Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsGoSa_10g0015450 | OGI:10058040 | 15/16 | GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | Chr10:20685106-20685747 | ||||||||
| Gene Symbol | qPSR10 | ||||||||||
| DNA seq | atggcgggtgccatgaccatgagtcgccgccgtctctcccacgcgctcctcctcgtgctcgcgatcctccccaacctggccgctctcgccgtcgccgccggcggcggcagcggaggcggtggcttcttcccgcaccggtccctcctccagtcctccagctgccagccgagcggcgccatcaccggaacgtccggcgactgcaacgcggacaacggctccgagtgctgccaggacggcgtccagtacacgacgtacgcctgctcgccgcccgtcgccgccggcggcaccggcaccgcggccctcctcacgctcaacagcttcgccgacggcggggacggcggcagcgcgccgtcctgcacggggaggttctacgacgacggccagctggtggtggcgctgtccacggggtggttcgacgggaggagccggtgcgagaaggacgtcgtcatccgggcgagcggcggcgcgtccgtgacggccatggtcgtcgacgagtgcgactcccagcgcggctgcgacagcgaccacaacttcgagccgccgtgccggaacaacatcgtcgacgggtcgccggcggtgtgggacgcgctggggctcaacaaggacgacggcgaggcccagatcacctggtccgatgcttga
More
|
||||||||||
| CDS seq | atggcgggtgccatgaccatgagtcgccgccgtctctcccacgcgctcctcctcgtgctcgcgatcctccccaacctggccgctctcgccgtcgccgccggcggcggcagcggaggcggtggcttcttcccgcaccggtccctcctccagtcctccagctgccagccgagcggcgccatcaccggaacgtccggcgactgcaacgcggacaacggctccgagtgctgccaggacggcgtccagtacacgacgtacgcctgctcgccgcccgtcgccgccggcggcaccggcaccgcggccctcctcacgctcaacagcttcgccgacggcggggacggcggcagcgcgccgtcctgcacggggaggttctacgacgacggccagctggtggtggcgctgtccacggggtggttcgacgggaggagccggtgcgagaaggacgtcgtcatccgggcgagcggcggcgcgtccgtgacggccatggtcgtcgacgagtgcgactcccagcgcggctgcgacagcgaccacaacttcgagccgccgtgccggaacaacatcgtcgacgggtcgccggcggtgtgggacgcgctggggctcaacaaggacgacggcgaggcccagatcacctggtccgatgcttga
More
|
||||||||||
| Protein seq | MAGAMTMSRRRLSHALLLVLAILPNLAALAVAAGGGSGGGGFFPHRSLLQSSSCQPSGAITGTSGDCNADNGSECCQDGVQYTTYACSPPVAAGGTGTAALLTLNSFADGGDGGSAPSCTGRFYDDGQLVVALSTGWFDGRSRCEKDVVIRASGGASVTAMVVDECDSQRGCDSDHNFEPPCRNNIVDGSPAVWDALGLNKDDGEAQITWSDA |
||||||||||
| Function | Ripening-related protein 3 [UniProtKB/Swiss-Prot:Q9FWT5] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsGoSa_10g0015450 | OsGoSa_10g0015450.01 | Chr10 | 20685106 | 20685747 | + | NAM | ||
| CDS seq | atggcgggtgccatgaccatgagtcgccgccgtctctcccacgcgctcctcctcgtgctcgcgatcctccccaacctggccgctctcgccgtcgccgccggcggcggcagcggaggcggtggcttcttcccgcaccggtccctcctccagtcctccagctgccagccgagcggcgccatcaccggaacgtccggcgactgcaacgcggacaacggctccgagtgctgccaggacggcgtccagtacacgacgtacgcctgctcgccgcccgtcgccgccggcggcaccggcaccgcggccctcctcacgctcaacagcttcgccgacggcggggacggcggcagcgcgccgtcctgcacggggaggttctacgacgacggccagctggtggtggcgctgtccacggggtggttcgacgggaggagccggtgcgagaaggacgtcgtcatccgggcgagcggcggcgcgtccgtgacggccatggtcgtcgacgagtgcgactcccagcgcggctgcgacagcgaccacaacttcgagccgccgtgccggaacaacatcgtcgacgggtcgccggcggtgtgggacgcgctggggctcaacaaggacgacggcgaggcccagatcacctggtccgatgcttga
More
|
|||||||
| Protein seq | MAGAMTMSRRRLSHALLLVLAILPNLAALAVAAGGGSGGGGFFPHRSLLQSSSCQPSGAITGTSGDCNADNGSECCQDGVQYTTYACSPPVAAGGTGTAALLTLNSFADGGDGGSAPSCTGRFYDDGQLVVALSTGWFDGRSRCEKDVVIRASGGASVTAMVVDECDSQRGCDSDHNFEPPCRNNIVDGSPAVWDALGLNKDDGEAQITWSDA
More
|
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 4.754796 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_10g0490100 | RBH | 0.0 | 0.452486 | 0.718935 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os10g34840 | RBH | 0.0 | 0.282232 | 0.171627 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os10g0490100 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_10g0015510 | RBH | 0.0 | 13.845852 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_10g0015750 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_10g0015180 | RBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_10g0015510 | RBH | 0.0 | 0.069062 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_10g0015450 | RBH | 0.0 | 3.383920 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_10G0307600 | RBH | 0.366246 | 81.5873145 | 0.063914 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_10g0015390 | RBH | 0.0 | 2.594445 | 0.248026 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_10G0330200 | RBH | 0.6874175 | 60.385656 | 0.0731205 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_10g0015150 | RBH | 0.0 | 0.189266 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_10g0015050 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_10g0015460 | SBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_10g0015160 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_10g0015690 | RBH | 0.0 | 12.387350 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_10G015320 | RBH | 0.0 | 9.651937 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_10g0015340 | SBH | 0.788138 | 0.0 | 0.0 |
