Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsGoSa_12g0007060 | OGI:12017330 | 16/16 | GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | Chr12:6063826-6067277 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ggcaagactgatactgaagtagcagaaaataaaattaaagagcatatagtcatataataacatttttcatttaccatcggtggaaactcttttcatcttggtgcatatgctgttctccactggtcaattcaacatggaaattgcatgtcaagcatgacaccatgcaatggtggtaatttgcatcgcatctccaagagaagacaaaaatatatacattcagattggagatcgagagttgccaagaagctggcctagaagattttaggttcctgtaaaggcaaagaaaatgcatcattttttgcatggcttgactctgataagaaagcatttgatatggtaccaatgcacatcacacaatgttttatgatggttgtcatctcaatttgagtctaagagatctgtgactctgcactctttttagggtgctttttttgggtatgatcaggatcataactaaatctaattctactgattccagtaactaaatacaaataattgcttgcatatgtcctctcaattgtaaaaattcaccaattatttattcaaatctaaagcacaactaaaaaccattattaagagtgaagacgcatggtataaagggaaatacatctatataatcaggttcaatcttatattctacaatttaatcctgttaaaacatctacaattcaattctagatcctaagcctgatgatgtatcttctaccaataacatgagaagcaagtttcataaagcaatattgcgttcatttcaaaaggttggcatgacagtttgacatctgcttacattcctttgggttaggaagtgttacaatcagtgaatgattctgactatgcttcaggagtaattttgaagaatcaagcaaaacaataaacgtcagtaacccaatatcattacaaaccttgcacttctgatgccaaatacctttaatataatctacacaacgtttaatataatttagattaacataccttttgtccagaaatctggcaaagattgatcattcatggtatcatctattgtgatatcctcattgatgtttatagcatccctttgtaatcctctgccaggatttctttcataggcaatgatttcttcatatgccttctgtaagatgtcttttgctgctttatacacagcctttgatgcagatcctttgtcagcacatctgatggcatcagcgcacaggacattgtaacggcttgtaatggattgacaagtagcatctttgtggttattgctgttgtcttccaacaattcatcatgtctggcattcctcgtccaacgtttcaaaaagtaatcaggtggaagtgtgcgtggatcaactattatgaatactccaagaatatgacggcataaaatacctgagaacttaaagtacttgcaactacactttgccatcttactggaagcattataagtcacacagaatgtgtctgatggatcatcttcatcttttgtgatgctgaatttgcttactctgccttcttcagttttctgaatgatataacccaaggattctgtgaattcttcttgaaacctactgaagactgcttttgtgtaagtgcttgctgcctgtttctctattggcgatgcagtccttgtagttgcctcatttaaccgagtgtctatatctgcttgtgcttcattttcatatcgacttgtcatggtcgaatcaaattgattaaggaaaacctccagcgttgtctttgtattgaagtatttcttataaaagtcattcatggtctccaatttttgtgtgggtgatatttctgcaaagaatgtacccatcatgtacaaaggaacccacttttggcgtatattgtaaattgcttgaagccatgcatgttttctcaagtcatatttctcgaggattgacatccatgatgtttcaaaagtagagatagtttcagattcaatcacacagctttctatctcatccctcaggtccggatgctcagagtatgcatgacctaatttttgtttggttctactcaaaatataccacttgcagaagcggtgacaggtatctggaaaaacctttccaatcgcagccttcatagccctattttggtcagtgactaacgagcctggtgccttcccacccattgctgctaaccaagtttcaaacagccaagaaaatgaggattcagtttcttccataagaaatgcacaaccaaaaattactgtctgaagatgatggttgacacctgagaaggtaacaaagggcatcatatacttggtcttcttatatgacgtgtcaaatgtgacagcatccccaaaatgccgataggcttctttagctctagaatcagcccaaaaaacattcatcagacaaccattcttgtcgacctgtatggcatgggaacacctggggtcattggcttgcttcttcttcagataatcaagaagaccctggccgtcaccggtctccccaaggaaattctgcctaagagaggcggtcccgtcagagcccatcgcagcgatcttgttggacacatcaggcaatcctctggcacgaagatacccgtatctggtgccgatgccaaggctatggttgtgagccttctcaagcttggagacaacccaatggtccttgtccctgaccacctccatcatggcattgcaaccttcccgcatcgatgccctctcacgcttactggtagcctcgccggacgtcgatggctgcttcttcttgtgcgccccttccctcgagcaaacgaacctcttcatgattacaacctcctccatgcccttcgatcgccgggaccggccgacgcggaaggggaacccgagccacctggcgtactcattgtagaacatctttgccgcctcgtcggactcgaacgtcatgccgagcaccggctccttgggatcattctcagcatcagcatcaccatcaccatcaccatcaccaggagcaaaatctctcatcacatcctgctccgccgccgcggccgccgctgcagcggcgtcgtcgtctacatcatctggagctccttcaagaatcagggcgtcattctggcaagagcgggagttggtgtccagggacatgaggcagtcgacatagtcggcaatcagctcatcgccatcccccctctcatcatcctccatcgtctgtcacagcggttgaaaacctagtccattggaggggggcaagaaatcaatccatgctcgattgggggatctccaaacaaccaagtgtgtctgcggcggagggagggagggagggagggaggaagaatggagggataccttggattcgattcgattcgagccgagatggaaggaggccgggacctgctcgccggccgagcgcgcggggcagggggaggaggatgggggcgcgagcgagaggaggccgtacacaccgcgcgcgccgccggggctgctcgccggcggcgagcgcgagggagaaggcgggggaagggagggagagaggaggggtgag
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| CDS seq | atggaggatgatgagaggggggatggcgatgagctgattgccgactatgtcgactgcctcatgtccctggacaccaactcccgctcttgccagaatgacgccctgattcttgaaggagctccagatgatgtagacgacgacgccgctgcagcggcggccgcggcggcggagcaggatgtgatgagagattttgctcctggtgatggtgatggtgatggtgatgctgatgctgagaatgatcccaaggagccggtgctcggcatgacgttcgagtccgacgaggcggcaaagatgttctacaatgagtacgccaggtggctcgggttccccttccgcgtcggccggtcccggcgatcgaagggcatggaggaggttgtaatcatgaagaggttcgtttgctcgagggaaggggcgcacaagaagaagcagccatcgacgtccggcgaggctaccagtaagcgtgagagggcatcgatgcgggaaggttgcaatgccatgatggaggtggtcagggacaaggaccattgggttgtctccaagcttgagaaggctcacaaccatagccttggcatcggcaccagatacggggatgagatagaaagctgtgtgattgaatctgaaactatctctacttttgaaacatcatggatgtcaatcctcgagaaatatgacttgagaaaacatgcatggcttcaagcaatttacaatatacgccaaaagtgggttcctttgtacatgatgggtacattctttgcagaaatatcacccacacaaaaattggagaccatgaatgacttttataagaaatacttcaatacaaagacaacgctggaggttttccttaatcaatttgattcgaccatgacaagtcgatatgaaaatgaagcacaagcagatatagacactcggttaaatgaggcaactacaaggactgcatcgccaatagagaaacaggcagcaagcacttacacaaaagcagtcttcagtaggtttcaagaagaattcacagaatccttgggttatatcattcagaaaactgaagaaggcagagtaagcaaattcagcatcacaaaagatgaagatgatccatcagacacattctgtgtgacttataatgcttccagtaagatggcaaagtgtagttgcaagtactttaagttctcaggtattttatgccgtcatattcttggagtattcataatagttgatccacgcacacttccacctgattactttttgaaacgttggacgaggaatgccagacatgatgaattgttggaagacaacagcaataaccacaaagatgctacttgtcaatccattacaagccgttacaatgtcctgtgcgctgatgccatcagatgtgctgacaaaggatctgcatcaaaggctgtgtataaagcagcaaaagacatcttacagaaggcatatgaagaaatcattgcctatgaaagaaatcctggcagaggattacaaagggatgctataaacatcaatgaggatatcacaatagatgataccatgaatgatcaatctttgccagatttctggacaaaaggaacctaa
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| Protein seq | MEDDERGDGDELIADYVDCLMSLDTNSRSCQNDALILEGAPDDVDDDAAAAAAAAAEQDVMRDFAPGDGDGDGDADAENDPKEPVLGMTFESDEAAKMFYNEYARWLGFPFRVGRSRRSKGMEEVVIMKRFVCSREGAHKKKQPSTSGEATSKRERASMREGCNAMMEVVRDKDHWVVSKLEKAHNHSLGIGTRYGDEIESCVIESETISTFETSWMSILEKYDLRKHAWLQAIYNIRQKWVPLYMMGTFFAEISPTQKLETMNDFYKKYFNTKTTLEVFLNQFDSTMTSRYENEAQADIDTRLNEATTRTASPIEKQAASTYTKAVFSRFQEEFTESLGYIIQKTEEGRVSKFSITKDEDDPSDTFCVTYNASSKMAKCSCKYFKFSGILCRHILGVFIIVDPRTLPPDYFLKRWTRNARHDELLEDNSNNHKDATCQSITSRYNVLCADAIRCADKGSASKAVYKAAKDILQKAYEEIIAYERNPGRGLQRDAININEDITIDDTMNDQSLPDFWTKGT |
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| Function | Protein FAR1-RELATED SEQUENCE 3 [UniProtKB/Swiss-Prot:Q9ZVC9] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsGoSa_12g0007060 | OsGoSa_12g0007060.01 | Chr12 | 6063826 | 6067277 | - | NAM | ||
| CDS seq | atggaggatgatgagaggggggatggcgatgagctgattgccgactatgtcgactgcctcatgtccctggacaccaactcccgctcttgccagaatgacgccctgattcttgaaggagctccagatgatgtagacgacgacgccgctgcagcggcggccgcggcggcggagcaggatgtgatgagagattttgctcctggtgatggtgatggtgatggtgatgctgatgctgagaatgatcccaaggagccggtgctcggcatgacgttcgagtccgacgaggcggcaaagatgttctacaatgagtacgccaggtggctcgggttccccttccgcgtcggccggtcccggcgatcgaagggcatggaggaggttgtaatcatgaagaggttcgtttgctcgagggaaggggcgcacaagaagaagcagccatcgacgtccggcgaggctaccagtaagcgtgagagggcatcgatgcgggaaggttgcaatgccatgatggaggtggtcagggacaaggaccattgggttgtctccaagcttgagaaggctcacaaccatagccttggcatcggcaccagatacggggatgagatagaaagctgtgtgattgaatctgaaactatctctacttttgaaacatcatggatgtcaatcctcgagaaatatgacttgagaaaacatgcatggcttcaagcaatttacaatatacgccaaaagtgggttcctttgtacatgatgggtacattctttgcagaaatatcacccacacaaaaattggagaccatgaatgacttttataagaaatacttcaatacaaagacaacgctggaggttttccttaatcaatttgattcgaccatgacaagtcgatatgaaaatgaagcacaagcagatatagacactcggttaaatgaggcaactacaaggactgcatcgccaatagagaaacaggcagcaagcacttacacaaaagcagtcttcagtaggtttcaagaagaattcacagaatccttgggttatatcattcagaaaactgaagaaggcagagtaagcaaattcagcatcacaaaagatgaagatgatccatcagacacattctgtgtgacttataatgcttccagtaagatggcaaagtgtagttgcaagtactttaagttctcaggtattttatgccgtcatattcttggagtattcataatagttgatccacgcacacttccacctgattactttttgaaacgttggacgaggaatgccagacatgatgaattgttggaagacaacagcaataaccacaaagatgctacttgtcaatccattacaagccgttacaatgtcctgtgcgctgatgccatcagatgtgctgacaaaggatctgcatcaaaggctgtgtataaagcagcaaaagacatcttacagaaggcatatgaagaaatcattgcctatgaaagaaatcctggcagaggattacaaagggatgctataaacatcaatgaggatatcacaatagatgataccatgaatgatcaatctttgccagatttctggacaaaaggaacctaa
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| Protein seq | MEDDERGDGDELIADYVDCLMSLDTNSRSCQNDALILEGAPDDVDDDAAAAAAAAAEQDVMRDFAPGDGDGDGDADAENDPKEPVLGMTFESDEAAKMFYNEYARWLGFPFRVGRSRRSKGMEEVVIMKRFVCSREGAHKKKQPSTSGEATSKRERASMREGCNAMMEVVRDKDHWVVSKLEKAHNHSLGIGTRYGDEIESCVIESETISTFETSWMSILEKYDLRKHAWLQAIYNIRQKWVPLYMMGTFFAEISPTQKLETMNDFYKKYFNTKTTLEVFLNQFDSTMTSRYENEAQADIDTRLNEATTRTASPIEKQAASTYTKAVFSRFQEEFTESLGYIIQKTEEGRVSKFSITKDEDDPSDTFCVTYNASSKMAKCSCKYFKFSGILCRHILGVFIIVDPRTLPPDYFLKRWTRNARHDELLEDNSNNHKDATCQSITSRYNVLCADAIRCADKGSASKAVYKAAKDILQKAYEEIIAYERNPGRGLQRDAININEDITIDDTMNDQSLPDFWTKGT
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 1.340411 | 14.404764 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_12g0225300 | RBH | 0.362048 | 0.743072 | 1.648821 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os12g12380 | RBH | 0.244836 | 0.499778 | 0.424439 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os12g0225300 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_12g0007200 | RBH | 0.286627 | 8.406796 | 2.365898 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_12g0007290 | RBH | 0.200655 | 1.038319 | 1.487426 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_12g0007300 | RBH | 0.961523 | 3.280845 | 1.908670 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_12g0007310 | RBH | 0.066891 | 0.228599 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_12g0007070 | RBH | 2.743923 | 4.787100 | 7.035885 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_12G0094800 | RBH | 2.637252 | 4.293466 | 4.7998755 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_12g0007040 | RBH | 0.198044 | 0.146417 | 0.830032 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_12G0099100 | RBH | 3.212896 | 4.6106415 | 10.1059925 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_12g0006920 | RBH | 0.191253 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_12g0007210 | RBH | 0.110709 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_12g0007140 | RBH | 0.197286 | 0.0 | 0.174959 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_12g0007070 | RBH | 0.197781 | 3.866743 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_12G007080 | RBH | 1.134924 | 1.645924 | 1.395743 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_12g0007070 | RBH | 1.185344 | 9.474233 | 2.350250 |
