGACCGCGGCCGACGCCGCCGCCGTTGGCACCTCCCTCGCCGCGGAGCGGGAGCAGGATCTCCCCCATGAACGCCTCGAACAGCCGCCGTGGCTCGCCGGCTCCATGCGCCTGCGCCAGCGGCGAGGCTGCAACGGCAGCTGACGAGGATGTGGAGGTGGAGGTGGAGGCGGAGGCGGGCGCGTGCCGTGGCTGGTCACTGCAGTAGCCGCCGCTCAGGGGGAAGGGGTCTTCGACGAGCTGCTGCTGGTACATCCCGACCATCGGGGCGAGGTCGCCGCGGCCGGCCGCGGCGGCGGCGGGTGTAGCAGCCGCCTCGCCGCGCGCCCCCAGCTTGCTGCTCCCGCCTGCGCCTGCGAGGATGGAGGCCGCGGTTTATTAGCTGTAACTCGTAAAATTTGGGATGGAATTATGGAATGTTCGAGGTT
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| CDS seq | ATGGTCGGGATGTACCAGCAGCAGCTCGTCGAAGACCCCTTCCCCCTGAGCGGCGGCTACTGCAGTGACCAGCCACGGCACGCGCCCGCCTCCGCCTCCACCTCCACCTCCACATCCTCGTCAGCTGCCGTTGCAGCCTCGCCGCTGGCGCAGGCGCATGGAGCCGGCGAGCCACGGCGGCTGTTCGAGGCGTTCATGGGGGAGATCCTGCTCCCGCTCCGCGGCGAGGGAGGTGCCAACGGCGGCGGCGTCGGCCGCGGTCCCGGCGGGGTTGGGGATCTGGGGGAGTTGCTGCGGTGGACGCGGGAGGTCGCCGCGAATCCCGTGGCGGCGCGGCCTGTTCCGGCGGAGGTCAAGGCGAGGAAGCGGCAGGTGCTGGCCTTACGGCGCGCTCGCTACCTCAGGATGGAGGACGTTGCGAACGCGGACGAGCTACCCAGCTTCTTCAAGAAAAGGAAGTACAGATCTCACAATAACCATGCAGAAAGACAAAAAGGTAAAGGTTCGATGAATATGCCAACAAGGAAATCAGAGAGGCTAGCTAAGAGAATGAAACTCATGACATCAGTGCTCCTCACACAAAGGAAAAAGATTGGAGTTGGTGAGCATTTTCAGGCAGAGGTACCTGACTGGACTGAACCACCTTCAGATGAACTTGCTCGTTACAAAAATGACCCAAACATCTCAAAGATGCTAGGAACCAGAATTTGGCCACCTGAAGGTCAAGTTCTACAAACTGATAAAAAAATAGCTGGCCAGGGAAGGATGGAATCATGTAACTGTTCATACCCGGGATCCTTCTTCTGCAGACAGCATCACACAGATGCAGCCAGAGATCAGCTAAGGTGTGAACTCGGTAGAGCTTTCACAGAATGGCGATTTGATTCAATGGGTGAGGAGGTTTCTAAAATGTGGACTCGTGAGGAGCAACTAAAGTTTAATGCACTTGAGAGGTTGGTCCCTGTGATGGACCATAAGACTTTTTGGGCGGTAGCATCAAAACATCTTGCCTCAAAGACCAGGATAGAGTTGGTGCGTTATTACTTGAACGTTTTCTTGATGAGAAGAGTATTGAGCCAATGCAGATTAAATCTTTTGGAGATTGATAGTGATGAAGATGAAACAGAGGAAGAGGAGGATGAAGATCAATCTGAAAGCACCAGTACTTCCCAGAGGACCCAGGATGCTCAGAATGTGAAGAGCATTTCATGA
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| Protein seq | MVGMYQQQLVEDPFPLSGGYCSDQPRHAPASASTSTSTSSSAAVAASPLAQAHGAGEPRRLFEAFMGEILLPLRGEGGANGGGVGRGPGGVGDLGELLRWTREVAANPVAARPVPAEVKARKRQVLALRRARYLRMEDVANADELPSFFKKRKYRSHNNHAERQKGKGSMNMPTRKSERLAKRMKLMTSVLLTQRKKIGVGEHFQAEVPDWTEPPSDELARYKNDPNISKMLGTRIWPPEGQVLQTDKKIAGQGRMESCNCSYPGSFFCRQHHTDAARDQLRCELGRAFTEWRFDSMGEEVSKMWTREEQLKFNALERLVPVMDHKTFWAVASKHLASKTRIELVRYYLNVFLMRRVLSQCRLNLLEIDSDEDETEEEEDEDQSESTSTSQRTQDAQNVKSIS |
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| Function | AT-rich interactive domain-containing protein 2 [UniProtKB/Swiss-Prot:Q9LDD4] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsIR64_01g0039170 | OsIR64_01g0039170.01 | Chr01 | 37899469 | 37904684 | - | NAM | ||
| CDS seq | ATGGTCGGGATGTACCAGCAGCAGCTCGTCGAAGACCCCTTCCCCCTGAGCGGCGGCTACTGCAGTGACCAGCCACGGCACGCGCCCGCCTCCGCCTCCACCTCCACCTCCACATCCTCGTCAGCTGCCGTTGCAGCCTCGCCGCTGGCGCAGGCGCATGGAGCCGGCGAGCCACGGCGGCTGTTCGAGGCGTTCATGGGGGAGATCCTGCTCCCGCTCCGCGGCGAGGGAGGTGCCAACGGCGGCGGCGTCGGCCGCGGTCCCGGCGGGGTTGGGGATCTGGGGGAGTTGCTGCGGTGGACGCGGGAGGTCGCCGCGAATCCCGTGGCGGCGCGGCCTGTTCCGGCGGAGGTCAAGGCGAGGAAGCGGCAGGTGCTGGCCTTACGGCGCGCTCGCTACCTCAGGATGGAGGACGTTGCGAACGCGGACGAGCTACCCAGCTTCTTCAAGAAAAGGAAGTACAGATCTCACAATAACCATGCAGAAAGACAAAAAGGTAAAGGTTCGATGAATATGCCAACAAGGAAATCAGAGAGGCTAGCTAAGAGAATGAAACTCATGACATCAGTGCTCCTCACACAAAGGAAAAAGATTGGAGTTGGTGAGCATTTTCAGGCAGAGGTACCTGACTGGACTGAACCACCTTCAGATGAACTTGCTCGTTACAAAAATGACCCAAACATCTCAAAGATGCTAGGAACCAGAATTTGGCCACCTGAAGGTCAAGTTCTACAAACTGATAAAAAAATAGCTGGCCAGGGAAGGATGGAATCATGTAACTGTTCATACCCGGGATCCTTCTTCTGCAGACAGCATCACACAGATGCAGCCAGAGATCAGCTAAGGTGTGAACTCGGTAGAGCTTTCACAGAATGGCGATTTGATTCAATGGGTGAGGAGGTTTCTAAAATGTGGACTCGTGAGGAGCAACTAAAGTTTAATGCACTTGAGAGGTTGGTCCCTGTGATGGACCATAAGACTTTTTGGGCGGTAGCATCAAAACATCTTGCCTCAAAGACCAGGATAGAGTTGGTGCGTTATTACTTGAACGTTTTCTTGATGAGAAGAGTATTGAGCCAATGCAGATTAAATCTTTTGGAGATTGATAGTGATGAAGATGAAACAGAGGAAGAGGAGGATGAAGATCAATCTGAAAGCACCAGTACTTCCCAGAGGACCCAGGATGCTCAGAATGTGAAGAGCATTTCATGA
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| Protein seq | MVGMYQQQLVEDPFPLSGGYCSDQPRHAPASASTSTSTSSSAAVAASPLAQAHGAGEPRRLFEAFMGEILLPLRGEGGANGGGVGRGPGGVGDLGELLRWTREVAANPVAARPVPAEVKARKRQVLALRRARYLRMEDVANADELPSFFKKRKYRSHNNHAERQKGKGSMNMPTRKSERLAKRMKLMTSVLLTQRKKIGVGEHFQAEVPDWTEPPSDELARYKNDPNISKMLGTRIWPPEGQVLQTDKKIAGQGRMESCNCSYPGSFFCRQHHTDAARDQLRCELGRAFTEWRFDSMGEEVSKMWTREEQLKFNALERLVPVMDHKTFWAVASKHLASKTRIELVRYYLNVFLMRRVLSQCRLNLLEIDSDEDETEEEEDEDQSESTSTSQRTQDAQNVKSIS
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.102203 | 0.477837 | 1.453364 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0852500 | RBH | 1.079138 | 1.600661 | 2.756494 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g63354 | RBH | 0.684479 | 1.009764 | 0.715879 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0852500 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0040550 | RBH | 0.619149 | 7.122203 | 6.437382 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0040030 | RBH | 0.208769 | 0.000000 | 2.417639 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0040430 | RBH | 1.410922 | 6.774677 | 5.467491 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0039900 | RBH | 0.076599 | 0.501176 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0039490 | RBH | 2.683543 | 7.171784 | 12.314040 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0605600 | RBH | 6.0207455 | 19.578375 | 19.9035625 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0604300 | RBH | 7.2780445 | 20.5019155 | 18.851963 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0039530 | RBH | 0.316161 | 0.196931 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0039470 | RBH | 0.294638 | 2.450812 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0039710 | RBH | 3.758888 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0039680 | RBH | 0.581426 | 0.641925 | 0.740845 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0039570 | RBH | 0.510134 | 2.633549 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G040020 | RBH | 0.283351 | 2.765814 | 2.457576 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0039700 | RBH | 1.001501 | 7.287332 | 7.191329 |
