Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsGoSa_11g0022390 | OGI:11074310 | 16/16 | GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | Chr11:29002648-29005342 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ttacaaccttgcaatataatgaatatatatacacgcggcagtgaacttgcgattattaattcttaccagaaccggccagatagaaatatgtaagtaggtcttcatttaattattctttccacattctgatctccttctactgtgatgaagcaacgtatatagatcgatcgcgtggtaaggggaacacgcacttcatgagatcttgagctccctcggacttacttgaggaattcttgagctccctcttggacttgattgaattcgattgaaccccggatgatgtccggagtgatcttcctcgtgctgttgcagttccagtcaaccttctccttcgtaggagctgctgcatcggcggccttgaagcgaagtatggccgtgttattgatcccagcaatgtcgtcgggggagatcgtcaccaacgtcttcgtcttgttcaagttccacacaatcttctccagcttgggagctgcacgggctttgatcaacaaggccgtcttatcagagacatgatcaagcaggaggagcctcagctccccgaactccccctcctcgagggtgacctcgctttcgatgtatgatttgcgaagcagcctgaggcagcgcaagctcttcagcttgccgaggatccgcagaccgtcgtcgcgcagtagggtgtaacgtagagtgatcttggaaagcgcttggagcttttcgttgatccatgtagggagcttgtagcctctcttgtcgccgccatttcctcccttgaagaagcacttgaggtctaagctctcaagtttactgggagctaggatttcttcttgtgaatggtcaagagtcacgaacacgtcgtcgccggccatgtgctccgcagccggcggtggcggtggctccgtgatccagactgacagtgagcgcagggtatctctccgcttggagattgcttcaagcaaatgagtgatgttaccttggctgccgtcgaggacgactcccaacttcctcagctgctctagagacccaatccgtgcaaggtcggcttggccgtccttaatccggacatggcgcaacgtctccgtcttcttcccgatcctgtgaggtaccagcacggtggagcctgactcatttttcttgccttcgccaccgccgtcggtgctgatgttgtcgccggcaaggagatgcttcaggttgtggaggtagatgcgcctcatggcggtggccggcatgttttcggtgtcccggatgtcgagcgtctccagctgccacaggtcctccatcttcttgggcagactggaaacgtcggtgttccggaggctcagatacttgagggaggtcaccttgcagatactcttgaggtggctcttctccaatctctggcagccccctagatctatcacgttcagtcgatactcttcaggtaactccttgaggagcttcaccatcccatccatgggattcagcggctgctgctgctgctgcagcggttgttgtttctcttctgctgatgcagttgcaggaaaggtctgtcgaaccatatgcctgattttgagctgacgctgaaggtgggtaggcaggtcaaccacaaaattttcgctcttggagatgtcggggatgaatttcttgactgcttcatcgacgacgcagctcttgagattcaagctgcatgtaccaacagctacaccatcatcttgaggaggaggaggagcaggaagaagaaagcctcgaaagacgagctccttgaagcagacttcgccggcttcttccatggtggttgtaagaggcggctcgacgaccctgaggggcacgaggccctcggcgacccatcgcctgaccaagcacgccctgctgattttatcttcctctcccatggtaaccaggtactgcaggcagctcttgcagtgcgtgggcagcttgctgtagcagaaaatcatcaccaatttggccacatctgctcctttaggttcaagcttcttggataaatcttccaattcttctacggtaccgtagggataggcatacagagcacgaagcagcatcttcatgatggccacatgatccccctcgatctcgacgcatttgttcaggatgtcctctaggtgtttgcgagcaatagcatcatgtccaagactatgagggagcttatcgatcactcctctgaaagattcagctgaaacatcttcaatggcacgtaggaattcgtccttcttctcctcagccttgctgtctcggaggaccagcaacagcgactcctccgaattgtgttgttcagggagcttgacgtcgtagcgcaggcgcctctcgccgacctcgcgcacgcggtccttgagcttgtggatcttgctggcgaggcggtggcgggccggaatcgtgcggaggcgcttggggatgtggcggagccacggccagaggacgtcctccggcgggatgaggtcacgcatgtagaggctgatgcagtcgtcggcgacgtaggtgacgtcgcggacctgcttcatccaggcgcggagctggtcgttgtgcggcgtcttggacttggtgaggtggaggaggaagccgttcatgctgtacatctcgtccctgatgaactggatgtcgccctccacgcctcccagcagcttcgcctcgtccttcaccaccttcgacaacacacccagcagcgagtccaccgcgccgttcgtcaggtgcgccattgtcgtagttgatctttcttctatgtactact
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| CDS seq | atggcgcacctgacgaacggcgcggtggactcgctgctgggtgtgttgtcgaaggtggtgaaggacgaggcgaagctgctgggaggcgtggagggcgacatccagttcatcagggacgagatgtacagcatgaacggcttcctcctccacctcaccaagtccaagacgccgcacaacgaccagctccgcgcctggatgaagcaggtccgcgacgtcacctacgtcgccgacgactgcatcagcctctacatgcgtgacctcatcccgccggaggacgtcctctggccgtggctccgccacatccccaagcgcctccgcacgattccggcccgccaccgcctcgccagcaagatccacaagctcaaggaccgcgtgcgcgaggtcggcgagaggcgcctgcgctacgacatgctgcttcgtgctctgtatgcctatccctacggtaccgtagaagaattggaagatttatccaagaagcttgaacctaaaggagcagatgtggccaaattggtgatgattttctgctacagcaagctgcccacgcactgcaagagctgcctgcagtacctggttaccatgggagaggaagataaaatcagcagggcgtgcttggtcaggcgatgggtcgccgagggcctcgtgcccctcagggtcgtcgagccgcctcttacaaccaccatggaagaagccggcgaagtctgcttcaaggagctcgtctttcgaggctttcttcttcctgctcctcctcctcctcaagatgatggtgtagctgttggtacatgcagcttgaatctcaagagctgcgtcgtcgatgaagcagtcaagaaattcatccccgacatctccaagagcgaaaattttagattggagaagagccacctcaagagtatctgcaaggtgacctccctcaagtatctgagcctccggaacaccgacgtttccagtctgcccaagaagatggaggacctgtggcagctggagacgctcgacatccgggacaccgaaaacatgccggccaccgccatgaggcgcatctacctccacaacctgaagcatctccttgccggcgacaacatcagcaccgacggcggtggcgaaggcaagaaaaatgagtcaggctccaccgtgctggtacctcacaggatcgggaagaagacggagacgttgcgccatgtccggattaaggacggccaagccgaccttgcacggattgggtctctagagcagctgaggaagttgggagtcgtcctcgacggcagccaaggtaacatcactcatttgcttgaagcaatctccaagcggagagataccctgcgctcactgtcagtctggatcacggagccaccgccaccgccggctgcggagcacatggccggcgacgacgtgttcgtgactcttgaccattcacaagaagaaatcctagctcccagtaaacttgagagcttagacctcaagtgcttcttcaagggaggaaatggcggcgacaagagaggctacaagctccctacatggatcaacgaaaagctccaagcgctttccaagatcactctacgttacaccctactgcgcgacgacggtctgcggatcctcggcaagctgaagagcttgcgctgcctcaggctgcttcgcaaatcatacatcgaaagcgaggtcaccctcgaggagggggagttcggggagctgaggctcctcctgcttgatcatgtctctgataagacggccttgttgatcaaagcccgtgcagctcccaagctggagaagattgtgtggaacttgaacaagacgaagacgttggtgacgatctcccccgacgacattgctgggatcaataacacggccatacttcgcttcaaggccgccgatgcagcagctcctacgaaggagaaggttgactggaactgcaacagcacgaggaagatcactccggacatcatccggggttcaatcgaattcaatcaagtccaagagggagctcaagaattcctcaagtaa
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| Protein seq | MAHLTNGAVDSLLGVLSKVVKDEAKLLGGVEGDIQFIRDEMYSMNGFLLHLTKSKTPHNDQLRAWMKQVRDVTYVADDCISLYMRDLIPPEDVLWPWLRHIPKRLRTIPARHRLASKIHKLKDRVREVGERRLRYDMLLRALYAYPYGTVEELEDLSKKLEPKGADVAKLVMIFCYSKLPTHCKSCLQYLVTMGEEDKISRACLVRRWVAEGLVPLRVVEPPLTTTMEEAGEVCFKELVFRGFLLPAPPPPQDDGVAVGTCSLNLKSCVVDEAVKKFIPDISKSENFRLEKSHLKSICKVTSLKYLSLRNTDVSSLPKKMEDLWQLETLDIRDTENMPATAMRRIYLHNLKHLLAGDNISTDGGGEGKKNESGSTVLVPHRIGKKTETLRHVRIKDGQADLARIGSLEQLRKLGVVLDGSQGNITHLLEAISKRRDTLRSLSVWITEPPPPPAAEHMAGDDVFVTLDHSQEEILAPSKLESLDLKCFFKGGNGGDKRGYKLPTWINEKLQALSKITLRYTLLRDDGLRILGKLKSLRCLRLLRKSYIESEVTLEEGEFGELRLLLLDHVSDKTALLIKARAAPKLEKIVWNLNKTKTLVTISPDDIAGINNTAILRFKAADAAAPTKEKVDWNCNSTRKITPDIIRGSIEFNQVQEGAQEFLK |
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| Function | Disease resistance protein Piks-2 [UniProtKB/Swiss-Prot:P0DO10] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsGoSa_11g0022390 | OsGoSa_11g0022390.01 | Chr11 | 29002648 | 29005342 | - | NAM | ||
| CDS seq | atggcgcacctgacgaacggcgcggtggactcgctgctgggtgtgttgtcgaaggtggtgaaggacgaggcgaagctgctgggaggcgtggagggcgacatccagttcatcagggacgagatgtacagcatgaacggcttcctcctccacctcaccaagtccaagacgccgcacaacgaccagctccgcgcctggatgaagcaggtccgcgacgtcacctacgtcgccgacgactgcatcagcctctacatgcgtgacctcatcccgccggaggacgtcctctggccgtggctccgccacatccccaagcgcctccgcacgattccggcccgccaccgcctcgccagcaagatccacaagctcaaggaccgcgtgcgcgaggtcggcgagaggcgcctgcgctacgacatgctgcttcgtgctctgtatgcctatccctacggtaccgtagaagaattggaagatttatccaagaagcttgaacctaaaggagcagatgtggccaaattggtgatgattttctgctacagcaagctgcccacgcactgcaagagctgcctgcagtacctggttaccatgggagaggaagataaaatcagcagggcgtgcttggtcaggcgatgggtcgccgagggcctcgtgcccctcagggtcgtcgagccgcctcttacaaccaccatggaagaagccggcgaagtctgcttcaaggagctcgtctttcgaggctttcttcttcctgctcctcctcctcctcaagatgatggtgtagctgttggtacatgcagcttgaatctcaagagctgcgtcgtcgatgaagcagtcaagaaattcatccccgacatctccaagagcgaaaattttagattggagaagagccacctcaagagtatctgcaaggtgacctccctcaagtatctgagcctccggaacaccgacgtttccagtctgcccaagaagatggaggacctgtggcagctggagacgctcgacatccgggacaccgaaaacatgccggccaccgccatgaggcgcatctacctccacaacctgaagcatctccttgccggcgacaacatcagcaccgacggcggtggcgaaggcaagaaaaatgagtcaggctccaccgtgctggtacctcacaggatcgggaagaagacggagacgttgcgccatgtccggattaaggacggccaagccgaccttgcacggattgggtctctagagcagctgaggaagttgggagtcgtcctcgacggcagccaaggtaacatcactcatttgcttgaagcaatctccaagcggagagataccctgcgctcactgtcagtctggatcacggagccaccgccaccgccggctgcggagcacatggccggcgacgacgtgttcgtgactcttgaccattcacaagaagaaatcctagctcccagtaaacttgagagcttagacctcaagtgcttcttcaagggaggaaatggcggcgacaagagaggctacaagctccctacatggatcaacgaaaagctccaagcgctttccaagatcactctacgttacaccctactgcgcgacgacggtctgcggatcctcggcaagctgaagagcttgcgctgcctcaggctgcttcgcaaatcatacatcgaaagcgaggtcaccctcgaggagggggagttcggggagctgaggctcctcctgcttgatcatgtctctgataagacggccttgttgatcaaagcccgtgcagctcccaagctggagaagattgtgtggaacttgaacaagacgaagacgttggtgacgatctcccccgacgacattgctgggatcaataacacggccatacttcgcttcaaggccgccgatgcagcagctcctacgaaggagaaggttgactggaactgcaacagcacgaggaagatcactccggacatcatccggggttcaatcgaattcaatcaagtccaagagggagctcaagaattcctcaagtaa
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| Protein seq | MAHLTNGAVDSLLGVLSKVVKDEAKLLGGVEGDIQFIRDEMYSMNGFLLHLTKSKTPHNDQLRAWMKQVRDVTYVADDCISLYMRDLIPPEDVLWPWLRHIPKRLRTIPARHRLASKIHKLKDRVREVGERRLRYDMLLRALYAYPYGTVEELEDLSKKLEPKGADVAKLVMIFCYSKLPTHCKSCLQYLVTMGEEDKISRACLVRRWVAEGLVPLRVVEPPLTTTMEEAGEVCFKELVFRGFLLPAPPPPQDDGVAVGTCSLNLKSCVVDEAVKKFIPDISKSENFRLEKSHLKSICKVTSLKYLSLRNTDVSSLPKKMEDLWQLETLDIRDTENMPATAMRRIYLHNLKHLLAGDNISTDGGGEGKKNESGSTVLVPHRIGKKTETLRHVRIKDGQADLARIGSLEQLRKLGVVLDGSQGNITHLLEAISKRRDTLRSLSVWITEPPPPPAAEHMAGDDVFVTLDHSQEEILAPSKLESLDLKCFFKGGNGGDKRGYKLPTWINEKLQALSKITLRYTLLRDDGLRILGKLKSLRCLRLLRKSYIESEVTLEEGEFGELRLLLLDHVSDKTALLIKARAAPKLEKIVWNLNKTKTLVTISPDDIAGINNTAILRFKAADAAAPTKEKVDWNCNSTRKITPDIIRGSIEFNQVQEGAQEFLK
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 2.097973 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_11g0654800 | RBH | 0.523233 | 0.178863 | 1.737872 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os11g43390 | RBH | 0.353206 | 0.120085 | 0.446564 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os11g0654800 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_11g0022410 | RBH | 0.483639 | 0.973701 | 2.055609 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_11g0022460 | SBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_11g0022150 | RBH | 0.606620 | 2.778005 | 2.816853 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_11g0021750 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_11g0022160 | SBH | 0.0 | 0.0 | 0.000000 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_11G0389900 | RBH | 2.9734625 | 3.2832875 | 0.3526345 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_11g0022920 | RBH | 0.127164 | 0.0 | 0.142496 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_11G0412600 | SBH | 0 | 0 | 0.104911 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_11g0022510 | SBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_11g0022690 | RBH | 0.176125 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_11g0022380 | SBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_11g0021870 | RBH | 0.239384 | 0.0 | 0.212986 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_11g0021900 | SBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_11G022250 | RBH | 0.0 | 0.0 | 0.000000 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_11g0022730 | RBH | 0.0 | 0.0 | 0.0 |
