Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsGoSa_12g0008400 | OGI:12024650 | 16/16 | GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | Chr12:8393993-8396702 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | attcccagaaaaaaaaacaagaagaagaaattcctcaactctctcctcctcccacggatggatccccacgccggcgccgttgccagcggtgaatccgccggcgacgaggacgacggcagcggcgagcacgagacccacccgacgtcttccgcgccctccgccaacagcaggccccggaagcgctcgcgcctgaccgctgccgcagacgaatccacgaccgtcgacgactgctccgccggcggcagcggcgacggcggcggcggcggcggcgagtcggtgggcgcctggccctacgacgagagcgcagccagggacgagctcgtgacgctcatcgtctcccaggatcttcccgtcgggatcgccggcagtgcgtccttcgaggccatggtgcggcaatcgttctgcccccagttcgagcgaatcgacaatgctgtcaccatcagagacatcttggtgttccacgaggaccacgtggcgggattgaaggaggagttcaccggtggcaatctctccttcgccttgtcatgtgaaatgtgggggacttcgtatcataggatgagctatctctgtgtggctgctcactatgtcgatggggattacattctgaacaagagggtgattggattcaagcttatcgacggcgcgccgaccgcggaggcgatcgcgcggcgcatacttgatgttgctatggaatacggcattgagaatcggattgtttctgttactcttggggatggtttagcagatggtgaaaccatggatgcattggctcctcttcttgggtggtacaccggcggatttgttttcctgcagaggtgcattttcagcatcctcaatgacatcgttcgagctggtttgactgagatggctgggcctttggatgctattcgttccgcgattgcgtacgtttccagttcggaggcgaatttcaccgagtttgagaagtgctgcgtcgagcgaggccagaaggctaggaaactatggcctgattccaaagtaaggtgggattccacatatgacatgctcaaggaagtgcttccctacaaagttctgactgactttgtcaatggcagtatgcaacaagagtttctttctgagcacaattggtcccttctcagtatatttgacaagttcctcgcgaagttttataacgctgctaccaagttgtctgctgtttacagtcagacatcttccttaactttaatttacatctgtgacatggcagtattgtttcggtcttataggacagaccctgttttctctgccattctgaaaccaatggaagcagtgtttgtcaaatattttcaaagaattccacgcctctattgctatgctttgattttagatcctcggctaaaattacatggcctggaagtggccttgaagatgttaggtgaagccttaaacattgattattcaagcactttcacacaaattgctgatgaatttcttaaagtcctttccatgtatgaagagaagtttggcagcacactccgtccaccaccatcaccgccctcttcactggtctttagattattcgctgctagactgaaggagttggagctgaaggagttggagcttcaaaaggattcctcgccctcttcatcagtacaccaacgaaaagccaaaaacgagttcaacaagaaatacatcgaggctccatgctcgttgcgtctcaattctcatggacctgatcccaatattatcatgtggtggaaggacaacaaactgtttcatgttgtgttagctcaactagcaagggatgtccttgcgtctcctgtgtcgacagtctcttctgcagatgcattcaacatcaacggaagagtagttgaagatcaaagatcatgtctagcaccggacattttagaggcaatcatgtgcctgaaagactttgaaaatgctgctactcaagaacaggatagaaaggtgaatgctgagtttgctagtgtggtatgccttgatatgtaaccaagcaatccaatgtgttttacctcctatggttaccaactaacatctgcttagttaaatgaagacatcgttatgggctttagttacttgagaactgcatggtaaatgctgagtcttctactgatcttcgaggtgatagtaaatgcattctctgcatataactcaacttttctagcttcagtggcttcagttccaattttaggggcagtccaagtatcattgaggttaatttggtccccacaaaatcggagcagtttatcacattgaaagccatagatttccatggaaatccatctggttccatcactggtgctaggtaatacgagactgttagttggtttaacacagtggcatgcattacagaacaagggagcatgcatttcatgacagaaaattagatggctttttgtgaagtgcatgtacaccgttgaaaaacgcatagaacgtttggtaagtgaattgttgtgaatgcgttgctgccaacctacagagtacatactggtatgtatttgacaaacttgaatgaaccaagtacgttgatcaaaatcttgccacattaattagaagattgcaattattcatgtcatggaagattctgggaaccaaataaataggagaccgggtttcatgttggtagaagctagaagcctagaacatgtaccatttcctttttgttttgcaatgctgttgcccttactactgacatctttccatgtcctactttaggtttcggagacattag
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| CDS seq | atggatccccacgccggcgccgttgccagcggtgaatccgccggcgacgaggacgacggcagcggcgagcacgagacccacccgacgtcttccgcgccctccgccaacagcaggccccggaagcgctcgcgcctgaccgctgccgcagacgaatccacgaccgtcgacgactgctccgccggcggcagcggcgacggcggcggcggcggcggcgagtcggtgggcgcctggccctacgacgagagcgcagccagggacgagctcgtgacgctcatcgtctcccaggatcttcccgtcgggatcgccggcagtgcgtccttcgaggccatggtgcggcaatcgttctgcccccagttcgagcgaatcgacaatgctgtcaccatcagagacatcttggtgttccacgaggaccacgtggcgggattgaaggaggagttcaccggtggcaatctctccttcgccttgtcatgtgaaatgtgggggacttcgtatcataggatgagctatctctgtgtggctgctcactatgtcgatggggattacattctgaacaagagggtgattggattcaagcttatcgacggcgcgccgaccgcggaggcgatcgcgcggcgcatacttgatgttgctatggaatacggcattgagaatcggattgtttctgttactcttggggatggtttagcagatggtgaaaccatggatgcattggctcctcttcttgggtggtacaccggcggatttgttttcctgcagaggtgcattttcagcatcctcaatgacatcgttcgagctggtttgactgagatggctgggcctttggatgctattcgttccgcgattgcgtacgtttccagttcggaggcgaatttcaccgagtttgagaagtgctgcgtcgagcgaggccagaaggctaggaaactatggcctgattccaaagtaaggtgggattccacatatgacatgctcaaggaagtgcttccctacaaagttctgactgactttgtcaatggcagtatgcaacaagagtttctttctgagcacaattggtcccttctcagtatatttgacaagttcctcgcgaagttttataacgctgctaccaagttgtctgctgtttacagtcagacatcttccttaactttaatttacatctgtgacatggcagtattgtttcggtcttataggacagaccctgttttctctgccattctgaaaccaatggaagcagtgtttgtcaaatattttcaaagaattccacgcctctattgctatgctttgattttagatcctcggctaaaattacatggcctggaagtggccttgaagatgttaggtgaagccttaaacattgattattcaagcactttcacacaaattgctgatgaatttcttaaagtcctttccatcttcagtggcttcagttccaattttaggggcagtccaagtatcattgaggttaatttggtccccacaaaatcggagcagtttatcacattgaaagccatagatttccatggaaatccatctggttccatcactggtgctaggtttcggagacattag
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| Protein seq | MDPHAGAVASGESAGDEDDGSGEHETHPTSSAPSANSRPRKRSRLTAAADESTTVDDCSAGGSGDGGGGGGESVGAWPYDESAARDELVTLIVSQDLPVGIAGSASFEAMVRQSFCPQFERIDNAVTIRDILVFHEDHVAGLKEEFTGGNLSFALSCEMWGTSYHRMSYLCVAAHYVDGDYILNKRVIGFKLIDGAPTAEAIARRILDVAMEYGIENRIVSVTLGDGLADGETMDALAPLLGWYTGGFVFLQRCIFSILNDIVRAGLTEMAGPLDAIRSAIAYVSSSEANFTEFEKCCVERGQKARKLWPDSKVRWDSTYDMLKEVLPYKVLTDFVNGSMQQEFLSEHNWSLLSIFDKFLAKFYNAATKLSAVYSQTSSLTLIYICDMAVLFRSYRTDPVFSAILKPMEAVFVKYFQRIPRLYCYALILDPRLKLHGLEVALKMLGEALNIDYSSTFTQIADEFLKVLSIFSGFSSNFRGSPSIIEVNLVPTKSEQFITLKAIDFHGNPSGSITGARFRRH |
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| Function | Putative AC transposase [UniProtKB/Swiss-Prot:P08770] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsGoSa_12g0008400 | OsGoSa_12g0008400.01 | Chr12 | 8393993 | 8396702 | + | NAM | ||
| CDS seq | atggatccccacgccggcgccgttgccagcggtgaatccgccggcgacgaggacgacggcagcggcgagcacgagacccacccgacgtcttccgcgccctccgccaacagcaggccccggaagcgctcgcgcctgaccgctgccgcagacgaatccacgaccgtcgacgactgctccgccggcggcagcggcgacggcggcggcggcggcggcgagtcggtgggcgcctggccctacgacgagagcgcagccagggacgagctcgtgacgctcatcgtctcccaggatcttcccgtcgggatcgccggcagtgcgtccttcgaggccatggtgcggcaatcgttctgcccccagttcgagcgaatcgacaatgctgtcaccatcagagacatcttggtgttccacgaggaccacgtggcgggattgaaggaggagttcaccggtggcaatctctccttcgccttgtcatgtgaaatgtgggggacttcgtatcataggatgagctatctctgtgtggctgctcactatgtcgatggggattacattctgaacaagagggtgattggattcaagcttatcgacggcgcgccgaccgcggaggcgatcgcgcggcgcatacttgatgttgctatggaatacggcattgagaatcggattgtttctgttactcttggggatggtttagcagatggtgaaaccatggatgcattggctcctcttcttgggtggtacaccggcggatttgttttcctgcagaggtgcattttcagcatcctcaatgacatcgttcgagctggtttgactgagatggctgggcctttggatgctattcgttccgcgattgcgtacgtttccagttcggaggcgaatttcaccgagtttgagaagtgctgcgtcgagcgaggccagaaggctaggaaactatggcctgattccaaagtaaggtgggattccacatatgacatgctcaaggaagtgcttccctacaaagttctgactgactttgtcaatggcagtatgcaacaagagtttctttctgagcacaattggtcccttctcagtatatttgacaagttcctcgcgaagttttataacgctgctaccaagttgtctgctgtttacagtcagacatcttccttaactttaatttacatctgtgacatggcagtattgtttcggtcttataggacagaccctgttttctctgccattctgaaaccaatggaagcagtgtttgtcaaatattttcaaagaattccacgcctctattgctatgctttgattttagatcctcggctaaaattacatggcctggaagtggccttgaagatgttaggtgaagccttaaacattgattattcaagcactttcacacaaattgctgatgaatttcttaaagtcctttccatcttcagtggcttcagttccaattttaggggcagtccaagtatcattgaggttaatttggtccccacaaaatcggagcagtttatcacattgaaagccatagatttccatggaaatccatctggttccatcactggtgctaggtttcggagacattag
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| Protein seq | MDPHAGAVASGESAGDEDDGSGEHETHPTSSAPSANSRPRKRSRLTAAADESTTVDDCSAGGSGDGGGGGGESVGAWPYDESAARDELVTLIVSQDLPVGIAGSASFEAMVRQSFCPQFERIDNAVTIRDILVFHEDHVAGLKEEFTGGNLSFALSCEMWGTSYHRMSYLCVAAHYVDGDYILNKRVIGFKLIDGAPTAEAIARRILDVAMEYGIENRIVSVTLGDGLADGETMDALAPLLGWYTGGFVFLQRCIFSILNDIVRAGLTEMAGPLDAIRSAIAYVSSSEANFTEFEKCCVERGQKARKLWPDSKVRWDSTYDMLKEVLPYKVLTDFVNGSMQQEFLSEHNWSLLSIFDKFLAKFYNAATKLSAVYSQTSSLTLIYICDMAVLFRSYRTDPVFSAILKPMEAVFVKYFQRIPRLYCYALILDPRLKLHGLEVALKMLGEALNIDYSSTFTQIADEFLKVLSIFSGFSSNFRGSPSIIEVNLVPTKSEQFITLKAIDFHGNPSGSITGARFRRH
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_12g0262100 | RBH | 0.230694 | 0.245134 | 0.586166 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os12g16130 | RBH | 0.150894 | 0.159469 | 0.145945 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os12g0262100 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_12g0008530 | RBH | 0.044848 | 2.387684 | 0.868566 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_12g0008640 | RBH | 0.0 | 0.512588 | 0.691864 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_12g0008670 | RBH | 0.0 | 1.756868 | 1.536841 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_12g0008480 | RBH | 0.0 | 0.034305 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_12g0008390 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_12G0127200 | RBH | 1.201379 | 2.476383 | 6.3714505 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_12g0008300 | RBH | 0.0 | 0.077863 | 0.149173 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_12G0137300 | RBH | 0.084804 | 0.016342 | 3.0147745 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_12g0008210 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_12g0008530 | RBH | 0.107043 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_12g0008400 | RBH | 0.0 | 0.0 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_12g0008580 | RBH | 0.0 | 1.089067 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_12G008420 | RBH | 0.0 | 0.0 | 0.195616 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_12g0008270 | RBH | 0.225771 | 0.0 | 2.494105 |
