Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsIR64_01g0009440 | OGI:01023950 | 15/16 | IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | Chr01:7625568-7629128 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | AAGCAGCATAGATTGGCATGACTTTTATAAAGTAAAAATAAATCGCAATAACAATCATGTTTTATTTTTAAAATCTCAATGAAAATAAACAGGGGAGACAACGGGTAGACCATACAGGAGTGCAGTGGAATGGAGCCAGCAGCGGTTGGCGGGACTGCTAGAAATTAAAAAAGGGAATCCTGAAAATTCGAAATAAAAAATAAAATAAGTTTCATAAAATAGAAAAAATAATTATAAGAGTTCAAGTAGGAATAAGAAAATATCGGAATGAAAAATATGGAATTTCAAAAAAAAAGTCCATCTAGAACTCAACTATGATAGATGACAATAAAGTGGAGAGAAATATTAGGCCCGTAAAGGAGTAAGTTGGTGGCAGTTGATGCGACATCTAAAAACTATAAACAAAACCACAAATAGAATCGAAAACCACAAATAGAATCCCAATGATGATTAAGAGAAGGGACGATAGACAAGCTGTTAAGCAGCACGGTCACAACGGTTGGTGGGACTTCTAGAAAATAAAAAGTAAATCACAATAACAATCATGTTCGATTTTTAAAATCTCCATGACAAGTATAGTATGGCGAAGCCGGTGACGGTTGGGCGGATTTCTAGAAAGTAAAAGATGAACCCCCAACGATAGTTATGTTCAATTTTTAGAATCCCAACATCAATAAATATGGGAGATAACAGGCGAATCATAGAGAAATACAATATTAACGTTTGAAACACTCCTAAAAATTCTAATAACGAAACCCGACGAGACAATGGACTCTTAAAAACTAGAAGGTGTAATTTTTAAAGGTTTAAAGGAAGATAAATAAAAGTCGTGATAGATCGAATAAACAAATAATGGAGTGATAAAAGAGTAAAGGGTAACTACTGGTGTGACTTTTAAATAAAAAACTATAAAAATTTAAGGATGATCTTTCAAGGTTATAAGACAACATAATGGCTATTTAACAAATTTTTAGTAATGTCAAATATAGAAAATAGATAATTTTATATGGGTGCTAGCCGCGCAATTGCGCAGGTCACCTAGCTAGTTTCTACTTAATACAAACTCGCGTGTGCAGCTTGCACGCAACAGAAGATAAAATCATGCATACATAGCTCCATCATGCATCATACCAAATGTGCTCCGGTGCAGTACATCGTTGTGGTTATCATCAAACTTTCAAGCCCAAATTTACATGGATGGAAAGGCAAACTTTAAAAACCACAATAAAGTTTACTAAGGATTTTAACAAGAGGAACAGTTTGCTTCATCATCTACGGGTGCATCGCATTCCAGGCCCTGAAATATGCAGGAATTCATTAATGGCTACTGCTGATGTTTTACATGGCAAGGCAGTGCATGGCGAGAGGCCAGTGTTGGTGTTATGATGCTACTCCACGTTTAAAAAAATATTGTTTTGAAGCCATTTACTCCAACAGTATCCATGGTGTGTATCATTTTCCTCTATTTTTTCTGATAAAAGTTGACCATTCCAATACATTCTGCCCATGGTGCCCAAGATTTTTTGTGTTACAAGAAAAGTCTAGCACATGAAACTTTAACTATTTAACTTTATGGGACAAATTGTAGGTAGTGCAGACCTAATGGTTTTAGAATTTACAAGTGGGAATATGAGCTACAGTTTGATAGCTGACGCAAAATTGAACAATACCAAGGGTCCTGCAACATGACAGGGAGAAGATATACGAAATTTGTCATAAAAAAAGAAGTCCACCAGCAATATTTCTCAGGAAACAACGGTACGATACTAATCGTTAGTCTCATTGATTATTTCTATAGTTGTACAAGAGTTTGCCCTAAAACATAGCCTTGTACTAAAATGATGTGCAGCTAGTATTCTTGATATCTTTTAGAAGTGGAAACTGCATAATACTAAACATGTAGCTAGCTGAACTTGAGTTTTTCACACCATCTTTGAGAAATCAGTTATACCTTCCATGTAATTCAATGTTTTGAATTTCAACAAAAGAAAGAAAGGCTCCCCAACAGGTTTGAGTTCAGTATCATGATGAAATCACTTGAAAATAGCATTTCGCCTATTAAGCTAGAGAAGGAGATGGATAATACTTTCTTAGGCAAAATAAACAACCAATTAAAAGATAGCAAAATGTGGGTGAAACATTATGGTCTCAGAAAAGCTCGGTGATAGGAACGTTAGGAGTGGGCTGCACAGTTTCAACCTTTAACCTTGGATATTTGATCTAGAAACATGCATCAAGGAAAAAGAAAACATGTTCAACTTTCTCCTTGACCATACTAGTCAAAGATTCTTTGGCGTTACATCTTTTGAAAAAGGACTAGGAAATTTCGGAAAGACCAATTCTGCATATTTCTCTGTTCAAACAAATGGAAATATCTTCAAGAGTTTGAAGCTCCTATTTGGATATTTCCTAGTTCTCCATTCTCCAACTCCCTATTTACCCCAATAATTAAATCCTAGACTATTGACCATAACAGATGGGCCACCCAATTCTTCCACGGCTTTACTATGCACAAAACCTTTTTCTCTTCCTCTCCCTCTGCAACAAATTAGCACCAGTTCCTGACTCCATATATGACAAAACATCTCTTTCTCCTCACCCTCTCATGTACTGACCCACCAAAGCATCAGCTCTCAGGTCTCAGCTATATATATTCACACTTGTATGGCTTAGAAAATTCATGGTGCCTCAGCTCTCAGCATATTGTCACACATATGGCTTTGAAAACTCATGCTCTTATTAGTCCCTTCTCTAATGCTGAACAGCTTTCCCCATTCCCCACGCCGCAACTTTCGCACGAGAGATTTTAACTAATTGCTACTGCTCCTGGTCTCGATTACTACATTCCCAATCAGAAACCCCTTGTTCTGTATCTTGAAAGCTACAGCGATCTCCCATAGTTCCAATTCCAAATCCCCCATCTAATTCCCAGATCAAATTCTTCCATCGAGTCAACTGATCGTCCAATTTCAATCTAGATCTAGTTGGGTCAAGTCAAGAGTCTTCGTTCCAAACAGATCTAATAAATAATCTACTACTAGTCAAGTATAAGCAAAGCAGAGATCCAGCTAGGAGTGAGGGTTCAAGAACGCACCATCGATCTCACAGAAGTTCGCCATCGCCATCATCATCTAGGGGGCCTCGCGGTGCACGAAGAAGGCGTAGAAGCCGGCGACGATGGTGCCGAGCCCCATCACCCAGACGCCCGCGGCGCCCCAGAGCGGCATGATGGCGGCGACCTTGTAGGAGAACATGAGCGTGAGGAGCGTGGAGAGCCCCCACACCGCCGCCTTCATCGACGCCCGGGCCTGCCCCCCCGCGGGGGCGCGCTCCAGCAGGTGGAGGCAGCGGAAGAGCGCGATGAGCGCGAGGTAGGCGACGACGACGAAGGCCACCGCGGAGGGGTCGCTGCTGGAGCGGTAGATCGCCATGCCGCAGTTGAAGCTCAGGAACGCGAACCCCAGCGACGGCAGCCACCCCGGGCGGCCGCCGCGATCCATCGCCGCCGGCGCAACGCGGCGGCTGTGGCGGATTTCTCGTCGGGGAATTCAATCTGGCTAT
More
|
||||||||||
| CDS seq | ATGGATCGCGGCGGCCGCCCGGGGTGGCTGCCGTCGCTGGGGTTCGCGTTCCTGAGCTTCAACTGCGGCATGGCGATCTACCGCTCCAGCAGCGACCCCTCCGCGGTGGCCTTCGTCGTCGTCGCCTACCTCGCGCTCATCGCGCTCTTCCGCTGCCTCCACCTGCTGGAGCGCGCCCCCGCGGGGGGGCAGGCCCGGGCGTCGATGAAGGCGGCGGTGTGGGGGCTCTCCACGCTCCTCACGCTCATGTTCTCCTACAAGGTCGCCGCCATCATGCCGCTCTGGGGCGCCGCGGGCGTCTGGGTGATGGGGCTCGGCACCATCGTCGCCGGCTTCTACGCCTTCTTCGTGCACCGCGAGGCCCCCTAG |
||||||||||
| Protein seq | MDRGGRPGWLPSLGFAFLSFNCGMAIYRSSSDPSAVAFVVVAYLALIALFRCLHLLERAPAGGQARASMKAAVWGLSTLLTLMFSYKVAAIMPLWGAAGVWVMGLGTIVAGFYAFFVHREAP |
||||||||||
| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsIR64_01g0009440 | OsIR64_01g0009440.01 | Chr01 | 7626665 | 7629108 | - | NAM | ||
| CDS seq | ATGGATCGCGGCGGCCGCCCGGGGTGGCTGCCGTCGCTGGGGTTCGCGTTCCTGAGCTTCAACTGCGGCATGGCGATCTACCGCTCCAGCAGCGACCCCTCCGCGGTGGCCTTCGTCGTCGTCGCCTACCTCGCGCTCATCGCGCTCTTCCGCTGCCTCCACCTGCTGGAGCGCGCCCCCGCGGGGGGGCAGGCCCGGGCGTCGATGAAGGCGGCGGTGTGGGGGCTCTCCACGCTCCTCACGCTCATGTTCTCCTACAAGGTCGCCGCCATCATGCCGCTCTGGGGCGCCGCGGGCGTCTGGGTGATGGGGCTCGGCACCATCGTCGCCGGCTTCTACGCCTTCTTCGTGCACCGCGAGGCCCCCTAG
More
|
|||||||
| Protein seq | MDRGGRPGWLPSLGFAFLSFNCGMAIYRSSSDPSAVAFVVVAYLALIALFRCLHLLERAPAGGQARASMKAAVWGLSTLLTLMFSYKVAAIMPLWGAAGVWVMGLGTIVAGFYAFFVHREAP |
|||||||
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsIR64_01g0009440 | OsIR64_01g0009440.02 | Chr01 | 7625568 | 7629128 | - | IsoSeq | ||
| CDS seq | ATGATGATGGCGATGGCGAACTTCTGTGAGATCGATGGATTCCCTTTTTTAATTTCTAGCAGTCCCGCCAACCGCTGCTGGCTCCATTCCACTGCACTCCTGTATGGTCTACCCGTTGTCTCCCCTGTTTATTTT |
|||||||
| Protein seq | MMMAMANFCEIDGFPFLISSSPANRCWLHSTALLYGLPVVSPVYF |
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
| AL | Chr01 | 7625568 | 7628662 | - | OsIR64_01g0009440.02 | OsIR64_01g0009440.02,OsIR64_01g0009440.01 | All |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.652645 | 1.487919 | 1.269071 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0238200 | RBH | 0.000000 | 0.429763 | 3.159619 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g13660 | RBH | 0.097624 | 0.691802 | 0.468313 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0238200 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0009880 | RBH | 0.916873 | 11.647453 | 6.699035 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0009520 | RBH | 0.116433 | 5.018137 | 4.429942 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0009860 | RBH | 1.619388 | 12.671449 | 8.383678 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0009410 | RBH | 0.610647 | 0.194464 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0022200 | SBH | 0.0 | 0.0 | 1.911736 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0125200 | RBH | 19.1723845 | 51.4921435 | 109.690052 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0124900 | RBH | 13.4470955 | 31.5232485 | 43.5639725 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0007860 | RBH | 0.204936 | 0.177296 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0009460 | RBH | 0.405406 | 17.967485 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0009430 | RBH | 4.714083 | 10.071245 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0009550 | RBH | 1.187216 | 2.580386 | 0.745885 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0009370 | RBH | 0.424765 | 17.423248 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G009500 | RBH | 0.781950 | 6.172066 | 10.201579 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0009400 | RBH | 3.189519 | 7.548456 | 23.316225 |
