Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsIR64_01g0030120 | OGI:01089740 | 16/16 | IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | Chr01:30987121-30988867 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ATGGACGGGCGCAATCATATGCAAATGCAACCACTGATCAATGAAAGGAGCAGATGTTCAACGCATGGCTGCCGTCGATCAAACTCAGTTCCAATAATTGAGTTGTATCTCGTACGTATAGCAATTTCCATGGAACGGGCCACTCCCACGCGGGCCATGGTTCGTAGTCGCGTTCGGCCTCGTCAGCCCGCGCGCGGCGAATGCTCGAAACGGGAAGTCCTCTCGTCAGAGTAGCTCACAAGCCGTAGGCCGTAGCGTGTCAAACCAAATGCGACCGCTCCGCGACCCGGCGAAGCTGGCAGCGGCGGCCTCCTCGCAGCGGCACCTCCGCGAGATCCACGCGCACCTCCTCGTCTCGGGCCGCATCGCGTCCCCGTCCCACCTGGCCGCTTTCCTCGCCTCCCTCGCCTCCTCCTCCTCCGACGACGACGACGATGGCGACCTCTCCTACGCGCGCCTCCTCCTGCCGCGGCGCCCCGCCACGCTCCTCGCGCACAACTCCCTCCTCCGCGCCCTCGCTCGCGGCCGGCGCCCGCACCTCGCCTTCGGCGCGTTCCGCGACCTGCCGCTCGTGCCCGACAACTACTCCTTCACCTTCCTCGTCCGCGCCGCGACCGCCCTGGCCGCCGCCGCGGCGTCCGCGCTGGACGCGGCCCTGATCGCGGGGAGCGTGCACGCGTCGGCGCTCCGCCACGGACACGCGGGCGACCCGCACGTGCAGAGCGGGGCCGTCTCCATGTACGCCGCGGCCGGGGATGTGGGTGCCGCGCGGGCCGCGTTCGCGGAGATCGCGAGCCCGGACGTGGTGTGCGTCACCGCGATGGTGGGGGCTCTCGCCACTGGCGGCGAAGCGGACGCTGCGCGCGAGCTGTTTGACGGAATGCCTCAGAGGGACCATGTCGCGTGGAACGCCATGATCGCCGGGTATGTGCACACGGGCCGGTCAAGGGAGGCCTTGAGGCTGTTCGACGAAATGCGTCATGCTGGCGCTGCCGTGGGGGAGGTGACGCTGGTGTCAGCGCTCACTGCCTGTGCGCAATTGGGCGCGCTGGAACGAGGCAAGTGGGTGCACTCGTGTGCACATAGCCGTGGGATGCGGCTGTCGGTCACGCTCGGCACCGCGTTGATTGATATGTATTCCAAGTGTGGCGCGGTGGCGGCAGCCATGGAGGTGTTTGACAGCATGGGCGAAAGGAACGTTTACACTTGGACCAGTGCAGTGAGTGGCCTTGCGATGAATGGCATGGGGAGAGACTGCCTTGCGCTGTTCAAGCGCATGGAGAGCACAGGGGTTGAGCCTAACGGTGTCACCTTTGTCGTGGTCCTCCGTGGATGCTCCATGGCTGGGTTGGTAGATGAGGGACGAGCATGCTTCGATTCGATGAAGAGCAATCATGGAATTGATCCTTGGCTTGAACACTACGGTTGCATGGTTGATTTGTATGGTCGAGCTGGGCGTCTGGATGATGCCGTGAACTTCATCAATGGCATGCCATTGGAGCCACACGAAGGCGTGTGGGGAGCACTACTCAATGCGTCACGGATCCACAAAAACGTTGAACTGGGGAAATATGCAATGGATAAGCTCATGGCGATCGAGTCCAAGAATGATGCCGCCCATGTCCTGCTCTCTAACATCTATGCAGACTCGCAGAACTGGAAGGGTGTCAGCAATGTTCGGAACATGATGAAGGCCAAGGGAGTGAAAAAGGTGCCTGGGTGTAGTGCCATTGAGGTTGGTGGCAAG
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| CDS seq | ATGGACGGGCGCAATCATATGCAAATGCAACCACTGATCAATGAAAGGAGCAGATGTTCAACGCATGGCTGCCGTCGATCAAACTCAGTTCCAATAATTGAGTTGTATCTCCAATTTCCATGGAACGGGCCACTCCCACGCGGGCCATGGTTCGTAGTCGCGTTCGGCCTCGTCAGCCCGCGCGCGGCGAATGCTCGAAACGGGAAGTCCTCTCGTCAGAGTAGCTCACAAGCCGTAGGCCGTAGCGTGTCAAACCAAATGCGACCGCTCCGCGACCCGGCGAAGCTGGCAGCGGCGGCCTCCTCGCAGCGGCACCTCCGCGAGATCCACGCGCACCTCCTCGTCTCGGGCCGCATCGCGTCCCCGTCCCACCTGGCCGCTTTCCTCGCCTCCCTCGCCTCCTCCTCCTCCGACGACGACGACGATGGCGACCTCTCCTACGCGCGCCTCCTCCTGCCGCGGCGCCCCGCCACGCTCCTCGCGCACAACTCCCTCCTCCGCGCCCTCGCTCGCGGCCGGCGCCCGCACCTCGCCTTCGGCGCGTTCCGCGACCTGCCGCTCGTGCCCGACAACTACTCCTTCACCTTCCTCGTCCGCGCCGCGACCGCCCTGGCCGCCGCCGCGGCGTCCGCGCTGGACGCGGCCCTGATCGCGGGGAGCGTGCACGCGTCGGCGCTCCGCCACGGACACGCGGGCGACCCGCACGTGCAGAGCGGGGCCGTCTCCATGTACGCCGCGGCCGGGGATGTGGGTGCCGCGCGGGCCGCGTTCGCGGAGATCGCGAGCCCGGACGTGGTGTGCGTCACCGCGATGGTGGGGGCTCTCGCCACTGGCGGCGAAGCGGACGCTGCGCGCGAGCTGTTTGACGGAATGCCTCAGAGGGACCATGTCGCGTGGAACGCCATGATCGCCGGGTATGTGCACACGGGCCGGTCAAGGGAGGCCTTGAGGCTGTTCGACGAAATGCGTCATGCTGGCGCTGCCGTGGGGGAGGTGACGCTGGTGTCAGCGCTCACTGCCTGTGCGCAATTGGGCGCGCTGGAACGAGGCAAGTGGGTGCACTCGTGTGCACATAGCCGTGGGATGCGGCTGTCGGTCACGCTCGGCACCGCGTTGATTGATATGTATTCCAAGTGTGGCGCGGTGGCGGCAGCCATGGAGGTGTTTGACAGCATGGGCGAAAGGAACGTTTACACTTGGACCAGTGCAGTGAGTGGCCTTGCGATGAATGGCATGGGGAGAGACTGCCTTGCGCTGTTCAAGCGCATGGAGAGCACAGGGGTTGAGCCTAACGGTGTCACCTTTGTCGTGGTCCTCCGTGGATGCTCCATGGCTGGGTTGGTAGATGAGGGACGAGCATGCTTCGATTCGATGAAGAGCAATCATGGAATTGATCCTTGGCTTGAACACTACGGTTGCATGGTTGATTTGTATGGTCGAGCTGGGCGTCTGGATGATGCCGTGAACTTCATCAATGGCATGCCATTGGAGCCACACGAAGGCGTGTGGGGAGCACTACTCAATGCGTCACGGATCCACAAAAACGTTGAACTGGGGAAATATGCAATGGATAAGCTCATGGCGATCGAGTCCAAGAATGATGCCGCCCATGTCCTGCTCTCTAACATCTATGCAGACTCGCAGAACTGGAAGGGTGTCAGCAATGTTCGGAACATGATGAAGGCCAAGGGAGTGAAAAAGGTGCCTGGGTGTAGTGCCATTGAGGTTGGTGGCAAG
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| Protein seq | MDGRNHMQMQPLINERSRCSTHGCRRSNSVPIIELYLQFPWNGPLPRGPWFVVAFGLVSPRAANARNGKSSRQSSSQAVGRSVSNQMRPLRDPAKLAAAASSQRHLREIHAHLLVSGRIASPSHLAAFLASLASSSSDDDDDGDLSYARLLLPRRPATLLAHNSLLRALARGRRPHLAFGAFRDLPLVPDNYSFTFLVRAATALAAAAASALDAALIAGSVHASALRHGHAGDPHVQSGAVSMYAAAGDVGAARAAFAEIASPDVVCVTAMVGALATGGEADAARELFDGMPQRDHVAWNAMIAGYVHTGRSREALRLFDEMRHAGAAVGEVTLVSALTACAQLGALERGKWVHSCAHSRGMRLSVTLGTALIDMYSKCGAVAAAMEVFDSMGERNVYTWTSAVSGLAMNGMGRDCLALFKRMESTGVEPNGVTFVVVLRGCSMAGLVDEGRACFDSMKSNHGIDPWLEHYGCMVDLYGRAGRLDDAVNFINGMPLEPHEGVWGALLNASRIHKNVELGKYAMDKLMAIESKNDAAHVLLSNIYADSQNWKGVSNVRNMMKAKGVKKVPGCSAIEVGGK |
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| Function | Putative pentatricopeptide repeat-containing protein At5g40405 [UniProtKB/Swiss-Prot:Q9FND7] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsIR64_01g0030120 | OsIR64_01g0030120.01 | Chr01 | 30987121 | 30988867 | + | NAM | ||
| CDS seq | ATGGACGGGCGCAATCATATGCAAATGCAACCACTGATCAATGAAAGGAGCAGATGTTCAACGCATGGCTGCCGTCGATCAAACTCAGTTCCAATAATTGAGTTGTATCTCCAATTTCCATGGAACGGGCCACTCCCACGCGGGCCATGGTTCGTAGTCGCGTTCGGCCTCGTCAGCCCGCGCGCGGCGAATGCTCGAAACGGGAAGTCCTCTCGTCAGAGTAGCTCACAAGCCGTAGGCCGTAGCGTGTCAAACCAAATGCGACCGCTCCGCGACCCGGCGAAGCTGGCAGCGGCGGCCTCCTCGCAGCGGCACCTCCGCGAGATCCACGCGCACCTCCTCGTCTCGGGCCGCATCGCGTCCCCGTCCCACCTGGCCGCTTTCCTCGCCTCCCTCGCCTCCTCCTCCTCCGACGACGACGACGATGGCGACCTCTCCTACGCGCGCCTCCTCCTGCCGCGGCGCCCCGCCACGCTCCTCGCGCACAACTCCCTCCTCCGCGCCCTCGCTCGCGGCCGGCGCCCGCACCTCGCCTTCGGCGCGTTCCGCGACCTGCCGCTCGTGCCCGACAACTACTCCTTCACCTTCCTCGTCCGCGCCGCGACCGCCCTGGCCGCCGCCGCGGCGTCCGCGCTGGACGCGGCCCTGATCGCGGGGAGCGTGCACGCGTCGGCGCTCCGCCACGGACACGCGGGCGACCCGCACGTGCAGAGCGGGGCCGTCTCCATGTACGCCGCGGCCGGGGATGTGGGTGCCGCGCGGGCCGCGTTCGCGGAGATCGCGAGCCCGGACGTGGTGTGCGTCACCGCGATGGTGGGGGCTCTCGCCACTGGCGGCGAAGCGGACGCTGCGCGCGAGCTGTTTGACGGAATGCCTCAGAGGGACCATGTCGCGTGGAACGCCATGATCGCCGGGTATGTGCACACGGGCCGGTCAAGGGAGGCCTTGAGGCTGTTCGACGAAATGCGTCATGCTGGCGCTGCCGTGGGGGAGGTGACGCTGGTGTCAGCGCTCACTGCCTGTGCGCAATTGGGCGCGCTGGAACGAGGCAAGTGGGTGCACTCGTGTGCACATAGCCGTGGGATGCGGCTGTCGGTCACGCTCGGCACCGCGTTGATTGATATGTATTCCAAGTGTGGCGCGGTGGCGGCAGCCATGGAGGTGTTTGACAGCATGGGCGAAAGGAACGTTTACACTTGGACCAGTGCAGTGAGTGGCCTTGCGATGAATGGCATGGGGAGAGACTGCCTTGCGCTGTTCAAGCGCATGGAGAGCACAGGGGTTGAGCCTAACGGTGTCACCTTTGTCGTGGTCCTCCGTGGATGCTCCATGGCTGGGTTGGTAGATGAGGGACGAGCATGCTTCGATTCGATGAAGAGCAATCATGGAATTGATCCTTGGCTTGAACACTACGGTTGCATGGTTGATTTGTATGGTCGAGCTGGGCGTCTGGATGATGCCGTGAACTTCATCAATGGCATGCCATTGGAGCCACACGAAGGCGTGTGGGGAGCACTACTCAATGCGTCACGGATCCACAAAAACGTTGAACTGGGGAAATATGCAATGGATAAGCTCATGGCGATCGAGTCCAAGAATGATGCCGCCCATGTCCTGCTCTCTAACATCTATGCAGACTCGCAGAACTGGAAGGGTGTCAGCAATGTTCGGAACATGATGAAGGCCAAGGGAGTGAAAAAGGTGCCTGGGTGTAGTGCCATTGAGGTTGGTGGCAAG
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| Protein seq | MDGRNHMQMQPLINERSRCSTHGCRRSNSVPIIELYLQFPWNGPLPRGPWFVVAFGLVSPRAANARNGKSSRQSSSQAVGRSVSNQMRPLRDPAKLAAAASSQRHLREIHAHLLVSGRIASPSHLAAFLASLASSSSDDDDDGDLSYARLLLPRRPATLLAHNSLLRALARGRRPHLAFGAFRDLPLVPDNYSFTFLVRAATALAAAAASALDAALIAGSVHASALRHGHAGDPHVQSGAVSMYAAAGDVGAARAAFAEIASPDVVCVTAMVGALATGGEADAARELFDGMPQRDHVAWNAMIAGYVHTGRSREALRLFDEMRHAGAAVGEVTLVSALTACAQLGALERGKWVHSCAHSRGMRLSVTLGTALIDMYSKCGAVAAAMEVFDSMGERNVYTWTSAVSGLAMNGMGRDCLALFKRMESTGVEPNGVTFVVVLRGCSMAGLVDEGRACFDSMKSNHGIDPWLEHYGCMVDLYGRAGRLDDAVNFINGMPLEPHEGVWGALLNASRIHKNVELGKYAMDKLMAIESKNDAAHVLLSNIYADSQNWKGVSNVRNMMKAKGVKKVPGCSAIEVGGK
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0715700 | RBH | 0.127735 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g51790 | RBH | 0.078360 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0715700 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0031480 | RBH | 0.0 | 1.510728 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0031050 | RBH | 0.0 | 0.000000 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0031500 | RBH | 0.000000 | 2.567026 | 1.143520 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0030710 | RBH | 0.0 | 0.000000 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0030390 | RBH | 0.000000 | 3.975931 | 1.952949 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0493000 | RBH | 0.331599 | 0.5147595 | 0.894902 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_05g0024320 | SBH | 0.084323 | 0.170266 | 0.353596 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0484900 | RBH | 0.5109885 | 0.455176 | 3.300609 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0030350 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0030300 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0030590 | RBH | 1.059892 | 3.635145 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0030770 | RBH | 0.0 | 0.0 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0030520 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G030980 | RBH | 0.0 | 0.0 | 0.204285 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0030660 | RBH | 0.0 | 0.0 | 0.451880 |
