Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsGoSa_11g0007580 | OGI:11019190 | 16/16 | GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | Chr11:6580273-6583197 | ||||||||
| Gene Symbol | OsCRR4 | ||||||||||
| DNA seq | ctagtcagtgtcagtgaggtcaaactggtctgtcccggagcgggagagggcgcggcggccggcgccggtgacggtgccggagcgggagagcgacgcggcggcgcaggcggcgagggcgcgctccagggcgtcgacgacctcggtcatggacgggcggtcgcagccgacggggccgacgcagtcggcggcgaggtagccgacgtaggcgagcgcgtcggcctcgtgcggcgtcggcggcgggatgcgcgggtcgagcacccgcgccagctcgtcggcgaggatgtgcggcacggcgaactccaccacgttcttgggcgtcacgctctcggcgtagcgctgcacgacgcggcacccggacatgagctccaggagcaccaCcccgaagctgtacacgtcgctcttgtccgtcaggtgctgcatccggtagtactccgggtccatgtaccccaccgtgccgcccgtgtacagcggcctcgagctgctcccctcgccgccgccgccgccgccgccggcggtggccggatctaggatggaggagaggccgaagtcggcgatcttggccgtccacgagtcgtcgagcaggatgttggccgacttgatgtcgcggtggatgatgttgggcacggcgtagacgtgcatgtactcgatgccgcgcgccgcgtcgagcgcgatggtgaggcggccgcgccacgccgacaccggcggcgccatggggctccggccgtggagctggtcgtggagggtgccgttcgccatgtactcgtacaccagcacgcgctcgccggcgtcggcgcagcagccgaggaggcacacgatgttcttgtggttggcgcgcgccagcgcggtgagctccgagttgaacgccgtctccctgtcgcgccgccgcgccggcctcgccgccgagctcgacgacttcgcctggtcctcggcgcgcttgatcgccacctcccgcccgtcggtcagcgtgccgcggtacaccgacccgaagctccccgatccgatccgccgctcgtcggagaacccgtccgtcgccgcctggagcgcctccagggcgaaatgctccaccacgctgcccggccccttgctcgacccatgccgcggcagcatcagcgacatcgccgccgcttggtccgcctgcccgcccctgccgcgccgccgccgccggcgacaccacatgagcagcgcgaactgcaatgccacgagcagcacgaggaacgcgcccgcggcgacggcgacccagatgatcctgctccgcttgctgctgctcttgccggggccagggccgagcgacgacgcattgggcgtggcgacgttgagctcgaacgcgcagtccacgcagatgcagcgaccggaggcgcagaggttggccgagcccggcaggacgccgcacctgcacgacgacatggtcacgcacgggcccgggaggacgcggtcgaacaccaggcggttggtggcgttgaactcgtgcccgccccagcagacgagggagtagttcgccatgaggacgccgcagaagacgctcccgtgcgcctggacgtcgacgtactggaaccccgcgaggctgtccggcggcggcgccacgccgtcgccgaagcagcggatggtgctgttggtgcgcagcccgcagacgccgtcggtgcccaatgccagcgccgcgtacccggtggtggcctcgtcctcgccgccgcccaccagcggcgcgccgtggccccagcacgagagcgcgccggacgtggacagcgcgcacgcgcggcggccgtgcgcggcgaccacgtcgaagctcccgccctccggcgccgagcttaccgcctccgtgtcgttgccgaagcaccggatggacgccggccgcgccgcctggatggcgcacacgaaccagtcgccgacggcgacggagacgaaccggagcccgtcggggatcttcagcccgcgccaccgccagcagtggagctcgccgctggagagcacgccgcagacacggtacccaccggaggacagcgcctggatcggcgggccgagatacaccctcttcgacctcccgccaccatccttcgtcccgttcgtctccggcgtgttcgtccggttcttggacagatcccaccaccgcatcgcgacgtcgccggcgcggagcgccgacgggccgaccgcgcagaggaagtggtcgccgccggcgagcgcggagaaggggtgcgacgacgggtacgtctcctgccgctcgtggtcgccgccggcctccgtgcaattgaggtccacgagcagcggcgacgccgccgacggcagcagcgcgcacactatcgtcgtggactccgccttggccatggcgaaggtggacaaggtgttcgtcgccgccgtccgcaggaggagcagcaccggcagcaagaacacgaggaggcgggcaccaccatggccatggcggcgaggcggcggcatcggagagcgcagcgggaggaggcgaggtgggagaagaagcaagggggcaggtgggtggacatggacatggcaaggcaccaccacacaagctagtgtgaggaatttggtgaggtcaggtggtggtgatgatggatttggtctcctacccagctccttcacctcacttcttcttctactaccaccactgcatctgcagctgctcattgcattttgcatccactccacactcatctactactactactactcaactgagcttaattagcctaattagccacttgacaacccccactaattagccagtgattagtgtggctaattgacaaccaatggtgtcaaaaatgagaatattactacataaacatcaaccaaatgttgctgtcctgcctttctgccaggacaggactacactgatctcactgttagagcatgtgaggattatgaattgttgattgcttcttggaggatgtctcctctttggaaaactacttaccacca
More
|
||||||||||
| CDS seq | atgagtgtggagtggatgcaaaatgcaatgagcagctgcagatgcagtggtggtagtagaagaagaagtgaggtgaaggagctgggtaggagaccaaatccatcatcaccaccacctgacctcaccaaattcctcacactagcttgtgtggtggtgccttgccatgtccatgtccacccacctgcccccttgcttcttctcccacctcgcctcctcccgctgcgctctccgatgccgccgcctcgccgccatggccatggtggtgcccgcctcctcgtgttcttgctgccggtgctgctcctcctgcggacggcggcgacgaacaccttgtccaccttcgccatggccaaggcggagtccacgacgatagtgtgcgcgctgctgccgtcggcggcgtcgccgctgctcgtggacctcaattgcacggaggccggcggcgaccacgagcggcaggagacgtacccgtcgtcgcaccccttctccgcgctcgccggcggcgaccacttcctctgcgcggtcggcccgtcggcgctccgcgccggcgacgtcgcgatgcggtggtgggatctgtccaagaaccggacgaacacgccggagacgaacgggacgaaggatggtggcgggaggtcgaagagggtgtatctcggcccgccgatccaggcgctgtcctccggtgggtaccgtgtctgcggcgtgctctccagcggcgagctccactgctggcggtggcgcgggctgaagatccccgacgggctccggttcgtctccgtcgccgtcggcgactggttcgtgtgcgccatccaggcggcgcggccggcgtccatccggtgcttcggcaacgacacggaggcggtaagctcggcgccggagggcgggagcttcgacgtggtcgccgcgcacggccgccgcgcgtgcgcgctgtccacgtccggcgcgctctcgtgctggggccacggcgcgccgctggtgggcggcggcgaggacgaggccaccaccgggtacgcggcgctggcattgggcaccgacggcgtctgcgggctgcgcaccaacagcaccatccgctgcttcggcgacggcgtggcgccgccgccggacagcctcgcggggttccagtacgtcgacgtccaggcgcacgggagcgtcttctgcggcgtcctcatggcgaactactccctcgtctgctggggcgggcacgagttcaacgccaccaaccgcctggtgttcgaccgcgtcctcccgggcccgtgcgtgaccatgtcgtcgtgcaggtgcggcgtcctgccgggctcggccaacctctgcgcctccggtcgctgcatctgcgtggactgcgcgttcgagctcaacgtcgccacgcccaatgcgtcgtcgctcggccctggccccggcaagagcagcagcaagcggagcaggatcatctgggtcgccgtcgccgcgggcgcgttcctcgtgctgctcgtggcattgcagttcgcgctgctcatgtggtgtcgccggcggcggcggcgcggcaggggcgggcaggcggaccaagcggcggcgatgtcgctgatgctgccgcggcatgggtcgagcaaggggccgggcagcgtggtggagcatttcgccctggaggcgctccaggcggcgacggacgggttctccgacgagcggcggatcggatcggggagcttcgggtcggtgtaccgcggcacgctgaccgacgggcgggaggtggcgatcaagcgcgccgaggaccaggcgaagtcgtcgagctcggcggcgaggccggcgcggcggcgcgacagggagacggcgttcaactcggagctcaccgcgctggcgcgcgccaaccacaagaacatcgtgtgcctcctcggctgctgcgccgacgccggcgagcgcgtgctggtgtacgagtacatggcgaacggcaccctccacgaccagctccacggccggagccccatggcgccgccggtgtcggcgtggcgcggccgcctcaccatcgcgctcgacgcggcgcgcggcatcgagtacatgcacgtctacgccgtgcccaacatcatccaccgcgacatcaagtcggccaacatcctgctcgacgactcgtggacggccaagatcgccgacttcggcctctcctccatcctagatccggccaccgccggcggcggcggcggcggcggcgaggggagcagctcgaggccgctgtacacgggcggcacggtggggtacatggacccggagtactaccggatgcagcacctgacggacaagagcgacgtgtacagcttcgggGtggtgctcctggagctcatgtccgggtgccgcgtcgtgcagcgctacgccgagagcgtgacgcccaagaacgtggtggagttcgccgtgccgcacatcctcgccgacgagctggcgcgggtgctcgacccgcgcatcccgccgccgacgccgcacgaggccgacgcgctcgcctacgtcggctacctcgccgccgactgcgtcggccccgtcggctgcgaccgcccgtccatgaccgaggtcgtcgacgccctggagcgcgccctcgccgcctgcgccgccgcgtcgctctcccgctccggcaccgtcaccggcgccggccgccgcgccctctcccgctccgggacagaccagtttgacctcactgacactgactag
More
|
||||||||||
| Protein seq | MSVEWMQNAMSSCRCSGGSRRRSEVKELGRRPNPSSPPPDLTKFLTLACVVVPCHVHVHPPAPLLLLPPRLLPLRSPMPPPRRHGHGGARLLVFLLPVLLLLRTAATNTLSTFAMAKAESTTIVCALLPSAASPLLVDLNCTEAGGDHERQETYPSSHPFSALAGGDHFLCAVGPSALRAGDVAMRWWDLSKNRTNTPETNGTKDGGGRSKRVYLGPPIQALSSGGYRVCGVLSSGELHCWRWRGLKIPDGLRFVSVAVGDWFVCAIQAARPASIRCFGNDTEAVSSAPEGGSFDVVAAHGRRACALSTSGALSCWGHGAPLVGGGEDEATTGYAALALGTDGVCGLRTNSTIRCFGDGVAPPPDSLAGFQYVDVQAHGSVFCGVLMANYSLVCWGGHEFNATNRLVFDRVLPGPCVTMSSCRCGVLPGSANLCASGRCICVDCAFELNVATPNASSLGPGPGKSSSKRSRIIWVAVAAGAFLVLLVALQFALLMWCRRRRRRGRGGQADQAAAMSLMLPRHGSSKGPGSVVEHFALEALQAATDGFSDERRIGSGSFGSVYRGTLTDGREVAIKRAEDQAKSSSSAARPARRRDRETAFNSELTALARANHKNIVCLLGCCADAGERVLVYEYMANGTLHDQLHGRSPMAPPVSAWRGRLTIALDAARGIEYMHVYAVPNIIHRDIKSANILLDDSWTAKIADFGLSSILDPATAGGGGGGGEGSSSRPLYTGGTVGYMDPEYYRMQHLTDKSDVYSFGVVLLELMSGCRVVQRYAESVTPKNVVEFAVPHILADELARVLDPRIPPPTPHEADALAYVGYLAADCVGPVGCDRPSMTEVVDALERALAACAAASLSRSGTVTGAGRRALSRSGTDQFDLTDTD |
||||||||||
| Function | Serine/threonine-protein kinase-like protein CCR4 [UniProtKB/Swiss-Prot:Q9FIJ6] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsGoSa_11g0007580 | OsGoSa_11g0007580.01 | Chr11 | 6580273 | 6583197 | - | NAM | ||
| CDS seq | atgagtgtggagtggatgcaaaatgcaatgagcagctgcagatgcagtggtggtagtagaagaagaagtgaggtgaaggagctgggtaggagaccaaatccatcatcaccaccacctgacctcaccaaattcctcacactagcttgtgtggtggtgccttgccatgtccatgtccacccacctgcccccttgcttcttctcccacctcgcctcctcccgctgcgctctccgatgccgccgcctcgccgccatggccatggtggtgcccgcctcctcgtgttcttgctgccggtgctgctcctcctgcggacggcggcgacgaacaccttgtccaccttcgccatggccaaggcggagtccacgacgatagtgtgcgcgctgctgccgtcggcggcgtcgccgctgctcgtggacctcaattgcacggaggccggcggcgaccacgagcggcaggagacgtacccgtcgtcgcaccccttctccgcgctcgccggcggcgaccacttcctctgcgcggtcggcccgtcggcgctccgcgccggcgacgtcgcgatgcggtggtgggatctgtccaagaaccggacgaacacgccggagacgaacgggacgaaggatggtggcgggaggtcgaagagggtgtatctcggcccgccgatccaggcgctgtcctccggtgggtaccgtgtctgcggcgtgctctccagcggcgagctccactgctggcggtggcgcgggctgaagatccccgacgggctccggttcgtctccgtcgccgtcggcgactggttcgtgtgcgccatccaggcggcgcggccggcgtccatccggtgcttcggcaacgacacggaggcggtaagctcggcgccggagggcgggagcttcgacgtggtcgccgcgcacggccgccgcgcgtgcgcgctgtccacgtccggcgcgctctcgtgctggggccacggcgcgccgctggtgggcggcggcgaggacgaggccaccaccgggtacgcggcgctggcattgggcaccgacggcgtctgcgggctgcgcaccaacagcaccatccgctgcttcggcgacggcgtggcgccgccgccggacagcctcgcggggttccagtacgtcgacgtccaggcgcacgggagcgtcttctgcggcgtcctcatggcgaactactccctcgtctgctggggcgggcacgagttcaacgccaccaaccgcctggtgttcgaccgcgtcctcccgggcccgtgcgtgaccatgtcgtcgtgcaggtgcggcgtcctgccgggctcggccaacctctgcgcctccggtcgctgcatctgcgtggactgcgcgttcgagctcaacgtcgccacgcccaatgcgtcgtcgctcggccctggccccggcaagagcagcagcaagcggagcaggatcatctgggtcgccgtcgccgcgggcgcgttcctcgtgctgctcgtggcattgcagttcgcgctgctcatgtggtgtcgccggcggcggcggcgcggcaggggcgggcaggcggaccaagcggcggcgatgtcgctgatgctgccgcggcatgggtcgagcaaggggccgggcagcgtggtggagcatttcgccctggaggcgctccaggcggcgacggacgggttctccgacgagcggcggatcggatcggggagcttcgggtcggtgtaccgcggcacgctgaccgacgggcgggaggtggcgatcaagcgcgccgaggaccaggcgaagtcgtcgagctcggcggcgaggccggcgcggcggcgcgacagggagacggcgttcaactcggagctcaccgcgctggcgcgcgccaaccacaagaacatcgtgtgcctcctcggctgctgcgccgacgccggcgagcgcgtgctggtgtacgagtacatggcgaacggcaccctccacgaccagctccacggccggagccccatggcgccgccggtgtcggcgtggcgcggccgcctcaccatcgcgctcgacgcggcgcgcggcatcgagtacatgcacgtctacgccgtgcccaacatcatccaccgcgacatcaagtcggccaacatcctgctcgacgactcgtggacggccaagatcgccgacttcggcctctcctccatcctagatccggccaccgccggcggcggcggcggcggcggcgaggggagcagctcgaggccgctgtacacgggcggcacggtggggtacatggacccggagtactaccggatgcagcacctgacggacaagagcgacgtgtacagcttcgggGtggtgctcctggagctcatgtccgggtgccgcgtcgtgcagcgctacgccgagagcgtgacgcccaagaacgtggtggagttcgccgtgccgcacatcctcgccgacgagctggcgcgggtgctcgacccgcgcatcccgccgccgacgccgcacgaggccgacgcgctcgcctacgtcggctacctcgccgccgactgcgtcggccccgtcggctgcgaccgcccgtccatgaccgaggtcgtcgacgccctggagcgcgccctcgccgcctgcgccgccgcgtcgctctcccgctccggcaccgtcaccggcgccggccgccgcgccctctcccgctccgggacagaccagtttgacctcactgacactgactag
More
|
|||||||
| Protein seq | MSVEWMQNAMSSCRCSGGSRRRSEVKELGRRPNPSSPPPDLTKFLTLACVVVPCHVHVHPPAPLLLLPPRLLPLRSPMPPPRRHGHGGARLLVFLLPVLLLLRTAATNTLSTFAMAKAESTTIVCALLPSAASPLLVDLNCTEAGGDHERQETYPSSHPFSALAGGDHFLCAVGPSALRAGDVAMRWWDLSKNRTNTPETNGTKDGGGRSKRVYLGPPIQALSSGGYRVCGVLSSGELHCWRWRGLKIPDGLRFVSVAVGDWFVCAIQAARPASIRCFGNDTEAVSSAPEGGSFDVVAAHGRRACALSTSGALSCWGHGAPLVGGGEDEATTGYAALALGTDGVCGLRTNSTIRCFGDGVAPPPDSLAGFQYVDVQAHGSVFCGVLMANYSLVCWGGHEFNATNRLVFDRVLPGPCVTMSSCRCGVLPGSANLCASGRCICVDCAFELNVATPNASSLGPGPGKSSSKRSRIIWVAVAAGAFLVLLVALQFALLMWCRRRRRRGRGGQADQAAAMSLMLPRHGSSKGPGSVVEHFALEALQAATDGFSDERRIGSGSFGSVYRGTLTDGREVAIKRAEDQAKSSSSAARPARRRDRETAFNSELTALARANHKNIVCLLGCCADAGERVLVYEYMANGTLHDQLHGRSPMAPPVSAWRGRLTIALDAARGIEYMHVYAVPNIIHRDIKSANILLDDSWTAKIADFGLSSILDPATAGGGGGGGEGSSSRPLYTGGTVGYMDPEYYRMQHLTDKSDVYSFGVVLLELMSGCRVVQRYAESVTPKNVVEFAVPHILADELARVLDPRIPPPTPHEADALAYVGYLAADCVGPVGCDRPSMTEVVDALERALAACAAASLSRSGTVTGAGRRALSRSGTDQFDLTDTD
More
|
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.802711 | 12.008757 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_11g0222000 | RBH | 0.505211 | 0.463569 | 2.151984 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os11g11490 | RBH | 0.193808 | 0.161055 | 0.323929 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os11g0222000 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_11g0007670 | RBH | 0.204942 | 5.399616 | 2.285321 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_11g0007770 | RBH | 0.002032 | 2.183220 | 0.108851 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_11g0007570 | RBH | 0.143393 | 2.025931 | 0.450867 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_11g0007550 | RBH | 0.024331 | 0.201250 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_11g0007560 | RBH | 0.394733 | 7.152780 | 1.332788 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_11G0102200 | RBH | 4.596323 | 9.9259185 | 1.799914 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_11g0007570 | RBH | 0.072968 | 0.241326 | 0.092945 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_11G0108800 | RBH | 6.088358 | 5.174087 | 6.236616 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_11g0007720 | RBH | 0.021221 | 0.015096 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_11g0007560 | RBH | 0.043754 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_11g0007810 | SBH | 0.000000 | 10.839262 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_11g0007660 | RBH | 0.0 | 0.0 | 0.063914 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_11g0007690 | RBH | 0.177636 | 2.870628 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_11G007720 | RBH | 0.0 | 0.928404 | 0.550272 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_11g0007530 | RBH | 0.161071 | 5.073269 | 0.177349 |
