Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsGoSa_10g0015330 | OGI:10057870 | 16/16 | GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | Chr10:20614571-20616806 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | atggtgaagtattggggccagcggctatggcggccgccggcgccggccgccgccacgaccgttcacctggcctccctcctccagtcgtgcggccgcgccggcgacctccgccggggccgcctcctccacgcgcggctcgtgctctccggcgcggccgccgcgtccaccttcctcgccaaccacctcatcaccatgtactcccactgcgccgacctcgcctccgcgctccgcctcttcgccgccatgccccgccgcaacgccgtctcctggaccaccctcgtctcgggcctctcccagaacctcatgcacgccgacgcgctcgccgccttcgccgccatgcgccgcgcgggcgtcgcgcccacgcggttcgcgctctccagcgccgcgcgcgccgcggccgcgctcGgggccccgctcccgggcgcgcagctgcactgcgtcggcgtcaggctcggcttcgacaccgagctcttcgtcgcgagcaacctcgcggatatgtactccaagtgcgggctcttgtctgaagcatgcagggtgttcgaccaaatgccccagaaggatgccgttgcctggacagccatgatcgatgggtatgccaagaatGggagccttgaggcggctgttttgtctttccgggacatgaaacgcgagggactggttggtgctgatcagcatgtgttctgcagtgtgttgagtgcgtcgggagggctcaaggatgggtggctcagcaaaagcatccattgttgtgtgacaaaggcagggtttgaactggaggttgctgtgaggaatgcactcattgacatgtacgctaagtccatggatgtggagagtgcctctcgcgtgctgaagattgaccctggaggttggaatgttgtatcaggcacctctatgattgatggttacattgagaccgattgtgttgaggaggcccttgtaatatatgttgaactgcggagacaaggagtcgagcctaacgaattcactttctcgagcatgatcaagggctgtgccatgcaggctctgcttgagcaaggtgctcaattgcatgctcaagtgatcaaaacggatttgatcagggactccttcgttggttccaccctagtggatatgtatgggaagtgtggccttataagtttgtccatgcagttatttaatgagattgaatacagaacagatattgcttggaatgcggtaatcaatgtattcgcacaacatggtcatggaagggaagcaatccaagctttcgataggatgatctatagtggtatcaggccaaatcacattgcatttgtcagcctgctcacagcatgcagtcatgctggattagtggatgaaggactcaagtatttttactctatgaaggaagcccatggtattgagcctaaagaggagcactattcctgtatcattgatacgtatggtcgagctgggagattagatgaagcatataagttcatatctgagatgcccatcaagcccaatgcctatggctggtgctctttgcttggagcttgccgtatgcgagggagcaaggagctGggggaggttgcggcacaaaatcttatgaagcttgaaccaggtaacactggtattcatgtgtccctttctgggatctatgcatccctgggccaatgggaggatgtgaaggcagtcaggaagttgatgagagatagcaggattaagaaacttcctggttttagctgggtcgattctaacaaaaaaacccatgtgtttggatccgaggattggtcacatccacagcagaaggacatatatgaaaaacttgaggaactcactacgaggataaaggaggaaggttatatcccggatacaagctttttgccatgtaatttagaagacatcgcaaaagagaggattcttcgttatcacagtgagagaatagctgtagcttttgctttgataagcatgccagctacaaaaccaatcattgtgaagaagaatttgcggatatgtatagactgccacactgcattcaagttcatttgtaaggtagaaagaagggatattattgtgagagataattccaggtttcaccattttgtgaatggtaggtgttcctgtggagattactggtgattaactcttatcctttttcgagctagaaaggtacaataggaacttctacactgctggcaactgacctttttacagtgcttaaatttccatgttagttgttactgttttttttatgtacttgtatacagttgctagttgt
More
|
||||||||||
| CDS seq | atggtgaagtattggggccagcggctatggcggccgccggcgccggccgccgccacgaccgttcacctggcctccctcctccagtcgtgcggccgcgccggcgacctccgccggggccgcctcctccacgcgcggctcgtgctctccggcgcggccgccgcgtccaccttcctcgccaaccacctcatcaccatgtactcccactgcgccgacctcgcctccgcgctccgcctcttcgccgccatgccccgccgcaacgccgtctcctggaccaccctcgtctcgggcctctcccagaacctcatgcacgccgacgcgctcgccgccttcgccgccatgcgccgcgcgggcgtcgcgcccacgcggttcgcgctctccagcgccgcgcgcgccgcggccgcgctcGgggccccgctcccgggcgcgcagctgcactgcgtcggcgtcaggctcggcttcgacaccgagctcttcgtcgcgagcaacctcgcggatatgtactccaagtgcgggctcttgtctgaagcatgcagggtgttcgaccaaatgccccagaaggatgccgttgcctggacagccatgatcgatgggtatgccaagaatGggagccttgaggcggctgttttgtctttccgggacatgaaacgcgagggactggttggtgctgatcagcatgtgttctgcagtgtgttgagtgcgtcgggagggctcaaggatgggtggctcagcaaaagcatccattgttgtgtgacaaaggcagggtttgaactggaggttgctgtgaggaatgcactcattgacatgtacgctaagtccatggatgtggagagtgcctctcgcgtgctgaagattgaccctggaggttggaatgttgtatcaggcacctctatgattgatggttacattgagaccgattgtgttgaggaggcccttgtaatatatgttgaactgcggagacaaggagtcgagcctaacgaattcactttctcgagcatgatcaagggctgtgccatgcaggctctgcttgagcaaggtgctcaattgcatgctcaagtgatcaaaacggatttgatcagggactccttcgttggttccaccctagtggatatgtatgggaagtgtggccttataagtttgtccatgcagttatttaatgagattgaatacagaacagatattgcttggaatgcggtaatcaatgtattcgcacaacatggtcatggaagggaagcaatccaagctttcgataggatgatctatagtggtatcaggccaaatcacattgcatttgtcagcctgctcacagcatgcagtcatgctggattagtggatgaaggactcaagtatttttactctatgaaggaagcccatggtattgagcctaaagaggagcactattcctgtatcattgatacgtatggtcgagctgggagattagatgaagcatataagttcatatctgagatgcccatcaagcccaatgcctatggctggtgctctttgcttggagcttgccgtatgcgagggagcaaggagctGggggaggttgcggcacaaaatcttatgaagcttgaaccaggtaacactggtattcatgtgtccctttctgggatctatgcatccctgggccaatgggaggatgtgaaggcagtcaggaagttgatgagagatagcaggattaagaaacttcctggttttagctgggtcgattctaacaaaaaaacccatgtgtttggatccgaggattggtcacatccacagcagaaggacatatatgaaaaacttgaggaactcactacgaggataaaggaggaaggttatatcccggatacaagctttttgccatgtaatttagaagacatcgcaaaagagaggattcttcgttatcacagtgagagaatagctgtagcttttgctttgataagcatgccagctacaaaaccaatcattgtgaagaagaatttgcggatatgtatagactgccacactgcattcaagttcatttgtaaggtagaaagaagggatattattgtgagagataattccaggtttcaccattttgtgaatggtaggtgttcctgtggagattactggtga
More
|
||||||||||
| Protein seq | MVKYWGQRLWRPPAPAAATTVHLASLLQSCGRAGDLRRGRLLHARLVLSGAAAASTFLANHLITMYSHCADLASALRLFAAMPRRNAVSWTTLVSGLSQNLMHADALAAFAAMRRAGVAPTRFALSSAARAAAALGAPLPGAQLHCVGVRLGFDTELFVASNLADMYSKCGLLSEACRVFDQMPQKDAVAWTAMIDGYAKNGSLEAAVLSFRDMKREGLVGADQHVFCSVLSASGGLKDGWLSKSIHCCVTKAGFELEVAVRNALIDMYAKSMDVESASRVLKIDPGGWNVVSGTSMIDGYIETDCVEEALVIYVELRRQGVEPNEFTFSSMIKGCAMQALLEQGAQLHAQVIKTDLIRDSFVGSTLVDMYGKCGLISLSMQLFNEIEYRTDIAWNAVINVFAQHGHGREAIQAFDRMIYSGIRPNHIAFVSLLTACSHAGLVDEGLKYFYSMKEAHGIEPKEEHYSCIIDTYGRAGRLDEAYKFISEMPIKPNAYGWCSLLGACRMRGSKELGEVAAQNLMKLEPGNTGIHVSLSGIYASLGQWEDVKAVRKLMRDSRIKKLPGFSWVDSNKKTHVFGSEDWSHPQQKDIYEKLEELTTRIKEEGYIPDTSFLPCNLEDIAKERILRYHSERIAVAFALISMPATKPIIVKKNLRICIDCHTAFKFICKVERRDIIVRDNSRFHHFVNGRCSCGDYW |
||||||||||
| Function | Pentatricopeptide repeat-containing protein At4g14850 [UniProtKB/Swiss-Prot:Q0WSH6] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsGoSa_10g0015330 | OsGoSa_10g0015330.01 | Chr10 | 20614571 | 20616806 | + | NAM | ||
| CDS seq | atggtgaagtattggggccagcggctatggcggccgccggcgccggccgccgccacgaccgttcacctggcctccctcctccagtcgtgcggccgcgccggcgacctccgccggggccgcctcctccacgcgcggctcgtgctctccggcgcggccgccgcgtccaccttcctcgccaaccacctcatcaccatgtactcccactgcgccgacctcgcctccgcgctccgcctcttcgccgccatgccccgccgcaacgccgtctcctggaccaccctcgtctcgggcctctcccagaacctcatgcacgccgacgcgctcgccgccttcgccgccatgcgccgcgcgggcgtcgcgcccacgcggttcgcgctctccagcgccgcgcgcgccgcggccgcgctcGgggccccgctcccgggcgcgcagctgcactgcgtcggcgtcaggctcggcttcgacaccgagctcttcgtcgcgagcaacctcgcggatatgtactccaagtgcgggctcttgtctgaagcatgcagggtgttcgaccaaatgccccagaaggatgccgttgcctggacagccatgatcgatgggtatgccaagaatGggagccttgaggcggctgttttgtctttccgggacatgaaacgcgagggactggttggtgctgatcagcatgtgttctgcagtgtgttgagtgcgtcgggagggctcaaggatgggtggctcagcaaaagcatccattgttgtgtgacaaaggcagggtttgaactggaggttgctgtgaggaatgcactcattgacatgtacgctaagtccatggatgtggagagtgcctctcgcgtgctgaagattgaccctggaggttggaatgttgtatcaggcacctctatgattgatggttacattgagaccgattgtgttgaggaggcccttgtaatatatgttgaactgcggagacaaggagtcgagcctaacgaattcactttctcgagcatgatcaagggctgtgccatgcaggctctgcttgagcaaggtgctcaattgcatgctcaagtgatcaaaacggatttgatcagggactccttcgttggttccaccctagtggatatgtatgggaagtgtggccttataagtttgtccatgcagttatttaatgagattgaatacagaacagatattgcttggaatgcggtaatcaatgtattcgcacaacatggtcatggaagggaagcaatccaagctttcgataggatgatctatagtggtatcaggccaaatcacattgcatttgtcagcctgctcacagcatgcagtcatgctggattagtggatgaaggactcaagtatttttactctatgaaggaagcccatggtattgagcctaaagaggagcactattcctgtatcattgatacgtatggtcgagctgggagattagatgaagcatataagttcatatctgagatgcccatcaagcccaatgcctatggctggtgctctttgcttggagcttgccgtatgcgagggagcaaggagctGggggaggttgcggcacaaaatcttatgaagcttgaaccaggtaacactggtattcatgtgtccctttctgggatctatgcatccctgggccaatgggaggatgtgaaggcagtcaggaagttgatgagagatagcaggattaagaaacttcctggttttagctgggtcgattctaacaaaaaaacccatgtgtttggatccgaggattggtcacatccacagcagaaggacatatatgaaaaacttgaggaactcactacgaggataaaggaggaaggttatatcccggatacaagctttttgccatgtaatttagaagacatcgcaaaagagaggattcttcgttatcacagtgagagaatagctgtagcttttgctttgataagcatgccagctacaaaaccaatcattgtgaagaagaatttgcggatatgtatagactgccacactgcattcaagttcatttgtaaggtagaaagaagggatattattgtgagagataattccaggtttcaccattttgtgaatggtaggtgttcctgtggagattactggtga
More
|
|||||||
| Protein seq | MVKYWGQRLWRPPAPAAATTVHLASLLQSCGRAGDLRRGRLLHARLVLSGAAAASTFLANHLITMYSHCADLASALRLFAAMPRRNAVSWTTLVSGLSQNLMHADALAAFAAMRRAGVAPTRFALSSAARAAAALGAPLPGAQLHCVGVRLGFDTELFVASNLADMYSKCGLLSEACRVFDQMPQKDAVAWTAMIDGYAKNGSLEAAVLSFRDMKREGLVGADQHVFCSVLSASGGLKDGWLSKSIHCCVTKAGFELEVAVRNALIDMYAKSMDVESASRVLKIDPGGWNVVSGTSMIDGYIETDCVEEALVIYVELRRQGVEPNEFTFSSMIKGCAMQALLEQGAQLHAQVIKTDLIRDSFVGSTLVDMYGKCGLISLSMQLFNEIEYRTDIAWNAVINVFAQHGHGREAIQAFDRMIYSGIRPNHIAFVSLLTACSHAGLVDEGLKYFYSMKEAHGIEPKEEHYSCIIDTYGRAGRLDEAYKFISEMPIKPNAYGWCSLLGACRMRGSKELGEVAAQNLMKLEPGNTGIHVSLSGIYASLGQWEDVKAVRKLMRDSRIKKLPGFSWVDSNKKTHVFGSEDWSHPQQKDIYEKLEELTTRIKEEGYIPDTSFLPCNLEDIAKERILRYHSERIAVAFALISMPATKPIIVKKNLRICIDCHTAFKFICKVERRDIIVRDNSRFHHFVNGRCSCGDYW
More
|
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.837260 | 2.805198 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_10g0488900 | RBH | 0.000000 | 0.403181 | 0.480448 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os10g34720 | RBH | 0.138141 | 0.225937 | 0.068697 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os10g0488900 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_10g0015390 | RBH | 0.169924 | 0.0 | 0.555998 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_10g0015620 | RBH | 0.0 | 0.480735 | 0.285240 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_10g0015060 | RBH | 0.376696 | 0.0 | 1.431517 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_10g0015400 | RBH | 0.047840 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_10g0015330 | RBH | 3.224667 | 1.354037 | 1.666178 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_10G0306000 | RBH | 5.72211 | 11.8103 | 17.344778 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_10g0015270 | RBH | 0.021636 | 0.071496 | 0.109142 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_10G0328600 | RBH | 5.285426 | 8.4920085 | 22.512081 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_10g0015030 | RBH | 0.038890 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_10g0014930 | RBH | 0.215821 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_10g0015040 | RBH | 0.081889 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_10g0015570 | RBH | 0.0 | 0.620157 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_10G015200 | RBH | 0.0 | 0.397777 | 0.317916 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_10g0015270 | RBH | 0.425790 | 1.767917 | 0.349872 |
