Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsIR64_01g0027300 | OGI:01083860 | 16/16 | IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | Chr01:28776029-28780674 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | TTAGATGTTGCTTCGTGTGACACTGACACTGGACTTGCTTCTGATGCATTCCATATATCGCACGATAGAGTACATGTACCTAACTGAACCTGATGTATCCATGTGAGTGATACCACCTCTAGCTAAGCTACCACGAAGAACTGAACTCGCCTAGTGAAGCCAAGAGACAAGACAAATGCTACTTACACTGAAGCTTTTTCAGAGGATAAAAACAGTTAATTAAGGGGCGTCACACGCACACCAAGGCAATTCGGTATGCAGATATACAAAGCTCTGACCTTTACTAGATCATTGGCTACAACTAAAGCTCCGGGCATGATCATGCCATGATATGTGCAAATTTAAAGGGATGGAAAGAAGGAATCACATGATTAAAGCCGTATGCTGTCGCCTCTGATGATCGGCAGCTTTTAATTTACAATGTTCCCCAGACTCCTGGTAGCAGTAGCACACTGTCGCCTCATGTCTTGAGAATTGCAGATGCAGCTTGGTTATCACTCAGAGATCAGCTAGGAGGACCACTGCATACATGCAGGAGGATTTGTCTCAAGGAAAGTGTTTTACTTGGAGGAGCCTAAAGTGTTTTGTTCCAATGGTCTTTATGTGGTCGCCTAGGTGAGGCAAGCATGCATGCAGGTTTGTCTCTACTCTCAAATGCTGTTGTTCTGTTCTCAAAAAAGAAAAAAGAAGTGCTGTTGTTCTGAAGATTGTCGAGGATGATCGATGTTCTCTTTGCAGGCTTTGCAGCCTTATATTGGGCTGGGCTTTGCATCTATGAGTTTGGATCAGCCCATTTTTGCCTCTGACATATGCATGGCTCGGTGGATCCACATCTATGAGCAAGGCATTGTAGTTCTTCATACCAGATGAAAAGAATCAAACCAAATGCATAATCCAGTTAAGCACGGCTACGAGGGAACATCTATTTACGTGTATATATAACTGCCACAGAACAATTTTAGACCCAAAAAACTGTTCTTTCCGTTACCAATGTGCGTCTACAACTGTTGGAGCTCAAAAAAGAGAAACTGGAACACCAAACAATCTCGCATTTCTTGCCAGCAGAACTCCCAGTTCATTTAATTTTTGCATCTTTCTTGCAAGAAGGCATCCATAAACGGACAACAAACAGAAACAGAGTAACAGACCATTACCTTCCTTCCCTTCAAATCCCTTCCTTTTCCATTGATAAAATCCCTAGTTGCGTCTCCTCTAACAAAAGATCACCAACGCTAAATAGAACGAACTGGACGAAGAGGACAGCTACTATGTCTGCTCCACACCACCGTCACCACAACATGGAATTGCTGGCAGGATCAGAGGGAATCCTCTTTTGTTGAATATATTTGATCGTACCAGCAACATGAGCCCATGCAGAAAACAATCGCCCAGACATAAGAACATCAAATTTCTTCCTTCAGACACTGTCCCTGTCTTCCAATTCCTGGCTCCAACCTTGGCAACGGCAGCACAAGGCCCCTGCAGTGACAATGTTACATTCATCAAATGGTAACATGATGGTTCTTTGTGCGTTGCCCTGCTTTGTTCTCAGTTTCACAGATAGCTTCAGGGATAAGGAAGGGAATGCGCGCTATAGGTTTGTCGCATTCAAGGGATTGTGGGGTCATCGACAATCAAGCACCTCTTGATCCACACGTTGTAGTTGAATGAATACAATTTCTAGACTTTGTCCATTGAACTGTTTCAGCAATGACTTTTGTTTCTATACCGCTGTTAGACCAAAATGTGGTGTCTTTCTTCAATCCAATACCGTAAGAGTAAGCAAAGAAAGTTCTCATAATATTGCTGACTATTATAGTGGTTATTGGCAGAATGCAGTTTGTCAGCTTCCCAGCCACCCACCATGACATTGGCTTTCCACTCTCCACAACAGTCTGATAATCAAAGATCTTGCTCGCTCAAATTCATGTTGATTGATCAAACAGGTGTAATCCCCTCAACATAGACAGAAAAACATACAGTAGCATGTATCTCAATACTTGATATTTTGGCTGTTGACTTTTTCTCATGGTTATACTCCTAGCCAATAGAATGAAGATCCATAATTCCATATTTTGCGATGCTGTTTGGCCTGTTCCATTAAGTGAATTCATAGATTAAGCATGTTAGACATGTCATAAGCAGAGGATTCACTATGACAATTAAGCAGCATAAACTCTAAAGAAAGCTATCAGAACAAAAGTACAGTGAATTTCTTTTGGAAAACAAGGTTATTATATGCAAGTGGAAAGTAATAAACATATTTGATTTAATCTTTATGGAGGGAACCGATGGAAAACATCACTAGAAACTGCGCATTTCCAGGGAGGTTCACATTGTAGAGATTTTCTTTTGCCGTGCAATAAACCTGAACAATTGATATGCTACTCAGCAGTCCATAAGAAAATGAAAGAAAAATGAATAGAATAAAATCGACATATGAAAATATGAAACAGTGCAATAACCTAGCTAACATTTCACTTTCCCAATAAATCTACCTAACATTGGTTGTACAATATGTCAATAATTACATTTGACTTAACTGCCTAGCTTGCTATGCAATAGTTTGAGCTACAGGTTTTGATCATTTATCACCAAACTCCACATATATGAACAATTAAAGTTAATGCTTAGTATATTTACGTATGTACTCCCTCCGGTTTCATTTTAATTGACGCTTTGGACAATGACACGTTTTACAAGATATACCTTTGACCTTATTTTTCTATTATAATATATACAATAAATAAATGCATGTTTACTTTTATTATAGTGTTTTGAAAGACAAATCTATATATGTTTTTCTAGTTTCTTTAAACTAAATATTTTTAAAGTTATTGATGGTCAAAGTTATAAAAATTTAACCTCAACCATATCCAAAACGTCAATTAATATAGAACCGGAGGGAGTAATGAACAAGATGTATGGGACTATGGAAAACAACATCGCACCATACCTGAACACTGCCAACTGCTCGTAACTTCAAAAAAAAAAAACAGATATCATTACATAACCTGGAAAAGTGAACACCAAAATGTAAGATCTATCGACAACAAATCTCCCACTTGTGTAACAGCATAGAAAGAGTAAGAAGTATATGACCTCTGAGCACAATGTTTGCTTGGCAACAGCTCGCGCATACGATGTATCAGTGGAGTGTAGTCTGTTCCTTTATTTCAATTTGAAACTGTTAACTGGCTCCACATTTCCTCAGCTTCTTGTCTTACCTTTTTCTTACTCCAATATGCACGTACAATCGTATCCCATGTTTCCCTCTCAGGGATGCATCTCTCTGATAACATGTCGCGCACAACATGAGCAGCTTTCTCTAAATTGTTCTTTTTCGATAAGCACTCGACAAGGAGATGGAAAGTTGTTGGCTTGGTAGAAATTCCACGGGTACGCATGCTCTGGTACACCTGAAAAGCCCTTACAACTTCACCCTTAGAACACAGTGCTGTCACCACTGCATCATTTATCCTGCCATGCAGGCTCCAAGTCAAGCGGTTTGGTCGGATGCCAGCAAAATTCATCTCATCGAGGTAATTTGAAGCCTCCAAAGCCCTTCCTGCATCACATAGCCCAACAATTAGCTTACCGAACAACCCAGCATCAGGCTTCCTCCCCTGGAGACGCATCCGGTCTAAAATCTCCATGGCCTGACCCAGACAGCCCTCCTTACAGAGCCCATCAATAACAGAACTGTATGTGATTGTATTTGGAAGCTTCCTCTCCTTAACCATCCTGTCCAGCAGCTCCACTGCTGAGGCAGCACGCCCACCCTTGCACAATCCATCGATCAGTGAACTGTATGTTACCACATTCGGCATGATCCCTCTCCTAGCCATTTCATCGAACAGTTTCAGAGCATCATCAAAGCAAGCCTCCCGCGCGAGCCAGTGGATAAGAGTGGTGTAAGTAACCACCGTTGGTGCAGTGCCATTCGCAATCATCTCCGCGAACAGGTCGCGGGCCTCCGGCAGCCGGCCGCGGCGGCAGAGCCCATCGATCACAGTATTGTAGGAGCACGCGTCGGGTTTGGGGATGTTCCGAAAAACGCGAACGGCGTCGTCGATGGGGACGGCGGCGTCGGAGCAGTGGGCCTTGACGAGGACATTGTAGGTGGCGGTGGTGGGGGCAAAGCCGGCGGCGCGCATGTCGGCGAGGAGGGAGCGGGCCAGGGAGAGGTGGGAGTGAGCGACGAGGGCGGCGAGGACCGCGGTGTAGGAGCGGGCGGAGTGCGGGAGGCCGAGGGCGGAGGGCGCGGAGCGGAAGAGGTGGAGCGCGGCGAGGGGCTGGTGGGCGCGGGAGTAGGCGCGGAGGAGGGAGAGGAACGGGGGCTCGAGCTCGCCGGGCGAGGGGAAGAGCTCGCGCGAGCGGGAGAGGAGGGAGGATGCGAGCGGGAGGAGGCTGGCGGAGGCGAGGCGGGACGTGAGGAGGGAGACGGTGTCGCGCGACGGGAGGACGGGCGCGGCGGCGGCGGCCGTGGAATCGTCGGGCGGGGACGCGGACGAGGGCCTGGCGGTGGCCGCGTCGAAGAGCGCCAGGGCCCGGCGCGGGTCACGCTCCGCGCGGACCAGGCGGTGGAGGTGGTCGGCGGTGAGGGTCTTGGGCCATCTGGTCGCCGAGGGGGTGGCCGGCGGCAT
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| CDS seq | ATGCCGCCGGCCACCCCCTCGGCGACCAGATGGCCCAAGACCCTCACCGCCGACCACCTCCACCGCCTGGTCCGCGCGGAGCGTGACCCGCGCCGGGCCCTGGCGCTCTTCGACGCGGCCACCGCCAGGCCCTCGTCCGCGTCCCCGCCCGACGATTCCACGGCCGCCGCCGCCGCGCCCGTCCTCCCGTCGCGCGACACCGTCTCCCTCCTCACGTCCCGCCTCGCCTCCGCCAGCCTCCTCCCGCTCGCATCCTCCCTCCTCTCCCGCTCGCGCGAGCTCTTCCCCTCGCCCGGCGAGCTCGAGCCCCCGTTCCTCTCCCTCCTCCGCGCCTACTCCCGCGCCCACCAGCCCCTCGCCGCGCTCCACCTCTTCCGCTCCGCGCCCTCCGCCCTCGGCCTCCCGCACTCCGCCCGCTCCTACACCGCGGTCCTCGCCGCCCTCGTCGCTCACTCCCACCTCTCCCTGGCCCGCTCCCTCCTCGCCGACATGCGCGCCGCCGGCTTTGCCCCCACCACCGCCACCTACAATGTCCTCGTCAAGGCCCACTGCTCCGACGCCGCCGTCCCCATCGACGACGCCGTTCGCGTTTTTCGGAACATCCCCAAACCCGACGCGTGCTCCTACAATACTGTGATCGATGGGCTCTGCCGCCGCGGCCGGCTGCCGGAGGCCCGCGACCTGTTCGCGGAGATGATTGCGAATGGCACTGCACCAACGGTGGTTACTTACACCACTCTTATCCACTGGCTCGCGCGGGAGGCTTGCTTTGATGATGCTCTGAAACTGTTCGATGAAATGGCTAGGAGAGGGATCATGCCGAATGTGGTAACATACAGTTCACTGATCGATGGATTGTGCAAGGGTGGGCGTGCTGCCTCAGCAGTGGAGCTGCTGGACAGGATGGTTAAGGAGAGGAAGCTTCCAAATACAATCACATACAGTTCTGTTATTGATGGGCTCTGTAAGGAGGGCTGTCTGGGTCAGGCCATGGAGATTTTAGACCGGATGCGTCTCCAGGGGAGGAAGCCTGATGCTGGGTTGTTCGGAAGGGCTTTGGAGGCTTCAAATTACCTCGATGAGATGAATTTTGCTGGCATCCGACCAAACCGCTTGACTTGGAGCCTGCATGGCAGGATAAATGATGCAGTGGTGACAGCACTGTGTTCTAAGGGTGAAGTTGTAAGGGCTTTTCAGGTGTACCAGAGCATGCGTACCCGTGGAATTTCTACCAAGCCAACAACTTTCCATCTCCTTGTCGAGTGCTTATCGAAAAAGAACAATTTAGAGAAAGCTGCTCATGTTGTGCGCGACATGTTATCAGAGAGATGCATCCCTGAGAGGGAAACATGGGATACGATTGTACGTGCATATTGGAGTAAGAAAAAGGGGCCTTGTGCTGCCGTTGCCAAGGTTGGAGCCAGGAATTGGAAGACAGGGACAGTGTCTGAAGGAAGAAATTTGATGTTCTTATGTCTGGGCGATTGTTTTCTGCATGGGCTCATGTTGCTGGCGAGTTCAGTTCTTCGTGGTAGCTTAGCTAGAGGTGGTATCACTCACATGGATACATCAGGTTCAGTTAGGTACATGTACTCTATCGTGCGATATATGGAATGCATCAGAAGCAAGTCCAGTGTCAGTGTCACACGAAGCAACATCTAA
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| Protein seq | MPPATPSATRWPKTLTADHLHRLVRAERDPRRALALFDAATARPSSASPPDDSTAAAAAPVLPSRDTVSLLTSRLASASLLPLASSLLSRSRELFPSPGELEPPFLSLLRAYSRAHQPLAALHLFRSAPSALGLPHSARSYTAVLAALVAHSHLSLARSLLADMRAAGFAPTTATYNVLVKAHCSDAAVPIDDAVRVFRNIPKPDACSYNTVIDGLCRRGRLPEARDLFAEMIANGTAPTVVTYTTLIHWLAREACFDDALKLFDEMARRGIMPNVVTYSSLIDGLCKGGRAASAVELLDRMVKERKLPNTITYSSVIDGLCKEGCLGQAMEILDRMRLQGRKPDAGLFGRALEASNYLDEMNFAGIRPNRLTWSLHGRINDAVVTALCSKGEVVRAFQVYQSMRTRGISTKPTTFHLLVECLSKKNNLEKAAHVVRDMLSERCIPERETWDTIVRAYWSKKKGPCAAVAKVGARNWKTGTVSEGRNLMFLCLGDCFLHGLMLLASSVLRGSLARGGITHMDTSGSVRYMYSIVRYMECIRSKSSVSVTRSNI |
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| Function | Pentatricopeptide repeat-containing protein At5g46100 [UniProtKB/Swiss-Prot:Q9FNL2] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsIR64_01g0027300 | OsIR64_01g0027300.01 | Chr01 | 28776029 | 28780674 | - | NAM | ||
| CDS seq | ATGCCGCCGGCCACCCCCTCGGCGACCAGATGGCCCAAGACCCTCACCGCCGACCACCTCCACCGCCTGGTCCGCGCGGAGCGTGACCCGCGCCGGGCCCTGGCGCTCTTCGACGCGGCCACCGCCAGGCCCTCGTCCGCGTCCCCGCCCGACGATTCCACGGCCGCCGCCGCCGCGCCCGTCCTCCCGTCGCGCGACACCGTCTCCCTCCTCACGTCCCGCCTCGCCTCCGCCAGCCTCCTCCCGCTCGCATCCTCCCTCCTCTCCCGCTCGCGCGAGCTCTTCCCCTCGCCCGGCGAGCTCGAGCCCCCGTTCCTCTCCCTCCTCCGCGCCTACTCCCGCGCCCACCAGCCCCTCGCCGCGCTCCACCTCTTCCGCTCCGCGCCCTCCGCCCTCGGCCTCCCGCACTCCGCCCGCTCCTACACCGCGGTCCTCGCCGCCCTCGTCGCTCACTCCCACCTCTCCCTGGCCCGCTCCCTCCTCGCCGACATGCGCGCCGCCGGCTTTGCCCCCACCACCGCCACCTACAATGTCCTCGTCAAGGCCCACTGCTCCGACGCCGCCGTCCCCATCGACGACGCCGTTCGCGTTTTTCGGAACATCCCCAAACCCGACGCGTGCTCCTACAATACTGTGATCGATGGGCTCTGCCGCCGCGGCCGGCTGCCGGAGGCCCGCGACCTGTTCGCGGAGATGATTGCGAATGGCACTGCACCAACGGTGGTTACTTACACCACTCTTATCCACTGGCTCGCGCGGGAGGCTTGCTTTGATGATGCTCTGAAACTGTTCGATGAAATGGCTAGGAGAGGGATCATGCCGAATGTGGTAACATACAGTTCACTGATCGATGGATTGTGCAAGGGTGGGCGTGCTGCCTCAGCAGTGGAGCTGCTGGACAGGATGGTTAAGGAGAGGAAGCTTCCAAATACAATCACATACAGTTCTGTTATTGATGGGCTCTGTAAGGAGGGCTGTCTGGGTCAGGCCATGGAGATTTTAGACCGGATGCGTCTCCAGGGGAGGAAGCCTGATGCTGGGTTGTTCGGAAGGGCTTTGGAGGCTTCAAATTACCTCGATGAGATGAATTTTGCTGGCATCCGACCAAACCGCTTGACTTGGAGCCTGCATGGCAGGATAAATGATGCAGTGGTGACAGCACTGTGTTCTAAGGGTGAAGTTGTAAGGGCTTTTCAGGTGTACCAGAGCATGCGTACCCGTGGAATTTCTACCAAGCCAACAACTTTCCATCTCCTTGTCGAGTGCTTATCGAAAAAGAACAATTTAGAGAAAGCTGCTCATGTTGTGCGCGACATGTTATCAGAGAGATGCATCCCTGAGAGGGAAACATGGGATACGATTGTACGTGCATATTGGAGTAAGAAAAAGGGGCCTTGTGCTGCCGTTGCCAAGGTTGGAGCCAGGAATTGGAAGACAGGGACAGTGTCTGAAGGAAGAAATTTGATGTTCTTATGTCTGGGCGATTGTTTTCTGCATGGGCTCATGTTGCTGGCGAGTTCAGTTCTTCGTGGTAGCTTAGCTAGAGGTGGTATCACTCACATGGATACATCAGGTTCAGTTAGGTACATGTACTCTATCGTGCGATATATGGAATGCATCAGAAGCAAGTCCAGTGTCAGTGTCACACGAAGCAACATCTAA
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| Protein seq | MPPATPSATRWPKTLTADHLHRLVRAERDPRRALALFDAATARPSSASPPDDSTAAAAAPVLPSRDTVSLLTSRLASASLLPLASSLLSRSRELFPSPGELEPPFLSLLRAYSRAHQPLAALHLFRSAPSALGLPHSARSYTAVLAALVAHSHLSLARSLLADMRAAGFAPTTATYNVLVKAHCSDAAVPIDDAVRVFRNIPKPDACSYNTVIDGLCRRGRLPEARDLFAEMIANGTAPTVVTYTTLIHWLAREACFDDALKLFDEMARRGIMPNVVTYSSLIDGLCKGGRAASAVELLDRMVKERKLPNTITYSSVIDGLCKEGCLGQAMEILDRMRLQGRKPDAGLFGRALEASNYLDEMNFAGIRPNRLTWSLHGRINDAVVTALCSKGEVVRAFQVYQSMRTRGISTKPTTFHLLVECLSKKNNLEKAAHVVRDMLSERCIPERETWDTIVRAYWSKKKGPCAAVAKVGARNWKTGTVSEGRNLMFLCLGDCFLHGLMLLASSVLRGSLARGGITHMDTSGSVRYMYSIVRYMECIRSKSSVSVTRSNI
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.020860 | 0.0 | 0.067954 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0672166 | RBH | 0.134514 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g48140 | RBH | 0.071119 | 0.000000 | 0.000000 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0672166 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0028670 | RBH | 0.054385 | 0.0 | 0.355043 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0028200 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0028650 | RBH | 0.000000 | 0.0 | 0.373476 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0027820 | RBH | 0.0 | 0.035491 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0027580 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0459000 | RBH | 0.1196875 | 0.2884685 | 0.121707 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_05g0028020 | RBH | 0.060738 | 0.000000 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0447600 | RBH | 0.2447655 | 0.592428 | 1.6253615 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0027590 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0027450 | RBH | 0.0 | 0.000000 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0027770 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0027900 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0027650 | RBH | 0.0 | 0.000000 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G028110 | RBH | 0.000000 | 0.0 | 0.213504 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0027800 | RBH | 0.0 | 0.0 | 0.887297 |
