Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsIR64_01g0035600 | OGI:01101530 | 16/16 | IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | Chr01:35098253-35099699 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | GAAGAACCAACCGGTCGCCTCCCCTCACCTGCCCAGCTGCCCTTGCCCCGCACAAATTCCAAACCGAGCTCACCAGCGCCGGCGCCGGCGCCGGCACCGCGGCACGCCGTGCCCTTGCTCCCCAATGTCCCATCTCCAGCACCTCGCCGCCGGCGAACTCGTCACCGCACTCCGCGGAGCCTCCTGCCCTTCATCAGCCCTCCGTCTCTACTCCCTCATCCGCATCCACGCCCGCCCCTCCGATCCCGCCCTTTTCGCCTGGCGCCCCGCCGTCCTCGCGCTCAAGCCCCTCTCGGCAGCCGCCTCCCTCCCTCTCCTCTCCCACTTCCACGCCCACCTCATCAGGTCCAACCTCCTCGCCTACCCTCACGTCGCCTCCTCCCTCCTACGCGGTTACTCACTCCTCTCACCCGAACACGCCCACCACCTGTTCGATCAAATACCATCCTCCACCTGCAACCTGGTCGTCGTCAACGTCATGCTCGGGTCCCTCTGCCGATCCTCCGATCTAGCTTCCGCGCGAGCCTTCTTTGATGGCATCCCTGACAAGGACGTGGTTTCTTGGTCAACCATGCTTGCCTGTTATTTCTCCCACAGTCGCGTAGCCGAAGGCCTTGCTTTCTTCCGCACAATGACATTTACCACTCAGCTTGCTGCAAATTATGTGATGCTCGTCACCGTTCTCACGGGTTGTGCATCAGCTGGCTTGCTGCCAGTGTCCTGCAGGGCCATTCATGGATATATTGTCCGGCGCGGAATCACCTTCACCATGCACCTTGGCACGGCTTTGATTGATTGCTATGCCAAGGCTGGCCGCCTTGATTATGCATCCCGTGTGTTTTGCCGAGTCCCTTTGAGGAATGTGATGCACTGGACCGCAATGATTTGTGGGTCGGCAGCGCATCTTGGCAGCGAAAAGGCCATCCAGCTGTTTGAGGAGATGTGTCGGAGTGGAGTGCAACCAAATGAGATGACATTCACAGCTGTTCTCAGTGCATGCGGGCAAGCTGGACTGGTGGATCAAGGGAGGAGGTTCTTTAAACTTATGGTTGACACATATGGCTTTGAGCCGACTATACATCACTATGGCTGCATTGTTGATCTCTATGCAAAGGCTGGGAAACTGGAGGATGCTTATGAGGTTATCAAGACCATGAGAATGGAGCCAAATATCATCATTTGGACTTCATTGTTAGCAGCATGCAAGAAGTTCAAAAATTTTTACATTGCAGTGGAGGGAATAGAGAAAGTCTTGTCAATGGAGATATCAGAAGAAAATGGTGGATTATATGCACTGATTTCTGACCTTTATGCTATGGGTGGACAGTGGGAAGATGTGCTAAGGGTTAGGAGTTTGATGGAGGAACGTAATGTGTGGAAGATCAGAGGGTCAAGCTCCATCAAGGTGGGCGAACCCCAGGACTTTACTTTTCCTGCAGTCAGTTGA
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| CDS seq | ATGTCCCATCTCCAGCACCTCGCCGCCGGCGAACTCGTCACCGCACTCCGCGGAGCCTCCTGCCCTTCATCAGCCCTCCGTCTCTACTCCCTCATCCGCATCCACGCCCGCCCCTCCGATCCCGCCCTTTTCGCCTGGCGCCCCGCCGTCCTCGCGCTCAAGCCCCTCTCGGCAGCCGCCTCCCTCCCTCTCCTCTCCCACTTCCACGCCCACCTCATCAGGTCCAACCTCCTCGCCTACCCTCACGTCGCCTCCTCCCTCCTACGCGGTTACTCACTCCTCTCACCCGAACACGCCCACCACCTGTTCGATCAAATACCATCCTCCACCTGCAACCTGGTCGTCGTCAACGTCATGCTCGGGTCCCTCTGCCGATCCTCCGATCTAGCTTCCGCGCGAGCCTTCTTTGATGGCATCCCTGACAAGGACGTGGTTTCTTGGTCAACCATGCTTGCCTGTTATTTCTCCCACAGTCGCGTAGCCGAAGGCCTTGCTTTCTTCCGCACAATGACATTTACCACTCAGCTTGCTGCAAATTATGTGATGCTCGTCACCGTTCTCACGGGTTGTGCATCAGCTGGCTTGCTGCCAGTGTCCTGCAGGGCCATTCATGGATATATTGTCCGGCGCGGAATCACCTTCACCATGCACCTTGGCACGGCTTTGATTGATTGCTATGCCAAGGCTGGCCGCCTTGATTATGCATCCCGTGTGTTTTGCCGAGTCCCTTTGAGGAATGTGATGCACTGGACCGCAATGATTTGTGGGTCGGCAGCGCATCTTGGCAGCGAAAAGGCCATCCAGCTGTTTGAGGAGATGTGTCGGAGTGGAGTGCAACCAAATGAGATGACATTCACAGCTGTTCTCAGTGCATGCGGGCAAGCTGGACTGGTGGATCAAGGGAGGAGGTTCTTTAAACTTATGGTTGACACATATGGCTTTGAGCCGACTATACATCACTATGGCTGCATTGTTGATCTCTATGCAAAGGCTGGGAAACTGGAGGATGCTTATGAGGTTATCAAGACCATGAGAATGGAGCCAAATATCATCATTTGGACTTCATTGTTAGCAGCATGCAAGAAGTTCAAAAATTTTTACATTGCAGTGGAGGGAATAGAGAAAGTCTTGTCAATGGAGATATCAGAAGAAAATGGTGGATTATATGCACTGATTTCTGACCTTTATGCTATGGGTGGACAGTGGGAAGATGTGCTAAGGGTTAGGAGTTTGATGGAGGAACGTAATGTGTGGAAGATCAGAGGGTCAAGCTCCATCAAGGTGGGCGAACCCCAGGACTTTACTTTTCCTGCAGTCAGTTGA
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| Protein seq | MSHLQHLAAGELVTALRGASCPSSALRLYSLIRIHARPSDPALFAWRPAVLALKPLSAAASLPLLSHFHAHLIRSNLLAYPHVASSLLRGYSLLSPEHAHHLFDQIPSSTCNLVVVNVMLGSLCRSSDLASARAFFDGIPDKDVVSWSTMLACYFSHSRVAEGLAFFRTMTFTTQLAANYVMLVTVLTGCASAGLLPVSCRAIHGYIVRRGITFTMHLGTALIDCYAKAGRLDYASRVFCRVPLRNVMHWTAMICGSAAHLGSEKAIQLFEEMCRSGVQPNEMTFTAVLSACGQAGLVDQGRRFFKLMVDTYGFEPTIHHYGCIVDLYAKAGKLEDAYEVIKTMRMEPNIIIWTSLLAACKKFKNFYIAVEGIEKVLSMEISEENGGLYALISDLYAMGGQWEDVLRVRSLMEERNVWKIRGSSSIKVGEPQDFTFPAVS |
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| Function | Pentatricopeptide repeat-containing protein At1g33350 [UniProtKB/Swiss-Prot:Q9C501] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsIR64_01g0035600 | OsIR64_01g0035600.01 | Chr01 | 35098253 | 35099699 | + | NAM | ||
| CDS seq | ATGTCCCATCTCCAGCACCTCGCCGCCGGCGAACTCGTCACCGCACTCCGCGGAGCCTCCTGCCCTTCATCAGCCCTCCGTCTCTACTCCCTCATCCGCATCCACGCCCGCCCCTCCGATCCCGCCCTTTTCGCCTGGCGCCCCGCCGTCCTCGCGCTCAAGCCCCTCTCGGCAGCCGCCTCCCTCCCTCTCCTCTCCCACTTCCACGCCCACCTCATCAGGTCCAACCTCCTCGCCTACCCTCACGTCGCCTCCTCCCTCCTACGCGGTTACTCACTCCTCTCACCCGAACACGCCCACCACCTGTTCGATCAAATACCATCCTCCACCTGCAACCTGGTCGTCGTCAACGTCATGCTCGGGTCCCTCTGCCGATCCTCCGATCTAGCTTCCGCGCGAGCCTTCTTTGATGGCATCCCTGACAAGGACGTGGTTTCTTGGTCAACCATGCTTGCCTGTTATTTCTCCCACAGTCGCGTAGCCGAAGGCCTTGCTTTCTTCCGCACAATGACATTTACCACTCAGCTTGCTGCAAATTATGTGATGCTCGTCACCGTTCTCACGGGTTGTGCATCAGCTGGCTTGCTGCCAGTGTCCTGCAGGGCCATTCATGGATATATTGTCCGGCGCGGAATCACCTTCACCATGCACCTTGGCACGGCTTTGATTGATTGCTATGCCAAGGCTGGCCGCCTTGATTATGCATCCCGTGTGTTTTGCCGAGTCCCTTTGAGGAATGTGATGCACTGGACCGCAATGATTTGTGGGTCGGCAGCGCATCTTGGCAGCGAAAAGGCCATCCAGCTGTTTGAGGAGATGTGTCGGAGTGGAGTGCAACCAAATGAGATGACATTCACAGCTGTTCTCAGTGCATGCGGGCAAGCTGGACTGGTGGATCAAGGGAGGAGGTTCTTTAAACTTATGGTTGACACATATGGCTTTGAGCCGACTATACATCACTATGGCTGCATTGTTGATCTCTATGCAAAGGCTGGGAAACTGGAGGATGCTTATGAGGTTATCAAGACCATGAGAATGGAGCCAAATATCATCATTTGGACTTCATTGTTAGCAGCATGCAAGAAGTTCAAAAATTTTTACATTGCAGTGGAGGGAATAGAGAAAGTCTTGTCAATGGAGATATCAGAAGAAAATGGTGGATTATATGCACTGATTTCTGACCTTTATGCTATGGGTGGACAGTGGGAAGATGTGCTAAGGGTTAGGAGTTTGATGGAGGAACGTAATGTGTGGAAGATCAGAGGGTCAAGCTCCATCAAGGTGGGCGAACCCCAGGACTTTACTTTTCCTGCAGTCAGTTGA
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| Protein seq | MSHLQHLAAGELVTALRGASCPSSALRLYSLIRIHARPSDPALFAWRPAVLALKPLSAAASLPLLSHFHAHLIRSNLLAYPHVASSLLRGYSLLSPEHAHHLFDQIPSSTCNLVVVNVMLGSLCRSSDLASARAFFDGIPDKDVVSWSTMLACYFSHSRVAEGLAFFRTMTFTTQLAANYVMLVTVLTGCASAGLLPVSCRAIHGYIVRRGITFTMHLGTALIDCYAKAGRLDYASRVFCRVPLRNVMHWTAMICGSAAHLGSEKAIQLFEEMCRSGVQPNEMTFTAVLSACGQAGLVDQGRRFFKLMVDTYGFEPTIHHYGCIVDLYAKAGKLEDAYEVIKTMRMEPNIIIWTSLLAACKKFKNFYIAVEGIEKVLSMEISEENGGLYALISDLYAMGGQWEDVLRVRSLMEERNVWKIRGSSSIKVGEPQDFTFPAVS
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.033433 | 0.308870 | 0.146796 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0800400 | SBH | 0.186143 | 0.118046 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g58630 | SBH | 0.126316 | 0.077353 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0800400 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0036970 | SBH | 0.032605 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0036470 | SBH | 0.0 | 0.0 | 0.220485 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0036860 | SBH | 0.0 | 0.0 | 0.903011 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0036250 | SBH | 0.098567 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0035870 | RBH | 0.900722 | 3.547965 | 2.626393 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0558800 | SBH | 0.7245565 | 1.446257 | 0.783156 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_05g0016940 | SBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0557300 | SBH | 0.5343675 | 1.079452 | 2.178238 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0036290 | SBH | 0.030125 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0035800 | RBH | 0.041531 | 3.093673 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0036580 | SBH | 0.0 | 6.873058 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0036100 | RBH | 0.0 | 0.110351 | 0.394575 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0036450 | SBH | 0.0 | 0.524064 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G036380 | SBH | 0.162527 | 0.614671 | 0.122614 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0036650 | SBH | 0.303288 | 2.874941 | 1.166266 |
