Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsGoSa_11g0007920 | OGI:11077130 | 16/16 | GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | Chr11:6852407-6854386 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ttaaaaggccgggtgagacagagccgaaacggggctccgataggtgacagatacacatttcaggatcactaacaagcagacgaaacagagtacatcgaaagacatggcagctacactcgggggacatcggccttggcagtggaatcattggagacaaaatctgcttcgcttgaactgtaagccggtcggaggcagtcacaggggcgccactgccgcatttttcttcgaattcttcatccggatcgtcttgcaccctcccttttcaaccaagtcggcgattatcttcagtgatgctggcgagagaggcttcttgtaccgctgtaaatacaactttttaatgttatcatcaaaagaagcagattcatcaatgataccaaatttctttgagaggatttcttgggcaaagttttcaagcttcgcgccagcacgacgcttgcaaagcagacgctcgctgtgtcgttgcgccgaaactaaagcagggattttcacctttgcacgggaaggcttccgtgcattgacgtcgggggctggcaggagaggcggctggactggagttgcaaggccgttgatgaagctgtcaatctgcattgccttgcacgcagaaggtgtgtctgctcccgcatgtcctgtagaagtaggcacaaaaacaggggaagagacacgaggggaggaagtatctggagaatagatggaatgatgcacggctgcttcatgaagcattgggtcgagatggctctccaaaatgtcgaggatgtccacacgcccctgcgaaaagagtggttcatcaggctgaaggatttcaacggctgcgacagaagtgcagaccaagggagaagccgcatcatcatctgaacccaggtttcgaagaggggacaacaacttgcagggggaagcagcagcagaagaggggattaggggagggagctgaggatcagtctgggcaggcaggggaggtctcacctcgcttggctcgcgggaacgatgacctcggtatctgtgatcagagcgctctctgtcccgcgatctgcccctcctttcttggtcacgtcgctgggtgtctcgccggttcggatctctgcttcggctgtgggagcgcccgctcagccgatcccagagggagcggcttctatgccgacccctggaaggatcgtttccatcttcgtcttcatcatccgggccacgagctgggtccggctcagccctgcagggaagcgggtactctctgaagttgatgctgtcgtcctggactttatagtcccacttgtacgcccaggctttgcgagcgtgaagatcttcgagggtgtccacatgaatgaggacgtcgtaggaccagcccttctttggctcagaaggaggaggattgcggagtggctccagctcggggagggggatgtcagtggggaggccttccttgtcagcagacgtgatggcaaaggaaccaccccgagggatggctctcggctcatctgtccaaacccacatgtcatatgtgcggttgtaattgccacgcctggagtactcctccacatagtggatagaacacttgcgaccgatcacctttgccgccgtttcatcagtatgggcatgcattggcacaccttcgatacagaggcgagcacggtagcgatagcgaactgggacaccatggagactttcatcccaaggacgaaagaggaagactcggccagaggccgtagcaagccttggttggcggaggatggcatcgcgatcactttggttggagcaggtaacaaagaaatcttcggggtggaatttggtgaattggatgtcagctcttctaatgtggaaagcagaacgaacatcgtcagcgaagacattaagctcaactttgtcacccagagccccaacttgccaggcaactaaggagcgagcaaagaaacgttctctgcgcctctcaatctcgccagtggctgagacgaccaccgagtcaaggagaggacgggcagtgaggtcgtccat
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| CDS seq | atggacgacctcactgcccgtcctctccttgactcggtggtcgtctcagccactggcgagattgagaggcgcagagaacgtttctttgctcgctccttagttgcctggcaagttggggctctgggtgacaaagttgagcttaatgtcttcgctgacgatgttcgttctgctttccacattagaagagctgacatccaattcaccaaattccaccccgaagatttctttgttacctgctccaaccaaagtgatcgcgatgccatcctccgccaaccaaggcttgctacggcctctggccgagtcttcctctttcgtccttgggatgaaagtctccatggtgtcccagttcgctatcgctaccgtgctcgcctctgtatcgaaggtgtgccaatgcatgcccatactgatgaaacggcggcaaaggtgatcggtcgcaagtgttctatccactatgtggaggagtactccaggcgtggcaattacaaccgcacatatgacatgtgggtttggacagatgagccgagagccatccctcggggtggttcctttgccatcacgtctgctgacaaggaaggcctccccactgacatccccctccccgagctggagccactccgcaatcctcctccttctgagccaaagaagggctggtcctacgacgtcctcattcatgtggacaccctcgaagatcttcacgctcgcaaagcctgggcgtacaagtgggactataaagtccaggacgacagcatcaacttcagagaccccgtttcggctctgtctcacccggccttttaa
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| Protein seq | MDDLTARPLLDSVVVSATGEIERRRERFFARSLVAWQVGALGDKVELNVFADDVRSAFHIRRADIQFTKFHPEDFFVTCSNQSDRDAILRQPRLATASGRVFLFRPWDESLHGVPVRYRYRARLCIEGVPMHAHTDETAAKVIGRKCSIHYVEEYSRRGNYNRTYDMWVWTDEPRAIPRGGSFAITSADKEGLPTDIPLPELEPLRNPPPSEPKKGWSYDVLIHVDTLEDLHARKAWAYKWDYKVQDDSINFRDPVSALSHPAF |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsGoSa_11g0007920 | OsGoSa_11g0007920.01 | Chr11 | 6852407 | 6854386 | - | NAM | ||
| CDS seq | atggacgacctcactgcccgtcctctccttgactcggtggtcgtctcagccactggcgagattgagaggcgcagagaacgtttctttgctcgctccttagttgcctggcaagttggggctctgggtgacaaagttgagcttaatgtcttcgctgacgatgttcgttctgctttccacattagaagagctgacatccaattcaccaaattccaccccgaagatttctttgttacctgctccaaccaaagtgatcgcgatgccatcctccgccaaccaaggcttgctacggcctctggccgagtcttcctctttcgtccttgggatgaaagtctccatggtgtcccagttcgctatcgctaccgtgctcgcctctgtatcgaaggtgtgccaatgcatgcccatactgatgaaacggcggcaaaggtgatcggtcgcaagtgttctatccactatgtggaggagtactccaggcgtggcaattacaaccgcacatatgacatgtgggtttggacagatgagccgagagccatccctcggggtggttcctttgccatcacgtctgctgacaaggaaggcctccccactgacatccccctccccgagctggagccactccgcaatcctcctccttctgagccaaagaagggctggtcctacgacgtcctcattcatgtggacaccctcgaagatcttcacgctcgcaaagcctgggcgtacaagtgggactataaagtccaggacgacagcatcaacttcagagaccccgtttcggctctgtctcacccggccttttaa
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| Protein seq | MDDLTARPLLDSVVVSATGEIERRRERFFARSLVAWQVGALGDKVELNVFADDVRSAFHIRRADIQFTKFHPEDFFVTCSNQSDRDAILRQPRLATASGRVFLFRPWDESLHGVPVRYRYRARLCIEGVPMHAHTDETAAKVIGRKCSIHYVEEYSRRGNYNRTYDMWVWTDEPRAIPRGGSFAITSADKEGLPTDIPLPELEPLRNPPPSEPKKGWSYDVLIHVDTLEDLHARKAWAYKWDYKVQDDSINFRDPVSALSHPAF
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_11g0227300 | RBH | 0.000000 | 0.000000 | 0.665653 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os11g12010 | RBH | 0.000000 | 0.000000 | 0.171352 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os11g0227300 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_08g0010400 | SBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_06g0021310 | SBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_08g0010590 | SBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_08g0010440 | SBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_11g0023010 | SBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_12G0197000 | SBH | 0 | 0.004135 | 0.200231 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_06g0019700 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_08G0184400 | SBH | 0 | 0 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_08g0009920 | SBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_11g0023720 | SBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_08g0009950 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_Ung0065120 | RBH | 0.0 | 0.0 | 0.073892 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_08g0010050 | SBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_08G010190 | SBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_08g0010170 | SBH | 0.0 | 0.0 | 0.0 |
