Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsGoSa_11g0009640 | OGI:11018740 | 16/16 | GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | Chr11:8959995-8962691 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ctacatcatggtgtatggcagtgatggtgttaccacctctgcttgtactggacactttgatgtgtttgaatcactctttttctttttactccgttgtgttgccttgtcaaaaccaccaattggtctcctcgacccacgaatggctttctcctttacctttatgcctcttgctttactcgggccaacattttcctctatacctatgataaaatatttttgagatatctaatttagattataacatagtagtcactagcataagtactattcaattcagagtatgatacaaacctgatttatccaaatcttgatcaggccttatactcaagtatttctccacatcttctgctaacttttgtgcattgttggcagccattaagtatgtttcatcagattctgtagctcgagaagctattttaacaaacattctgcacaagtctctcctgcgtgttgataactttattttaggatcttcatgagtactgcagttgctctttatatgtagagattttgcatcaatggtccatctttgtagtatgtattgcttaggaatttcttttatattgttaacatcaagtatcttcaatgcatggcaacataggattccgagaaattcaaacttcttgcagctgcacctgactttaccttctgttggagaaaattttacaacatgctcatggtgcttaccgtgaacttttaatttgtacaccattttagcatcaatatcaccacagtagtataggtcacagttcaatgtttgcaacacttgttcctgaaacactttaaatattgctggagtataaattcttgttgtttgccttaatattgtcaaatctgctttcggccatggtgtactttgtgttgtcttaaagtcatttttgacttcctcatatcttttgtctgacaacaacctgtcaaagtgttccaagaaggtaagtatgtcatatttcacactgatatagcccttcaattcattgttcatgctctcacttctctgtgttccactcatatcagcagaaaatgtgtttctcccatacactaatgcccattgctcttttttctgaaatagcctctcaagccatttgttctcctgcagatcatacttttcaagcattctattccatgcatttataaattcatcttcctcctctttgtcataaatacaattctgaaaatctgcattgaatttcttgtactccttcacaactccagcaaggtgtttgcaggcattttggttcatatgccaaacacaaattctatgatgactttctggcatgactaacttgattgctttggccattgctgcgtcttcaccggtcaatatagtctatggcttctttccagacatggcttttaaaaatgtcttgaaaagccaaacaaaactatcagcagtttcatcatacaaaagtgcagCACcaaaaacaacgcttttcttatgattatccacaccaacaagcaaaccaaatggacgaccatcatttagttttctatatgttgtgtcaaaacaaagaacatcaccaaaaacttaataatcagcaatcattttagaatcagtccagaaaatatttgttatcaagtcatcctcatcaacctaaatggaatagaaaaaattaacatcttccgatgattttttctccatatattccaagactccccctgtgtcaccttcgtttaccttcagtgacctctttgaatataatctattcttcatgtcttcacgagtaaatccaagattctcatatccacctgcttcttttgccattaaatcaatagtagccttattagaaatgcctactgattttgcattttcagcacttgccatctgtgcttcagttattttcctttgagatcttaagtagagggcctgacttccagtagcaagaatgtggttatgctcgtgcaagaattcttatatgcaatacaatccatcatccctaagacttatcttcatgcatgctcgacacatacatcgtgtttctggcctactaaaacacattacgtaatttgaaatttggtcttctcttttatcatgaccacgagtacctattgttaaataaaactaactcagtatatgaattctatatgaacactgaactttgtaaatataagttggaactagtacctgcacgagaacaacaaaatgtccgattctttattatggtggaatctttcacataatggcaactgcttcttcgaatgctaaaacccatgtcccgagcataggcattatagaaatcatatgcctcttgttcactgttgaatttcataccgatgattggtgccttccctttggagggatctacttgtggagtagcttcgattttagtaggatcctgattaatataccattttttatttgagacaaattagaaaagaagaaaaactttcatgaaacttacagaacAaaaaaaaaagggctaatagaaaagaagcaaaacttctatgagatttactgaacggagatatgatgtgcttgtagtgatcaagtctcaatgattactaataaaagaaagtgaaaacattatgaagtcttaccgtctctaattccccttgcaggttaccatgaaagtttgtccctggatgatgcagtacagacgtttcagcagaggcagctggttccgtcgacatggttgtcacttgttcatgcagtgaatcggtgaccttgattgaccttggaagattagatagagaggccat
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| CDS seq | atggcctctctatctaatcttccaaggtcaatcaaggtcaccgattcactgcatgaacaagtgacaaccatgtcgacggaaccagctgcctctgctgaaacgtctgtactgcatcatccagggacaaactttcatggtaacctgcaaggggaattagagacggaacaagtgttgcaaacattgaactgtgacctatactactgtggtgatattgatgctaaaatggtgtacaaattaaaagttcacggtaagcaccatgagcatgttgtaaaattttctccaacagaaggtaaagtcaggtgcagctgcaagaagtttgaatttctcggaatcctatgttgccatgcattgaagatacttgatgttaacaatataaaagaaattcctaagcaatacatactacaaagatggaccattgatgcaaaatctctacatataaagagcaactgcagtactcatgaagatcctaaaataaagttatcaacacgcaggagagacttgtgcagaatgtttgttaaaatagcttctcgagctacagaatctgatgaaacatacttaatggctgccaacaatgcacaaaagttagcagaagatgtggagaaatacttgagtataaggcctgatcaagatttggataaatcaggtatagaggaaaatgttggcccgagtaaagcaagaggcataaaggtaaaggagaaagccattcgtgggtcgaggagaccaattggtggttttgacaaggcaacacaacggagtaaaaagaaaaagagtgattcaaacacatcaaagtgtccagtacaagcagaggtggtaacaccatcactgccatacaccatgatgtag
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| Protein seq | MASLSNLPRSIKVTDSLHEQVTTMSTEPAASAETSVLHHPGTNFHGNLQGELETEQVLQTLNCDLYYCGDIDAKMVYKLKVHGKHHEHVVKFSPTEGKVRCSCKKFEFLGILCCHALKILDVNNIKEIPKQYILQRWTIDAKSLHIKSNCSTHEDPKIKLSTRRRDLCRMFVKIASRATESDETYLMAANNAQKLAEDVEKYLSIRPDQDLDKSGIEENVGPSKARGIKVKEKAIRGSRRPIGGFDKATQRSKKKKSDSNTSKCPVQAEVVTPSLPYTMM |
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| Function | Protein FAR-RED ELONGATED HYPOCOTYL 3 [UniProtKB/Swiss-Prot:Q9LIE5] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsGoSa_11g0009640 | OsGoSa_11g0009640.01 | Chr11 | 8959995 | 8962691 | - | NAM | ||
| CDS seq | atggcctctctatctaatcttccaaggtcaatcaaggtcaccgattcactgcatgaacaagtgacaaccatgtcgacggaaccagctgcctctgctgaaacgtctgtactgcatcatccagggacaaactttcatggtaacctgcaaggggaattagagacggaacaagtgttgcaaacattgaactgtgacctatactactgtggtgatattgatgctaaaatggtgtacaaattaaaagttcacggtaagcaccatgagcatgttgtaaaattttctccaacagaaggtaaagtcaggtgcagctgcaagaagtttgaatttctcggaatcctatgttgccatgcattgaagatacttgatgttaacaatataaaagaaattcctaagcaatacatactacaaagatggaccattgatgcaaaatctctacatataaagagcaactgcagtactcatgaagatcctaaaataaagttatcaacacgcaggagagacttgtgcagaatgtttgttaaaatagcttctcgagctacagaatctgatgaaacatacttaatggctgccaacaatgcacaaaagttagcagaagatgtggagaaatacttgagtataaggcctgatcaagatttggataaatcaggtatagaggaaaatgttggcccgagtaaagcaagaggcataaaggtaaaggagaaagccattcgtgggtcgaggagaccaattggtggttttgacaaggcaacacaacggagtaaaaagaaaaagagtgattcaaacacatcaaagtgtccagtacaagcagaggtggtaacaccatcactgccatacaccatgatgtag
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| Protein seq | MASLSNLPRSIKVTDSLHEQVTTMSTEPAASAETSVLHHPGTNFHGNLQGELETEQVLQTLNCDLYYCGDIDAKMVYKLKVHGKHHEHVVKFSPTEGKVRCSCKKFEFLGILCCHALKILDVNNIKEIPKQYILQRWTIDAKSLHIKSNCSTHEDPKIKLSTRRRDLCRMFVKIASRATESDETYLMAANNAQKLAEDVEKYLSIRPDQDLDKSGIEENVGPSKARGIKVKEKAIRGSRRPIGGFDKATQRSKKKKSDSNTSKCPVQAEVVTPSLPYTMM
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_11g0244900 | SBH | 0.656306 | 0.353039 | 0.672002 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os11g15755 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os11g0244900 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_11g0009810 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_11g0009700 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_11g0007430 | SBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_11g0009530 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_11g0009560 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_11G0134900 | RBH | 0 | 0 | 0.0972705 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_11g0009640 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_11G0138700 | RBH | 0 | 0 | 0.2880675 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_11g0007600 | SBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_11g0009750 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0004370 | SBH | 0.000000 | 0.000000 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_11g0009510 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_11g0009670 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_11G009800 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_11g0009560 | RBH | 0.0 | 0.0 | 0.0 |
