Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsGoSa_11g0015130 | OGI:11055230 | 15/16 | GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | Chr11:20785320-20789291 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | tcactgtgcaatcaacctaaataaataaacaaatactaaatcatgataagacaatccagaattcaataccttctcacgattttcagtccacctttcacatgcttcaacaacaacctaatagaagacaccaataagtttgatatatcatcaaggatgcaccataaaaatgaaacattgactagtaaaagactcaagtatactacctcttcgaaagtatcttgccaagagttacccttctgcgtgaagattaaccaacaatcctgacattatttacagattgcatttgaaatattaatttggaatagatgagaataacaaaattagaactacagaagacctacaatgattcctctgatcatgtaatgcttaggaagggaatgcccagaaaaaactctctcactgaattcatctacaagatctgaaaagcatttcttgtcctaaaatccaagcaacaagttagtgcatgataactattggaataaataaatttaccactatgacaagtacccagttgatagaatcatcattcgtgtcgaaaaaaccttccgttttgtgatcattcatcaaccttttgatataaccctttagctgaaattgtatttgaaatttgagatttggtcaacagaatttcgaactaaaaacatcgatagtaaaacaggaataattgacacttctattaaactagtgtctaagataaatgcatcatagatgaaattcttgcatgctgtttacttgcacatatgagtatgctacagtattaaggatgtttgatgattgttggaaccaaattgtcccaacaatgatagaaattcttatgctgaaaagaaccaaaatcagctggtgcaaagtttccattccagttgtctttgccgatatgtcttactaaaaagttgcacagatgtcagcaatataatggtcttcactcttccaacaagacaaaacttatatcatgatatcagcagaggcaaaggaaaaatcatatcatggtgaagcaatatttaactacagagtgttacaaacaaaaaggcacaattgaacagcgaagagtaccatatcaatgatgaatgaatacaaacctaattggcccaaatattctatacctcctaccactcaatttgattttgactgtattaagaaaaatggacctaattgacattttatccatagcacaatcttgatactataaactgtttatgaaaacaaactacaaaagaatataaaagaaaaatcctctgcaaacatgagataacatgccctatttttgacaataccagtctttaaaaccctaaaccatgcaatgtttcaaggattgcacattatgtgcaaaacattcaagtggatcatagcaagacatcatgacttgaatttttatgttcttaaactaaacatttagaagttattgatggtcagtgttccaaaagtttgaccaaacataaaggtcaaatatttatgaccagagggagtatcttaaatctagcatcaggaggttattcaccaattccacttttgtcaaaggatatgaaaaatttacatcccaaaaacatttcagatattcagtcagaatgtcatattgtgtggtttgtttagttccaacaatacgcacatagtaatccaaaaacaaaaaaaggtcaatacactgaaatatctaatgtcagatgaaaagaaaacttttgttaactgccaatatgactagcataagatagttgtactcttgatagagtaatcattaaattctgggtatacttccatgaatgttgacaacctagctttacaacactttttaaggatctaatatattatatgttagactctaaactctaaagttcccacttgaggaaagtaaaaatctggtttgagcatttccatgtgtaagtttttgtttcttcaattttccttgcagtctgtatcttcaagagaatatcgcaaaatggtgagctgggattaaacaatgttccattaaaagtctgtccacactactccctccatcccaaaaaaaggcaaaccctgggtttctgtgtccaacgtttgaccgtccgtcttatttgaaaaaattatgaaaaaaatttaaaagacaagtcacgcataaagtattaatcatgttttatcatctaacaacaatgaaaatactaattatAaaaaaatttcatataagacggacaatcaaacgttggacacggaaacccagggtttgtttttttttgggacgaagggagtataaaataacaattctatttcttgggcatgagcggtaaagtgaataagtaaatttctcacccctcgactattgattcatttgaattttgtccatagactacaataccaaatgaaatctatcattcaactctcaaacctggtaaaacttatgacagtgattttacccgagataaacagtggagcccacttgttatagaggttcgtggttcatcatccacgatttcaatattctctgattcaccttttgtgatatgggccatcaagttcactgtctttctagcctcacaacctatgttggtcaaattaactagcaaataaggtagagggggcaagttatacccagttttaatagtcgaggggactaattttatgaggctctgtatttgagggatgaaactcaaaacggatctagagttgagggacgcgataaaattagcaacttttcatgtgattgataccattaaattatgcattacactcgaaatagtacttcaggaccactcccattgttctagtgtgtattagactccgttgacatactatagttttgtaaggttgatgaacttattgaacaataaaactactttccacatttttattagggtgaatagctaaagtggtcctccaagtttcatccgaggctcagtttggtccttgatgtttcaatctatccgtattagtcctcaagttttcatttgagttcaaacttatccttgaacccacttagaagccacatggctaaacataaccaacaaccctcttgataaatgacacttatacccctcattcacatatataagagaaaaaattgcatgcaatgattttttttatagataatgcatagtaatttacgtaaaagcgaaaataaattatatacttgcaagtgtatacgataggcattgcttaagtttcaagtgcacatgttgaaataatgggaagtacatctgcaatattgtttattcattttggttttctcttttatagtgtatagttgtatacaaattaagggcaagagggacattttctaacagaaatattgactagaaatagccatatggcatattatgtggttccaaggatgattttaagccaaaacaaatacttaggggacctatgtggacaaaacgaaacctgaagaactaaattgagccttcaatgaaacttgagggactaaattagctattcaccctttttattactacagctatttcaactagaaacgataataacaggaccctgttctactttggcaatattggcaagtataggattcagcaaactgttaacttcacctatgaatgacgatgacaacaaataaagcaactgcatgtagaggacagataataaaggttactttgataaaaagagaactctgatgatgattaataaattgtatactgcataccgactcatcctccaagaggcgtcgtaaacattctgaatatatgcaaatttgttgctgattttccagaacatcagctctcctctgcaaggggaaaaacatgctaagggagtattcatgaaacagattgcaaggataagcattacataagaaacattagcacctccaaagacaatttcaagagagcatgattcaaatctgaaaactgtgccatcgtgctctcgtctctaatgagatcttctacaaattcatcctgcaaatgacatacaattgaaagttaatgttgaaaacagcataatgctatgttaatggtgatctgcagagtcttttacctttgaagaaataaactcatccat
More
|
||||||||||
| CDS seq | atggatgagtttatttcttcaaaggatgaatttgtagaagatctcattagagacgagagcacgatggcacagttttcagatttgaatcatgctctcttgaaattgtctttggagaggagagctgatgttctggaaaatcagcaacaaatttgcatatattcagaatgtttacgacgcctcttggaggatgagtcgctaaagggttatatcaaaaggttgatgaatgatcacaaaacggaaggttttttcgacacgaatgatgattctatcaactgggttgttgttgaagcatgtgaaaggtggactgaaaatcgtgagaaggtattgaattctggattgtcttatcatgatttagtatttgtttatttatttaggttgattgcacagtga |
||||||||||
| Protein seq | MDEFISSKDEFVEDLIRDESTMAQFSDLNHALLKLSLERRADVLENQQQICIYSECLRRLLEDESLKGYIKRLMNDHKTEGFFDTNDDSINWVVVEACERWTENREKVLNSGLSYHDLVFVYLFRLIAQ |
||||||||||
| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsGoSa_11g0015130 | OsGoSa_11g0015130.01 | Chr11 | 20785320 | 20789291 | - | NAM | ||
| CDS seq | atggatgagtttatttcttcaaaggatgaatttgtagaagatctcattagagacgagagcacgatggcacagttttcagatttgaatcatgctctcttgaaattgtctttggagaggagagctgatgttctggaaaatcagcaacaaatttgcatatattcagaatgtttacgacgcctcttggaggatgagtcgctaaagggttatatcaaaaggttgatgaatgatcacaaaacggaaggttttttcgacacgaatgatgattctatcaactgggttgttgttgaagcatgtgaaaggtggactgaaaatcgtgagaaggtattgaattctggattgtcttatcatgatttagtatttgtttatttatttaggttgattgcacagtga
More
|
|||||||
| Protein seq | MDEFISSKDEFVEDLIRDESTMAQFSDLNHALLKLSLERRADVLENQQQICIYSECLRRLLEDESLKGYIKRLMNDHKTEGFFDTNDDSINWVVVEACERWTENREKVLNSGLSYHDLVFVYLFRLIAQ |
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_11g0519500 | SBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os11g31680 | RBH | 0.000000 | 0.0 | 0.284000 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os11g0519500 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_11g0015310 | RBH | 0.0 | 0.0 | 3.820550 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_11g0015270 | RBH | 0.0 | 0.0 | 2.159299 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_11g0015220 | RBH | 0.152978 | 0.0 | 8.395219 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_11g0014860 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_11g0015320 | SBH | 0.0 | 0.0 | 8.862785 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_11G0293600 | SBH | 0.00402 | 0 | 2.25465 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_11g0015530 | SBH | 0.0 | 0.0 | 0.469927 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_11G0303600 | SBH | 0.0083425 | 0.90486 | 6.140133 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_11g0015540 | SBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_11g0015430 | SBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_11g0015220 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_11g0014890 | SBH | 0.0 | 0.0 | 0.553151 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_11g0015200 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_11G015030 | SBH | 0.0 | 0.0 | 0.247378 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_11g0015340 | RBH | 0.0 | 0.0 | 3.826103 |
