Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsGoSa_11g0009600 | OGI:11020450 | 16/16 | GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | Chr11:8875315-8877735 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | tcagactatatttactgtgaccccttccaacataatgcactgatgttgtagctcctcgctgcagcgacgatcaacatatattttccgcagtgagttcggaaaggcgttcttgggcagagacctgatggctggacagctcaggatttccaatatcttgagattcttcagtccatgtagaccagtggggagagattgcagcttctcattgtcaaaaaagcagagttcctggagggaggtgatgagttcaagtgctttctcttgctcttttgtgaagctcacaatctcttcgttgaaacataggcctaaaacattaagcgaagaagaaaagagtctgcaaataggtgccacaaggacccctgcaatatcatcggtaaagagcatttcaattttgcagtatgcaggaagctcttcttgttgttgagacaccaaattgtcgaagaaatttggactgcgataaacgcacagatgggtgaggcagccttgagtgaagagggtccataaaccttctactcttaaatccttcccacagttctttacatataaataagtgagactagtcaggtttgagaggggcgcgaacgtatgcatatcctcaacatcctcaattctgaggctgtccagagtagatggaaacagaaaacaataagaggaggatgaggagtaggctgagagaagtttggggcaccctcttatggaaagtgtttgcagggagtgcagattgtgaagacctcctggcctggagttattttcaggaggaagggaagccagcaggctcaatcctgggttcatggtaatccgtaattcacgcagggaaatggtgagattttttgggaataacagcagccctccttcatcacccacttcttccatttgtagttgtgatcccatttcattacttgaagtcgaagacgatggcatggaagttggttcagctgtggccagctgcgtcattacacccaatctagttacgttctgacaagaagacatcctgaagaaggagagcttaggcagttgcaacaaaaattgggtcaattccttcccattggcactacagttttgaatctcaaggcgttccaaaacaagcatgtgtttttcatcatctggccctcccaggagctgcaatgtaatacttgaatcacttatcttgagtgttttcagtgatgttaacccatggaggtgtttattcatcaaaggtgggctttttgagacctccaactcatgtattttacttaaattgtgaaaggcaaccatctcatcaaggcattccagatgatgatcttctttgatttccaactatagtttggatgatgaacttttagtggagtaaactaacttttccaaacttgaacccacattcttcatgtcaacagtgtgcaaagtatcagtccatggaataagtggtagggattccaattttgggcagtcagcaattctgacctcttgcatcttaggaaacagatcaatcatcacatcttgcttaaatttctgactagcatattgagaaactggtaactctaccagttctgggcaatctctaattatgaaagtttctaaaagggagaacaggagaaatttgtcattgtgaacccatttttccaatcatgtgagtccaacaagttctagagttttcaagttttgaaagctttttccttggacagaacgaagatattcctgaccaggttctttagggagccaaaattccccgagtggtgggaagacagtccagttgacggtgtcaagatgaagggattgtaagttttttactgaaagtttgctaccaagccatggtgggcaactatggcctccatgtcctctgatgcatagctcttggagattgtcatgaggtcgaagaacgttaagaatatgttgttctttgtcaggttccttctgggatcgctgaacatcccactctaatgttagcttctttaagctattttttgacaacagattcacttcatctgcttctttcgcttgcattttctccagattacagatactaagtgatccactgagctgcatcaaatgtcccagctgttttatttcaaaaccacttttctctctgttgacttcaaatcttcttaactcttggagtgtttgcagctttcctacctcacaaatctttgagtgagtttcatcgtgtgagacaataaaatgccgcaatcttgcaaggttgctcatatctacaggcaaattgatacttcctttccaatctttcagatcaaggacaatcaacttatagaatctagatatacatctcggtggggatatcttatcatactctgacccaagctttaggtagcggagatgcataagcgcggaaaagttatgcagtatatgattgacaggatagtacatagtagataaacgaagaacacggagagCctttgcttttctgaacacatctccaaaggtattcgccat
More
|
||||||||||
| CDS seq | atggcgaatacctttggagatgtgttcagaaaagcaaagGctctccgtgttcttcgtttatctactatgtactatcctgtcaatcatatactgcataacttttccgcgcttatgcatctccgctacctaaagcttgggtcagagtatgataagatatccccaccgagatgtatatctagattctataagttgattgtccttgatctgaaagattggaaaggaagtatcaatttgcctgtagatatgagcaaccttgcaagattgcggcattttattgtctcacacgatgaaactcactcaaagatttgtgaggtaggaaagctgcaaacactccaagagttaagaagatttgaagtcaacagagagaaaagtggttttgaaataaaacagctgggacatttgatgcagctcagtggatcacttagtatctgtaatctggagaaaatgcaagcgaaagaagcagatgaagtgaatctgttgtcaaaaaatagcttaaagaagctaacattagagtgggatgttcagcgatcccagaaggaacctgacaaagaacaacatattcttaacgttcttcgacctcatgacaatctccaagagctatgcatcagaggacatggaggccatagttgcccaccatggcttggtagcaaactttcagtaaaaaacttacaatcccttcatcttgacaccgtcaactggactgtcttcccaccactcggggaattttggctccctaaagaacctgaaactttcataattagagattgcccagaactggtagagttaccagtttctcaatatgctagtcagaaatttaagcaagatgtgatgattgatctgtttcctaagatgcaagaggtcagaattgctgactgcccaaaattggaatccctaccacttattccatggactgatactttgcacactgttgacatgaagaatctcctgggagggccagatgatgaaaaacacatgcttgttttggaacgccttgagattcaaaactgtagtgccaatgggaaggaattgacccaatttttgttgcaactgcctaagctctccttcttcaggatgtcttcttgtcagaacgtaactagattgggtgtaatgacgcagctggccacagctgaaccaacttccatgccatcgtcttcgacttcaagtaatgaaatgggatcacaactacaaatggaagaagtgggtgatgaaggagggctgctgttattcccaaaaaatctcaccatttccctgcgtgaattacggattaccatgaacccaggattgagcctgctggcttcccttcctcctgaaaataactccaggccaggaggcctatgtttcaacgaagagattgtgagcttcacaaaagagcaagagaaagcacttgaactcatcacctccctccaggaactctgcttttttgacaatgagaagctgcaatctctccccactggtctacatggactgaagaatctcaagatattggaaatcctgagctgtccagccatcaggtctctgcccaagaacgcctttccgaactcactgcggaaaatatatgttgatcgtcgctgcagcgaggagctacaacatcagtgcattatgttggaaggggtcacagtaaatatagtctga
More
|
||||||||||
| Protein seq | MANTFGDVFRKAKALRVLRLSTMYYPVNHILHNFSALMHLRYLKLGSEYDKISPPRCISRFYKLIVLDLKDWKGSINLPVDMSNLARLRHFIVSHDETHSKICEVGKLQTLQELRRFEVNREKSGFEIKQLGHLMQLSGSLSICNLEKMQAKEADEVNLLSKNSLKKLTLEWDVQRSQKEPDKEQHILNVLRPHDNLQELCIRGHGGHSCPPWLGSKLSVKNLQSLHLDTVNWTVFPPLGEFWLPKEPETFIIRDCPELVELPVSQYASQKFKQDVMIDLFPKMQEVRIADCPKLESLPLIPWTDTLHTVDMKNLLGGPDDEKHMLVLERLEIQNCSANGKELTQFLLQLPKLSFFRMSSCQNVTRLGVMTQLATAEPTSMPSSSTSSNEMGSQLQMEEVGDEGGLLLFPKNLTISLRELRITMNPGLSLLASLPPENNSRPGGLCFNEEIVSFTKEQEKALELITSLQELCFFDNEKLQSLPTGLHGLKNLKILEILSCPAIRSLPKNAFPNSLRKIYVDRRCSEELQHQCIMLEGVTVNIV |
||||||||||
| Function | Putative disease resistance protein RGA4 [UniProtKB/Swiss-Prot:Q7XA39] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsGoSa_11g0009600 | OsGoSa_11g0009600.01 | Chr11 | 8875315 | 8877735 | - | NAM | ||
| CDS seq | atggcgaatacctttggagatgtgttcagaaaagcaaagGctctccgtgttcttcgtttatctactatgtactatcctgtcaatcatatactgcataacttttccgcgcttatgcatctccgctacctaaagcttgggtcagagtatgataagatatccccaccgagatgtatatctagattctataagttgattgtccttgatctgaaagattggaaaggaagtatcaatttgcctgtagatatgagcaaccttgcaagattgcggcattttattgtctcacacgatgaaactcactcaaagatttgtgaggtaggaaagctgcaaacactccaagagttaagaagatttgaagtcaacagagagaaaagtggttttgaaataaaacagctgggacatttgatgcagctcagtggatcacttagtatctgtaatctggagaaaatgcaagcgaaagaagcagatgaagtgaatctgttgtcaaaaaatagcttaaagaagctaacattagagtgggatgttcagcgatcccagaaggaacctgacaaagaacaacatattcttaacgttcttcgacctcatgacaatctccaagagctatgcatcagaggacatggaggccatagttgcccaccatggcttggtagcaaactttcagtaaaaaacttacaatcccttcatcttgacaccgtcaactggactgtcttcccaccactcggggaattttggctccctaaagaacctgaaactttcataattagagattgcccagaactggtagagttaccagtttctcaatatgctagtcagaaatttaagcaagatgtgatgattgatctgtttcctaagatgcaagaggtcagaattgctgactgcccaaaattggaatccctaccacttattccatggactgatactttgcacactgttgacatgaagaatctcctgggagggccagatgatgaaaaacacatgcttgttttggaacgccttgagattcaaaactgtagtgccaatgggaaggaattgacccaatttttgttgcaactgcctaagctctccttcttcaggatgtcttcttgtcagaacgtaactagattgggtgtaatgacgcagctggccacagctgaaccaacttccatgccatcgtcttcgacttcaagtaatgaaatgggatcacaactacaaatggaagaagtgggtgatgaaggagggctgctgttattcccaaaaaatctcaccatttccctgcgtgaattacggattaccatgaacccaggattgagcctgctggcttcccttcctcctgaaaataactccaggccaggaggcctatgtttcaacgaagagattgtgagcttcacaaaagagcaagagaaagcacttgaactcatcacctccctccaggaactctgcttttttgacaatgagaagctgcaatctctccccactggtctacatggactgaagaatctcaagatattggaaatcctgagctgtccagccatcaggtctctgcccaagaacgcctttccgaactcactgcggaaaatatatgttgatcgtcgctgcagcgaggagctacaacatcagtgcattatgttggaaggggtcacagtaaatatagtctga
More
|
|||||||
| Protein seq | MANTFGDVFRKAKALRVLRLSTMYYPVNHILHNFSALMHLRYLKLGSEYDKISPPRCISRFYKLIVLDLKDWKGSINLPVDMSNLARLRHFIVSHDETHSKICEVGKLQTLQELRRFEVNREKSGFEIKQLGHLMQLSGSLSICNLEKMQAKEADEVNLLSKNSLKKLTLEWDVQRSQKEPDKEQHILNVLRPHDNLQELCIRGHGGHSCPPWLGSKLSVKNLQSLHLDTVNWTVFPPLGEFWLPKEPETFIIRDCPELVELPVSQYASQKFKQDVMIDLFPKMQEVRIADCPKLESLPLIPWTDTLHTVDMKNLLGGPDDEKHMLVLERLEIQNCSANGKELTQFLLQLPKLSFFRMSSCQNVTRLGVMTQLATAEPTSMPSSSTSSNEMGSQLQMEEVGDEGGLLLFPKNLTISLRELRITMNPGLSLLASLPPENNSRPGGLCFNEEIVSFTKEQEKALELITSLQELCFFDNEKLQSLPTGLHGLKNLKILEILSCPAIRSLPKNAFPNSLRKIYVDRRCSEELQHQCIMLEGVTVNIV
More
|
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_11g0263000 | RBH | 0.0 | 0.112201 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os11g15670 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os11g0263000 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_11g0009780 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_11g0009670 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_11g0009670 | RBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_11g0009500 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_11g0009480 | RBH | 1.412906 | 5.412088 | 4.463073 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_11G0117100 | SBH | 0.652459 | 1.500245 | 1.35839 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_11g0009560 | RBH | 0.000000 | 0.399537 | 0.591033 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_11G0137500 | RBH | 0 | 0.2619365 | 0.1063525 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_11g0009670 | RBH | 0.018597 | 0.325050 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_11g0009670 | RBH | 0.082107 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_11g0009480 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_11g0009620 | RBH | 0.103555 | 5.815471 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_11G009770 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_11g0009540 | RBH | 0.497449 | 11.340217 | 1.387056 |
