Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsGoSa_12g0013630 | OGI:12050040 | 16/16 | GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | Chr12:18113351-18116921 | ||||||||
| Gene Symbol | RGA2 | ||||||||||
| DNA seq | tcaactatcaagcccttgatctgctccatcttcagcctcttcaaactcgccttcctatcattaaaaacatgatattgttagtcaatctgatattcccatactttcattttagaacctcagaatagaaccaatacaaacaacaaataaatttactttagaaatcatttgtttctccatttcctcaaaaacaaaagagcaattggtgcttggtgtgtaaacgcacctcaaacctatagtaagaccattcagcatataagccatggaggaatttctgtggcagatactcgttgaccatgggaatcactttgaagaaaggttggaaggagtgtttgacattagcatcgtcccactgtaagtgctccaaccattcttggtcacaatgaacagccttcagattacacgggacagttgtgaaaggtagtgtcatcagctgaggacaacccagcacttgcaagcattctaatgaaggaaagtggaaggaggaatggcagatggaagtcaatctctttaatttgatcaaagcaaaccttttgaggcaaggttgtgaaagaggttttctttctttttcatcagcatttggaagattgtcactgttcgaaacacttccaattatttgctgtagtgcctcacagctaaatactatcagatcttcaagatatggaaaacgttgaatccaggatatgtttgttaagctaatgcaagttataagatccaaccgtttcaggttctgaaagagatcctggctttcaactcctttccaaaatatatctgtgaagtgatgaccacatatgtatagcttctcaagattagaacttcgatgtggcacattgctttcgaatactatttgttcctcatgtgtgaagatgtataactcagacagattcttttgtatcagatcatttccaaaaaaactgtctgaaaatgcaaaacctttccattcatctagatactttgttaaaatgataacacacagagacctgactggtaagtcggttttgcagatcatgttaaagtactttatcatatttatggtgattccaagagctttcaagtttctcatgcatttaagaacaccaaatggtggttcaaatgtagaaggttgttccaactggaatgagcaaaagtctgcaacctgcagtctggagagctttgaaagaatagtttcaggcatttctctgataggatttgacctaagaagcaagtactccagcttaaaaagggatccgagctcttcaggtaagtacttgattttgttatccgataaattcagatagtacaagttcataaggttgcaaacttcagtaggaaatgttttgagccagttccgtgaaagatcaaggtattgaagggagataaaagaacacaagccagttactgaactttgacttaaatgattatcctgaagtatcagcacggtaagcttggtctgctccccagaaatagcaggcagctctgctatttcagtccccactgataatatttgttctgcagcatgccagtgagatactgtttgtacaacccacttattcttgtcccttccttcattgcttacaatccatagtgccatgtcacgtatcacatcatgcattttaactagtctgtcatcatcagtttcctccagaaggcacttgtctaccaactcacgaattcgtgcatatcctgcgttgtaacatctttgaatatcctcctcctctactagacccagtcccatccagtactcagatagtttgtttctatctaacagataatcatcaggccataaggcgcatgatgtgaaacaatctttcagattagtatcacttagatattcataactgagtttcagtcgagcaaacacactttcttcgttgcaaactggcccttcaatctcattaagccgtgattgctgaagaaagtcgatgcaattctgccattctcgtggatgcctcttggtagacatggccctgccaactacaataagagctaacggcagtccggcaagttcatttgcaacctcttttgccagtggaagtacaagggggtgattttcaataatttcagtaccaacattttccttgaaaagatgccatgcatctgtttcatccaggcaatctactttaatcctttgcccattcttgacacccatttggccacaaacactttcagagcgtgttgttagcaacaatttttgtttgtaattgccaattgagctaactttgtttggaatcccaaccttatcaagatcaacatgttcccacaaatcatccaataatataagaaaatttttacttttgagaaattcatatatgataactgcctgagattctgtgtcattcttcttctgcagcatctgttccccaacaattgagtcttgaaccttcaagggcaacaagtaaaaaagtacttttgtcatttggagcaaactggcagagagcttaactaaataatgttgtaaagtatttaaaattagaagtatatgcagttttttgaaatatcaaaatgttagttggctgccaggaacccttatgtaacgctagttattactccctccgatcagttttatatgctgtttccgacagccaaaatatgttatgtgtaagtcatttcgctggtccgaaacaacaaatatttccatccggagggagtatattacatgatagtagtacctgatgacagtcaatatagtatcctagaaatcgtagctcctataaaacaaactataattttagctggagctttgagtctctgtgaattgctcattaggccgcttaccctagatggtttgtaatttttgtcttttgggcaagctggatgcattcatctttgcaacaaatatactttagcaagatacagaaacatgtacgtcaagggacaacgattagtttcatctaattagttaaagacaaactttgatcactccctcgttaaagggagcacaacatacctttgcaacagagcaacctttggaagcagtaactcgaataacaacatcaaaagcagggtttttgtgaaacaagttattgatctgatagagcagatgtgtctttcccacacctccagggccccacaacccaaccttgcttacagcctcatccttgatgaacttgacagcgaggttgcgataccgatctgtaccagttaggcttatgtcagttatgggcacttcagtgcaggcctgtggcaccatgacaccatattcttcaaatatgccctcactgtatatcttctctacagcctgacaatttgctgctgcactcttggctatcatgtagtttacacagatacaaggggacagactccccatgcacttggtcctcttatcatactttgcttggattgtctcagtctccacacatacatgctcagcacgcttcagccatccttcaacttcatgccttggctgcataccttttcgtgcagcaccctccaccttggtctcaacatcgctaaccctctcccttaaacgctcggtggcagttttgagagcacgcacgaacttctgggctttgaagaaataggcagcatgctgttttgcgaggcttatcaagggagtcaggacaacaccacagcacttgatgccaatgatctccat
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| CDS seq | atggagatcattggcatcaagtgctgtggtgttgtcctgactcccttgataagcctcgcaaaacagcatgctgcctatttcttcaaagcccagaagttcgtgcgtgctctcaaaactgccaccgagcgtttaagggagagggttagcgatgttgagaccaaggtggagggtgctgcacgaaaaggtatgcagccaaggcatgaagttgaaggatggctgaagcgtgctgagcatgtatgtgtggagactgagacaatccaagcaaagtatgataagaggaccaagtgcatggggagtctgtccccttgtatctgtgtaaactacatgatagccaagagtgcagcagcaaattgtcaggctgtagagaagatatacagtgagggcatatttgaagaatatggtgtcatggtgccacaggcctgcactgaagtgcccataactgacataagcctaactggtacagatcggtatcgcaacctcgctgtcaagttcatcaaggatgaggctgtaagcaaggttgggttgtggggccctggaggtgtgggaaagacacatctgctctatcagatcaataacttgtttcacaaaaaccctgcttttgatgttgttattcgagttactgcttccaaaggttgctctgttgcaaaggttcaagactcaattgttggggaacagatgctgcagaagaagaatgacacagaatctcaggcagttatcatatatgaatttctcaaaagtaaaaattttcttatattattggatgatttgtgggaacatgttgatcttgataaggttgggattccaaacaaagttagctcaattggcaattacaaacaaaaattgttgctaacaacacgctctgaaagtgtttgtggccaaatgggtgtcaagaatgggcaaaggattaaagtagattgcctggatgaaacagatgcatggcatcttttcaaggaaaatgttggtactgaaattattgaaaatcacccccttgtacttccactggcaaaagaggttgcaaatgaacttgccggactgccgttagctcttattgtagttggcagggccatgtctaccaagaggcatccacgagaatggcagaattgcatcgactttcttcagcaatcacggcttaatgagattgaagggccagtttgcaacgaagaaagtgtgtttgctcgactgaaactcagttatgaatatctaagtgatactaatctgaaagattgtttcacatcatgcgccttatggcctgatgattatctgttagatagaaacaaactatctgagtactggatgggactgggtctagtagaggaggaggatattcaaagatgttacaacgcaggatatgcacgaattcgtgagttggtagacaagtgccttctggaggaaactgatgatgacagactagttaaaatgcatgatgtgatacgtgacatggcactatggattgtaagcaatgaaggaagggacaagaataagtgggttgtacaaacagtatctcactggcatgctgcagaacaaatattatcagtggggactgaaatagcagagctgcctgctatttctggggagcagaccaagcttaccgtgctgatacttcaggataatcatttaagtcaaagttcagtaactggcttgtgttcttttatctcccttcaataccttgatctttcacggaactggctcaaaacatttcctactgaagtttgcaaccttatgaacttgtactatctgaatttatcggataacaaaatcaagtacttacctgaagagctcggatccctttttaagctggagtacttgcttcttaggtcaaatcctatcagagaaatgcctgaaactattctttcaaagctctccagactgcaggttgcagacttttgctcattccagttggaacaaccttctacatttgaaccaccatttggtgttcttaaatgcatgagaaacttgaaagctcttggaatcaccataaatatgataaagtactttaacatgatctgcaaaaccgacttaccagtcaggtctctgtgtgttatcattttaacaaagtatctagatgaatggaaaggttttgcattttcagacagtttttttggaaatgatctgatacaaaagaatctgtctgagttatacatcttcacacatgaggaacaaatagtattcgaaagcaatgtgccacatcgaagttctaatcttgagaagctatacatatgtggtcatcacttcacagatatattttggaaaggagttgaaagccaggatctctttcagaacctgaaacggttggatcttataacttgcattagcttaacaaacatatcctggattcaacgttttccatatcttgaagatctgatagtatttagctgtgaggcactacagcaaataattggaagtgtttcgaacagtgacaatcttccaaatgctgatgaaaaagaaagaaaacctctttcacaaccttgcctcaaaaggtttgctttgatcaaattaaagagattgacttccatctgccattcctccttccactttccttcattagaatgcttgcaagtgctgggttgtcctcagctgatgacactacctttcacaactgtcccgtgtaatctgaaggctgttcattgtgaccaagaatggttggagcacttacagtgggacgatgctaatgtcaaacactccttccaacctttcttcaaagtgattcccatggtcaacgagtatctgccacagaaattcctccatggcttatatgctgaatggtcttactataggtttgaggaaggcgagtttgaagaggctgaagatggagcagatcaagggcttgatagttga
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| Protein seq | MEIIGIKCCGVVLTPLISLAKQHAAYFFKAQKFVRALKTATERLRERVSDVETKVEGAARKGMQPRHEVEGWLKRAEHVCVETETIQAKYDKRTKCMGSLSPCICVNYMIAKSAAANCQAVEKIYSEGIFEEYGVMVPQACTEVPITDISLTGTDRYRNLAVKFIKDEAVSKVGLWGPGGVGKTHLLYQINNLFHKNPAFDVVIRVTASKGCSVAKVQDSIVGEQMLQKKNDTESQAVIIYEFLKSKNFLILLDDLWEHVDLDKVGIPNKVSSIGNYKQKLLLTTRSESVCGQMGVKNGQRIKVDCLDETDAWHLFKENVGTEIIENHPLVLPLAKEVANELAGLPLALIVVGRAMSTKRHPREWQNCIDFLQQSRLNEIEGPVCNEESVFARLKLSYEYLSDTNLKDCFTSCALWPDDYLLDRNKLSEYWMGLGLVEEEDIQRCYNAGYARIRELVDKCLLEETDDDRLVKMHDVIRDMALWIVSNEGRDKNKWVVQTVSHWHAAEQILSVGTEIAELPAISGEQTKLTVLILQDNHLSQSSVTGLCSFISLQYLDLSRNWLKTFPTEVCNLMNLYYLNLSDNKIKYLPEELGSLFKLEYLLLRSNPIREMPETILSKLSRLQVADFCSFQLEQPSTFEPPFGVLKCMRNLKALGITINMIKYFNMICKTDLPVRSLCVIILTKYLDEWKGFAFSDSFFGNDLIQKNLSELYIFTHEEQIVFESNVPHRSSNLEKLYICGHHFTDIFWKGVESQDLFQNLKRLDLITCISLTNISWIQRFPYLEDLIVFSCEALQQIIGSVSNSDNLPNADEKERKPLSQPCLKRFALIKLKRLTSICHSSFHFPSLECLQVLGCPQLMTLPFTTVPCNLKAVHCDQEWLEHLQWDDANVKHSFQPFFKVIPMVNEYLPQKFLHGLYAEWSYYRFEEGEFEEAEDGADQGLDS |
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| Function | Probable disease resistance protein At5g63020 [UniProtKB/Swiss-Prot:Q8RXS5] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsGoSa_12g0013630 | OsGoSa_12g0013630.01 | Chr12 | 18113351 | 18116921 | - | NAM | ||
| CDS seq | atggagatcattggcatcaagtgctgtggtgttgtcctgactcccttgataagcctcgcaaaacagcatgctgcctatttcttcaaagcccagaagttcgtgcgtgctctcaaaactgccaccgagcgtttaagggagagggttagcgatgttgagaccaaggtggagggtgctgcacgaaaaggtatgcagccaaggcatgaagttgaaggatggctgaagcgtgctgagcatgtatgtgtggagactgagacaatccaagcaaagtatgataagaggaccaagtgcatggggagtctgtccccttgtatctgtgtaaactacatgatagccaagagtgcagcagcaaattgtcaggctgtagagaagatatacagtgagggcatatttgaagaatatggtgtcatggtgccacaggcctgcactgaagtgcccataactgacataagcctaactggtacagatcggtatcgcaacctcgctgtcaagttcatcaaggatgaggctgtaagcaaggttgggttgtggggccctggaggtgtgggaaagacacatctgctctatcagatcaataacttgtttcacaaaaaccctgcttttgatgttgttattcgagttactgcttccaaaggttgctctgttgcaaaggttcaagactcaattgttggggaacagatgctgcagaagaagaatgacacagaatctcaggcagttatcatatatgaatttctcaaaagtaaaaattttcttatattattggatgatttgtgggaacatgttgatcttgataaggttgggattccaaacaaagttagctcaattggcaattacaaacaaaaattgttgctaacaacacgctctgaaagtgtttgtggccaaatgggtgtcaagaatgggcaaaggattaaagtagattgcctggatgaaacagatgcatggcatcttttcaaggaaaatgttggtactgaaattattgaaaatcacccccttgtacttccactggcaaaagaggttgcaaatgaacttgccggactgccgttagctcttattgtagttggcagggccatgtctaccaagaggcatccacgagaatggcagaattgcatcgactttcttcagcaatcacggcttaatgagattgaagggccagtttgcaacgaagaaagtgtgtttgctcgactgaaactcagttatgaatatctaagtgatactaatctgaaagattgtttcacatcatgcgccttatggcctgatgattatctgttagatagaaacaaactatctgagtactggatgggactgggtctagtagaggaggaggatattcaaagatgttacaacgcaggatatgcacgaattcgtgagttggtagacaagtgccttctggaggaaactgatgatgacagactagttaaaatgcatgatgtgatacgtgacatggcactatggattgtaagcaatgaaggaagggacaagaataagtgggttgtacaaacagtatctcactggcatgctgcagaacaaatattatcagtggggactgaaatagcagagctgcctgctatttctggggagcagaccaagcttaccgtgctgatacttcaggataatcatttaagtcaaagttcagtaactggcttgtgttcttttatctcccttcaataccttgatctttcacggaactggctcaaaacatttcctactgaagtttgcaaccttatgaacttgtactatctgaatttatcggataacaaaatcaagtacttacctgaagagctcggatccctttttaagctggagtacttgcttcttaggtcaaatcctatcagagaaatgcctgaaactattctttcaaagctctccagactgcaggttgcagacttttgctcattccagttggaacaaccttctacatttgaaccaccatttggtgttcttaaatgcatgagaaacttgaaagctcttggaatcaccataaatatgataaagtactttaacatgatctgcaaaaccgacttaccagtcaggtctctgtgtgttatcattttaacaaagtatctagatgaatggaaaggttttgcattttcagacagtttttttggaaatgatctgatacaaaagaatctgtctgagttatacatcttcacacatgaggaacaaatagtattcgaaagcaatgtgccacatcgaagttctaatcttgagaagctatacatatgtggtcatcacttcacagatatattttggaaaggagttgaaagccaggatctctttcagaacctgaaacggttggatcttataacttgcattagcttaacaaacatatcctggattcaacgttttccatatcttgaagatctgatagtatttagctgtgaggcactacagcaaataattggaagtgtttcgaacagtgacaatcttccaaatgctgatgaaaaagaaagaaaacctctttcacaaccttgcctcaaaaggtttgctttgatcaaattaaagagattgacttccatctgccattcctccttccactttccttcattagaatgcttgcaagtgctgggttgtcctcagctgatgacactacctttcacaactgtcccgtgtaatctgaaggctgttcattgtgaccaagaatggttggagcacttacagtgggacgatgctaatgtcaaacactccttccaacctttcttcaaagtgattcccatggtcaacgagtatctgccacagaaattcctccatggcttatatgctgaatggtcttactataggtttgaggaaggcgagtttgaagaggctgaagatggagcagatcaagggcttgatagttga
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| Protein seq | MEIIGIKCCGVVLTPLISLAKQHAAYFFKAQKFVRALKTATERLRERVSDVETKVEGAARKGMQPRHEVEGWLKRAEHVCVETETIQAKYDKRTKCMGSLSPCICVNYMIAKSAAANCQAVEKIYSEGIFEEYGVMVPQACTEVPITDISLTGTDRYRNLAVKFIKDEAVSKVGLWGPGGVGKTHLLYQINNLFHKNPAFDVVIRVTASKGCSVAKVQDSIVGEQMLQKKNDTESQAVIIYEFLKSKNFLILLDDLWEHVDLDKVGIPNKVSSIGNYKQKLLLTTRSESVCGQMGVKNGQRIKVDCLDETDAWHLFKENVGTEIIENHPLVLPLAKEVANELAGLPLALIVVGRAMSTKRHPREWQNCIDFLQQSRLNEIEGPVCNEESVFARLKLSYEYLSDTNLKDCFTSCALWPDDYLLDRNKLSEYWMGLGLVEEEDIQRCYNAGYARIRELVDKCLLEETDDDRLVKMHDVIRDMALWIVSNEGRDKNKWVVQTVSHWHAAEQILSVGTEIAELPAISGEQTKLTVLILQDNHLSQSSVTGLCSFISLQYLDLSRNWLKTFPTEVCNLMNLYYLNLSDNKIKYLPEELGSLFKLEYLLLRSNPIREMPETILSKLSRLQVADFCSFQLEQPSTFEPPFGVLKCMRNLKALGITINMIKYFNMICKTDLPVRSLCVIILTKYLDEWKGFAFSDSFFGNDLIQKNLSELYIFTHEEQIVFESNVPHRSSNLEKLYICGHHFTDIFWKGVESQDLFQNLKRLDLITCISLTNISWIQRFPYLEDLIVFSCEALQQIIGSVSNSDNLPNADEKERKPLSQPCLKRFALIKLKRLTSICHSSFHFPSLECLQVLGCPQLMTLPFTTVPCNLKAVHCDQEWLEHLQWDDANVKHSFQPFFKVIPMVNEYLPQKFLHGLYAEWSYYRFEEGEFEEAEDGADQGLDS
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 6.231174 | 2.227257 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_12g0205500 | SBH | 0.733539 | 0.490773 | 0.492659 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os12g30760 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os12g0205500 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_12g0013740 | SBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_12g0013920 | SBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_12g0013790 | SBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_12g0013620 | SBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_12g0013270 | SBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_12G0252500 | SBH | 0 | 0 | 0.0308585 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_12g0013440 | SBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_12G0275100 | SBH | 0.0117115 | 0 | 0.006054 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_12g0013430 | RBH | 0.101333 | 0.042860 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_12g0013750 | SBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_12g0013600 | RBH | 0.000000 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_12g0013600 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_12g0013770 | RBH | 0.188432 | 1.262580 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_12G013510 | RBH | 0.342446 | 2.768850 | 1.051252 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_12g0013350 | RBH | 1.885347 | 4.100020 | 3.058818 |
