Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsGoSa_11g0016020 | OGI:11058060 | 15/16 | GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | Chr11:21920956-21924338 | ||||||||
| Gene Symbol | OsFbox604, Os_F0232, OsFbox606, Os_F0155 | ||||||||||
| DNA seq | ctaagctaataataatcgagctaacgctccctcactctcaaagttagcctcatcaattagcagcgtgaggaggatacagatcaatacatggcggcgggagcagccgtgcacgtcgtcaggcggccgccgctacagatcagccggtggtgtacacggtgtggaagaggtccagcataggcttccagggcaccgatggcttctccgtctacgactccgccggcaagctcgcgttccgtgtcgacaaaactactaccaccgccgcaaagctttcgccggcgacctactgcttaaggatggccacggcccacggcacgcctcttctctccctcaagccacaggtcaatcatctttccattcacttcattaattcttttctagctactcgtatatcgctttagcagcagcctgtttactgatcgatcagatcatgagtttagtttactagtttggaatcatgtatcttaagatcagctcagcgtggaggagttcatcgcgcggtacatccagctagctgcacgcgccacacgtcagggacgccgtcgctgcactcgtgctcgacatgttcaccgcgcccatagtcgacgtggcgtgcgacctcggcgtgctgtcctacgtgttcatgtcgtccaccagcggcccagcaccatgctcgcgctcatgctgcacctccccgtgctccacgagcgcgtcaccgtggagttcgacgaggtggacggggatgtggacgtgcctggcctgccgcgcctctgccgccagcgtccatgccgtgccgtgcccgatggtggacaagaagagccccaactacacgtggttcgtgcgcctcggcgaccgcttcatggacgccacgggcatcatcgcgaacaccgccgaggcgccgacgagctcgaaccggccgggtcccctcgccaccatcgcggacagtcggtgcgtgcaggggcgaaccgcgcagccggtgtatcccatcggtcccgtgctgccccctgccagcttcgccagccagccgccccgcccgcctgcagtttcgctgaagtagagaagagatcaggagacgaaaggaaagagaataagaaaagaaagagaaagaggagatgacgctgacatgtggacccatggtatgacacagcgaaaccgggaaaaattaggtcaatactgcctcgggactttttgtgcacggtttatgatagttgaggggtagagatttccggtattgtgaattagggacctcagacaaactcgacgtaaaattgagggacgtcaggcgaccttattccaatttgttttctccatacaaacccctgcaaagccacgagcattgcactagggaattgaggcccagataagctagctcatcgggcttcagcactcagcccagcccaaaattccgtttcgccgaaacatcgatctgcgtatcgatcaagatcgacgacgatggcggccgccgtcgaccgcatctccgatctccccgacgacctcatccagcgcatcctccacttcgcgccggcgagggaggccgcgtccaccggcctcctctcctcccgctggcgctcgctctggcgctccaccggcgccgtcaacctcgctgtcctcgtccgccgccgcgacgacttcttctccctccgcgacgcgttcgtccgctccgcccacgctgcgctcgccgccgccggcggcggccacgtcaggaggctcaccatgcacgtggagacggagcgcctccccgtgcagctgacggccgacgcgttcctgcaccgcgacgcggaggactgggggaggaggcacgacgtggtcgccggcgtcgtgtcccacccggcggcgcgccgcgttgaggagctccgcgtcgccgccgtcaggtccgccgacgggccgtcgtccgacagggaggtcacggagatggaagaaggggagttccacctctccctcggcggcagcggcggcacccagccatcgacggagacgctccgcgtgctcgacctcaccgggtgcggcggcgtctccctccccgccggcgcggcgctcccgcggctgacgacgctgcggctgcggctgtgcgtcgtgcaggtcgagaacctgcagggcgtcgtcgactccgcgccggcgctcgccaccgtgcacctcgagtccgtcttcctcgccgggacgaaagaagaaggctgctgcgcccgcctccgcttccccgcggccaccgcgctcgtgctggccaagtgcaggggccacgggagccaccacaacggcgacgacgacgccagcgactgcgagggcgccatggagatcgacgcgccgaggctccgatcgttcaagtacacggggctgccccggcggttctcgctcatctcgccggcggcggacatggaacgcgcggacctgcacttcctccacgacgacgggcctcaccactaccgcgacaccaccgccgtgctccgcgcgcgcttctggcgcttcctccacaacttccgcggcgtcaagtccctcaagctgaaggtgacctacctcaaggcgatcgccgtcgccggcaacggcaaaggcatcctcctcccgccgctccatggcgtcgagcgcctcgacgtcgccgcgctgcacgacccggcgagcgagacgtccacggtggccatcgccaacctgctccgctgctgccccaacctccgcgacctcgtgctccgcctcagcacggtgccgccggattccaccaagaacggcggctactgccgcgacgtcctgcggaggcgctggcaggcggacctcgacgagtcggtccaccgcctcgcccgccggcgaggctggccgaagccgccgccgccgccgccgccgacgaagatctcctgcatgaaccaaagcctggacgatgccggcggtgacatccatggattgagcggccgatccttcgcctgcttgcgaagcttgttgacaagggttgggatccagttccggaacgacgagcgcagctggcttggcgtctcgctgatcaagttcttcgcggagaacgccatttgcctcgaggagatgcgcgtcgatggagggaacgagaggatgcgcgatcacatcaatcgtagggttgagagatggatcgttgagagtcacatgctttagagtgttaccgcttgagcggcgatgaaattaggagagatggattattgcaaacttgcaagtgactgaaattaatcaaggtcttgataagttgtgtgttgcaaataaaatgcgggtttttttttctagcttgttatcttcagtgataaaagaatgtcgttttaaattggtgtagtacaaaatatagattttggatataccaaataatcaaaatgacatatatagccaaatttgttatgaagaaagctttcataacattacgcttgtgtgtaattaactacattttagttcatgttaaagaattg
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| CDS seq | atgctcgcgctcatgctgcacctccccgtgctccacgagcgcgtcaccgtggagttcgacgaggtggacggggatgtggacgtgcctggcctgccgcgcctctgccgccagcgtccatgcccactcagcccagcccaaaattccgtttcgccgaaacatcgatctgcgtatcgatcaagatcgacgacgatggcggccgccgtcgaccgcatctccgatctccccgacgacctcatccagcgcatcctccacttcgcgccggcgagggaggccgcgtccaccggcctcctctcctcccgctggcgctcgctctggcgctccaccggcgccgtcaacctcgctgtcctcgtccgccgccgcgacgacttcttctccctccgcgacgcgttcgtccgctccgcccacgctgcgctcgccgccgccggcggcggccacgtcaggaggctcaccatgcacgtggagacggagcgcctccccgtgcagctgacggccgacgcgttcctgcaccgcgacgcggaggactgggggaggaggcacgacgtggtcgccggcgtcgtgtcccacccggcggcgcgccgcgttgaggagctccgcgtcgccgccgtcaggtccgccgacgggccgtcgtccgacagggaggtcacggagatggaagaaggggagttccacctctccctcggcggcagcggcggcacccagccatcgacggagacgctccgcgtgctcgacctcaccgggtgcggcggcgtctccctccccgccggcgcggcgctcccgcggctgacgacgctgcggctgcggctgtgcgtcgtgcaggtcgagaacctgcagggcgtcgtcgactccgcgccggcgctcgccaccgtgcacctcgagtccgtcttcctcgccgggacgaaagaagaaggctgctgcgcccgcctccgcttccccgcggccaccgcgctcgtgctggccaagtgcaggggccacgggagccaccacaacggcgacgacgacgccagcgactgcgagggcgccatggagatcgacgcgccgaggctccgatcgttcaagtacacggggctgccccggcggttctcgctcatctcgccggcggcggacatggaacgcgcggacctgcacttcctccacgacgacgggcctcaccactaccgcgacaccaccgccgtgctccgcgcgcgcttctggcgcttcctccacaacttccgcggcgtcaagtccctcaagctgaaggtgacctacctcaaggcgatcgccgtcgccggcaacggcaaaggcatcctcctcccgccgctccatggcgtcgagcgcctcgacgtcgccgcgctgcacgacccggcgagcgagacgtccacggtggccatcgccaacctgctccgctgctgccccaacctccgcgacctcgtgctccgcctcagcacggtgccgccggattccaccaagaacggcggctactgccgcgacgtcctgcggaggcgctggcaggcggacctcgacgagtcggtccaccgcctcgcccgccggcgaggctggccgaagccgccgccgccgccgccgccgacgaagatctcctgcatgaaccaaagcctggacgatgccggcggtgacatccatggattgagcggccgatccttcgcctgcttgcgaagcttgttgacaagggttgggatccagttccggaacgacgagcgcagctggcttggcgtctcgctgatcaagttcttcgcggagaacgccatttgcctcgaggagatgcgcgtcgatggagggaacgagaggatgcgcgatcacatcaatcgtagggttgagagatggatcgttgagagtcacatgctttag
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| Protein seq | MLALMLHLPVLHERVTVEFDEVDGDVDVPGLPRLCRQRPCPLSPAQNSVSPKHRSAYRSRSTTMAAAVDRISDLPDDLIQRILHFAPAREAASTGLLSSRWRSLWRSTGAVNLAVLVRRRDDFFSLRDAFVRSAHAALAAAGGGHVRRLTMHVETERLPVQLTADAFLHRDAEDWGRRHDVVAGVVSHPAARRVEELRVAAVRSADGPSSDREVTEMEEGEFHLSLGGSGGTQPSTETLRVLDLTGCGGVSLPAGAALPRLTTLRLRLCVVQVENLQGVVDSAPALATVHLESVFLAGTKEEGCCARLRFPAATALVLAKCRGHGSHHNGDDDASDCEGAMEIDAPRLRSFKYTGLPRRFSLISPAADMERADLHFLHDDGPHHYRDTTAVLRARFWRFLHNFRGVKSLKLKVTYLKAIAVAGNGKGILLPPLHGVERLDVAALHDPASETSTVAIANLLRCCPNLRDLVLRLSTVPPDSTKNGGYCRDVLRRRWQADLDESVHRLARRRGWPKPPPPPPPTKISCMNQSLDDAGGDIHGLSGRSFACLRSLLTRVGIQFRNDERSWLGVSLIKFFAENAICLEEMRVDGGNERMRDHINRRVERWIVESHML |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsGoSa_11g0016020 | OsGoSa_11g0016020.01 | Chr11 | 21920956 | 21924338 | + | NAM | ||
| CDS seq | atgctcgcgctcatgctgcacctccccgtgctccacgagcgcgtcaccgtggagttcgacgaggtggacggggatgtggacgtgcctggcctgccgcgcctctgccgccagcgtccatgcccactcagcccagcccaaaattccgtttcgccgaaacatcgatctgcgtatcgatcaagatcgacgacgatggcggccgccgtcgaccgcatctccgatctccccgacgacctcatccagcgcatcctccacttcgcgccggcgagggaggccgcgtccaccggcctcctctcctcccgctggcgctcgctctggcgctccaccggcgccgtcaacctcgctgtcctcgtccgccgccgcgacgacttcttctccctccgcgacgcgttcgtccgctccgcccacgctgcgctcgccgccgccggcggcggccacgtcaggaggctcaccatgcacgtggagacggagcgcctccccgtgcagctgacggccgacgcgttcctgcaccgcgacgcggaggactgggggaggaggcacgacgtggtcgccggcgtcgtgtcccacccggcggcgcgccgcgttgaggagctccgcgtcgccgccgtcaggtccgccgacgggccgtcgtccgacagggaggtcacggagatggaagaaggggagttccacctctccctcggcggcagcggcggcacccagccatcgacggagacgctccgcgtgctcgacctcaccgggtgcggcggcgtctccctccccgccggcgcggcgctcccgcggctgacgacgctgcggctgcggctgtgcgtcgtgcaggtcgagaacctgcagggcgtcgtcgactccgcgccggcgctcgccaccgtgcacctcgagtccgtcttcctcgccgggacgaaagaagaaggctgctgcgcccgcctccgcttccccgcggccaccgcgctcgtgctggccaagtgcaggggccacgggagccaccacaacggcgacgacgacgccagcgactgcgagggcgccatggagatcgacgcgccgaggctccgatcgttcaagtacacggggctgccccggcggttctcgctcatctcgccggcggcggacatggaacgcgcggacctgcacttcctccacgacgacgggcctcaccactaccgcgacaccaccgccgtgctccgcgcgcgcttctggcgcttcctccacaacttccgcggcgtcaagtccctcaagctgaaggtgacctacctcaaggcgatcgccgtcgccggcaacggcaaaggcatcctcctcccgccgctccatggcgtcgagcgcctcgacgtcgccgcgctgcacgacccggcgagcgagacgtccacggtggccatcgccaacctgctccgctgctgccccaacctccgcgacctcgtgctccgcctcagcacggtgccgccggattccaccaagaacggcggctactgccgcgacgtcctgcggaggcgctggcaggcggacctcgacgagtcggtccaccgcctcgcccgccggcgaggctggccgaagccgccgccgccgccgccgccgacgaagatctcctgcatgaaccaaagcctggacgatgccggcggtgacatccatggattgagcggccgatccttcgcctgcttgcgaagcttgttgacaagggttgggatccagttccggaacgacgagcgcagctggcttggcgtctcgctgatcaagttcttcgcggagaacgccatttgcctcgaggagatgcgcgtcgatggagggaacgagaggatgcgcgatcacatcaatcgtagggttgagagatggatcgttgagagtcacatgctttag
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| Protein seq | MLALMLHLPVLHERVTVEFDEVDGDVDVPGLPRLCRQRPCPLSPAQNSVSPKHRSAYRSRSTTMAAAVDRISDLPDDLIQRILHFAPAREAASTGLLSSRWRSLWRSTGAVNLAVLVRRRDDFFSLRDAFVRSAHAALAAAGGGHVRRLTMHVETERLPVQLTADAFLHRDAEDWGRRHDVVAGVVSHPAARRVEELRVAAVRSADGPSSDREVTEMEEGEFHLSLGGSGGTQPSTETLRVLDLTGCGGVSLPAGAALPRLTTLRLRLCVVQVENLQGVVDSAPALATVHLESVFLAGTKEEGCCARLRFPAATALVLAKCRGHGSHHNGDDDASDCEGAMEIDAPRLRSFKYTGLPRRFSLISPAADMERADLHFLHDDGPHHYRDTTAVLRARFWRFLHNFRGVKSLKLKVTYLKAIAVAGNGKGILLPPLHGVERLDVAALHDPASETSTVAIANLLRCCPNLRDLVLRLSTVPPDSTKNGGYCRDVLRRRWQADLDESVHRLARRRGWPKPPPPPPPTKISCMNQSLDDAGGDIHGLSGRSFACLRSLLTRVGIQFRNDERSWLGVSLIKFFAENAICLEEMRVDGGNERMRDHINRRVERWIVESHML
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_11g0538400 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os11g33190 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os11g0538400 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_11g0016290 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_11g0016230 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_11g0016200 | RBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_11g0015770 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_11g0016210 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_11G0308500 | RBH | 0 | 0.790967 | 0.0084345 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_11g0016470 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_11G0316700 | SBH | 0.004639 | 0.365646 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_11g0016410 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_11g0016400 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_11g0016060 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_11g0015810 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_11g0016110 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_11G015910 | RBH | 0.0 | 0.0 | 0.000000 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_11g0016350 | RBH | 0.0 | 2.107827 | 0.0 |
