Basic Info |
Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
OsIR64_01g0037440 | OGI:01105790 | 16/16 | IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | Chr01:36611528-36612196 | ||||||||
Gene Symbol | - | ||||||||||
DNA seq | TCAAACCCCAGATCCGGGCGCCCCGAGGAAGGAGAGCAGCCTGCTGGTAGTGTTGCCATTGGAGCCAACGCTCGGGTCGTCAAGGAAGAGGTCCTCAGGCACGCGGAATGCGCCGTGCACGGCAACGATCGCGCCGCCGACGAGCAGCCCGGAGATGATGAGCGACGCCACGGAGGTCATGAAGAAGGCCAGCACGGACGCGACGACGAGGCCGAGCAGCGTCTCGCGGTCGGTGAAGGTGCGGCCGAAGAGAACGACGGGCTGGTCGGAGGCTCGGAAGACGTAGAGGAAGCACCAGCCGCCGAGGATGGCGAGGAGGACGAGGAGGGAGAAGGGGTGCGCCAGCAGCGAGGCCGCGAGGGAGAACGCCACCAAGGCGGCGTAGTTGACGCGGAAGTAGGCGAGGTTGCGGCGCAGCCGCGAGGTGGCCTCGGAGAGCGAGTCCGGCTTGGAGATGGCCGACCGGTCGACCAGCTCCGTCCAGGGCCGTCGGTCGGCGAGCGAGCGCCGCGCCGTGTCGGAGAACCTACTCACGAAGAGCCGGAACGCCGGCGTGGCGAGCGGCGCGTCGGTGAGCGCCGAGCCGGAGGACGGCGCGGAGCCACCGGCGGCCGCGGGGTTGGTCACGGGGAGCAACGGCTGCGGCGTCGGTGCGGCGGCGGAGGCCAT
More
|
||||||||||
CDS seq | ATGGCCTCCGCCGCCGCACCGACGCCGCAGCCGTTGCTCCCCGTGACCAACCCCGCGGCCGCCGGTGGCTCCGCGCCGTCCTCCGGCTCGGCGCTCACCGACGCGCCGCTCGCCACGCCGGCGTTCCGGCTCTTCGTGAGTAGGTTCTCCGACACGGCGCGGCGCTCGCTCGCCGACCGACGGCCCTGGACGGAGCTGGTCGACCGGTCGGCCATCTCCAAGCCGGACTCGCTCTCCGAGGCCACCTCGCGGCTGCGCCGCAACCTCGCCTACTTCCGCGTCAACTACGCCGCCTTGGTGGCGTTCTCCCTCGCGGCCTCGCTGCTGGCGCACCCCTTCTCCCTCCTCGTCCTCCTCGCCATCCTCGGCGGCTGGTGCTTCCTCTACGTCTTCCGAGCCTCCGACCAGCCCGTCGTTCTCTTCGGCCGCACCTTCACCGACCGCGAGACGCTGCTCGGCCTCGTCGTCGCGTCCGTGCTGGCCTTCTTCATGACCTCCGTGGCGTCGCTCATCATCTCCGGGCTGCTCGTCGGCGGCGCGATCGTTGCCGTGCACGGCGCATTCCGCGTGCCTGAGGACCTCTTCCTTGACGACCCGAGCGTTGGCTCCAATGGCAACACTACCAGCAGGCTGCTCTCCTTCCTCGGGGCGCCCGGATCTGGGGTTTGA
More
|
||||||||||
Protein seq | MASAAAPTPQPLLPVTNPAAAGGSAPSSGSALTDAPLATPAFRLFVSRFSDTARRSLADRRPWTELVDRSAISKPDSLSEATSRLRRNLAYFRVNYAALVAFSLAASLLAHPFSLLVLLAILGGWCFLYVFRASDQPVVLFGRTFTDRETLLGLVVASVLAFFMTSVASLIISGLLVGGAIVAVHGAFRVPEDLFLDDPSVGSNGNTTSRLLSFLGAPGSGV |
||||||||||
Function | PRA1 family protein B4 [UniProtKB/Swiss-Prot:O80915] |
Transcripts
Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
OsIR64_01g0037440 | OsIR64_01g0037440.01 | Chr01 | 36611528 | 36612196 | - | NAM | ||
CDS seq | ATGGCCTCCGCCGCCGCACCGACGCCGCAGCCGTTGCTCCCCGTGACCAACCCCGCGGCCGCCGGTGGCTCCGCGCCGTCCTCCGGCTCGGCGCTCACCGACGCGCCGCTCGCCACGCCGGCGTTCCGGCTCTTCGTGAGTAGGTTCTCCGACACGGCGCGGCGCTCGCTCGCCGACCGACGGCCCTGGACGGAGCTGGTCGACCGGTCGGCCATCTCCAAGCCGGACTCGCTCTCCGAGGCCACCTCGCGGCTGCGCCGCAACCTCGCCTACTTCCGCGTCAACTACGCCGCCTTGGTGGCGTTCTCCCTCGCGGCCTCGCTGCTGGCGCACCCCTTCTCCCTCCTCGTCCTCCTCGCCATCCTCGGCGGCTGGTGCTTCCTCTACGTCTTCCGAGCCTCCGACCAGCCCGTCGTTCTCTTCGGCCGCACCTTCACCGACCGCGAGACGCTGCTCGGCCTCGTCGTCGCGTCCGTGCTGGCCTTCTTCATGACCTCCGTGGCGTCGCTCATCATCTCCGGGCTGCTCGTCGGCGGCGCGATCGTTGCCGTGCACGGCGCATTCCGCGTGCCTGAGGACCTCTTCCTTGACGACCCGAGCGTTGGCTCCAATGGCAACACTACCAGCAGGCTGCTCTCCTTCCTCGGGGCGCCCGGATCTGGGGTTTGA
More
|
|||||||
Protein seq | MASAAAPTPQPLLPVTNPAAAGGSAPSSGSALTDAPLATPAFRLFVSRFSDTARRSLADRRPWTELVDRSAISKPDSLSEATSRLRRNLAYFRVNYAALVAFSLAASLLAHPFSLLVLLAILGGWCFLYVFRASDQPVVLFGRTFTDRETLLGLVVASVLAFFMTSVASLIISGLLVGGAIVAVHGAFRVPEDLFLDDPSVGSNGNTTSRLLSFLGAPGSGV
More
|
Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
Leaf | Root | Panicle | |
FPKM | 0.0 | 0.359636 | 0.184223 |
Homologues
Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
---|---|---|---|---|---|
Leaf | Root | Panicle | |||
Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0827400 | RBH | 0.482808 | 0.0 | 0.753430 |
Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g61170 | RBH | 0.149036 | 0.0 | 0.268074 |
Nipponbare | IRGSP 1.0 | RAP-db | Os01g0827400 | RBH | None | None | None |
Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0038760 | RBH | 0.160736 | 2.227620 | 0.538377 |
KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0038250 | RBH | 0.160234 | 3.257548 | 2.428679 |
CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0038670 | RBH | 2.422177 | 3.332529 | 2.130111 |
ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0038140 | RBH | 0.139777 | 0.157657 | None |
PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0037740 | RBH | 0.927469 | 19.620834 | 1.309641 |
Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0585200 | RBH | 5.0610545 | 13.992395 | 4.793263 |
IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_05g0020150 | RBH | 0.260562 | 1.447462 | 0.826083 |
Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0581800 | RBH | 5.5453875 | 11.1866265 | 14.597203 |
LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0037670 | RBH | 0.100050 | 0.179824 | None |
KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0037700 | RBH | 0.237437 | 7.356788 | None |
GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0037930 | RBH | 0.0 | 0.0 | None |
LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0037950 | RBH | 0.0 | 0.356842 | 0.172055 |
LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0037780 | RBH | 0.0 | 2.354149 | None |
N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G038290 | RBH | 0.0 | 3.782336 | 4.072456 |
NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0037970 | RBH | 0.432817 | 0.0 | 1.705508 |