Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsGoSa_10g0012000 | OGI:10049050 | 15/16 | GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | Chr10:17425978-17427685 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ctaaagtgccgcaggcgcgaccgcgccgacattctccgcctcctggggctcctccacgaggccctcgtcgtcgtcaactgcttcttctccagcacgagcgtcgccgaggaggagtacctccgtggccatcgctgacggtggcgtcgcctgactcgcctccagggcaggaacatgggcgtgctgcagagagcaccccatgactccgccggacaacttcaccgaagatgatgaatgtatccagccgcgacgcctatcttgctgagggaaaaagctggggaggcggtgccggtgctcgtcgtcggcggagccgcccccaacgccgccgccgccgccgccgctgccgctgccgcctccgccgcctccaagtcccgatccctcggcgagcagctccatcccgaggacggctgatctggtgggcgcgggggggcaggggacctcgaagacaaagttgacggcatcctcatccgagaggatgtggcgtcccgctcccgctcgcgcgccgagggtcttgtcgacgacgtcttcaacgggggccgcgtcctcgggcttgtcggagccgttgcctccgggaggcgcggtggtgttgggatcgtcgacctccgcgaagagctcacggacgccttcgagaggatcctcgatgggcggatcgctcgccgtcacccgaactcgccgtgcttctatcgcgagcgggggaacgcgtgcacgagcaatacggagagtggtttccccggcgaactcccgtttgagggggaaccgcaccgaggaaggccgaggtgctctgcccttgccgcgcccgcgtccatcgacgggcagtgaagcgcccgcaccgattcctatccgattcatttctcgaaatggtggaggcgtggagcggaggggaggggaggagggtgttcttggcgtggcgaggaagcgggaggaagaggcttcgaacgctcgaggacgaggacccgttatataaagggagaaatgacgaaactcactgacacgtgggaccaggtagcacgtcaaagctcaaccgtcggatggaaatagtgagacggttagattcttcttgggggggcaaactggtaaaaattaccttgaagaaaactaatttcagtcagtgttacacttgtggggcgggttaatgaccttggttgggcccacatgtcatacaaagatagacttggatgatacagtcatcttgcctacgtggcggtggcgccgccgccgatttcttgcaaaagcggccatgcgcccgcgtgaacaccggcgactcgtcctcccattcccccacaacctccgccttgcctttccccgcgccgccaccaccatcgccaccggcgccatcccttcccctcgtcgccacctccacctccacctccaccttgccgacctcacacgacctctcgtctcgccgcgccgcgaccaggccaaccccggcccgacgagtagctcggtctcggtcgccgccgtccgccgagcgcaccacccgctcctccgagcccggctgatagaGggggcgagggcatggccgacggcgccggcaccgggagatcGgggggaagaggagaAGaccgggacgaacaagcacgggctcgtgcccgaagacctgggtctcctcgacatcctcgacgacaagcacacgcaagcgcgcccgcgaactcgacacgagttctcgtctcgccgcgtcccggccccaatcggcgccaaccccgccgatcat
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| CDS seq | atgatcggcggggttggcgccgattggggccgggacgcggcgagacgagaactcgtgtcgagttcgcgggcgcgcttgcgtgtgcttgtcgtcgaggatgtcgaggagacccaggtcttcgggcacgagcccgtgcttgttcgtcccggtCTtctcctcttcccccCgatctcccggtgccggcgccgtcggccatgccctcgccccCtctatcagccgggctcggaggagcgggtggtgcgctcggcggacggcggcgaccgagaccgagctactcgtcgggccggggttggcctggtcgcggcgcggcgagacgagaggtcgtgtgaggtcggcaaggtggaggtggaggtggaggtggcgacgaggggaagggatggcgccggtggcgatggtggtggcggcgcggggaaaggcaaggcggaggttgtgggggaatgggaggacgagtcgccggtgttcacgcgggcgcatggccgcttttgcaagaaatcggcggcggcgccaccgccaccgttcgaagcctcttcctcccgcttcctcgccacgccaagaacaccctcctcccctcccctccgctccacgcctccaccatttcgagaaatgaatcggataggaatcggtgcgggcgcttcactgcccgtcgatggacgcgggcgcggcaagggcagagcacctcggccttcctcggtgcggttccccctcaaacgggagttcgccggggaaaccactctccgtattgctcgtgcacgcgttcccccgctcgcgatagaagcacggcgagttcgggtgacggcgagcgatccgcccatcgaggatcctctcgaaggcgtccgtgagctcttcgcggaggtcgacgatcccaacaccaccgcgcctcccggaggcaacggctccgacaagcccgaggacgcggcccccgttgaagacgtcgtcgacaagaccctcggcgcgcgagcgggagcgggacgccacatcctctcggatgaggatgccgtcaactttgtcttcgaggtcccctgcccccccgcgcccaccagatcagccgtcctcgggatggagctgctcgccgagggatcgggacttggaggcggcggaggcggcagcggcagcggcggcggcggcggcggcgttgggggcggctccgccgacgacgagcaccggcaccgcctccccagctttttccctcagcaagataggcgtcgcggctggatacattcatcatcttcggtgaagttgtccggcggagtcatggggtgctctctgcagcacgcccatgttcctgccctggaggcgagtcaggcgacgccaccgtcagcgatggccacggaggtactcctcctcggcgacgctcgtgctggagaagaagcagttgacgacgacgagggcctcgtggaggagccccaggaggcggagaatgtcggcgcggtcgcgcctgcggcactttag
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| Protein seq | MIGGVGADWGRDAARRELVSSSRARLRVLVVEDVEETQVFGHEPVLVRPGLLLFPPISRCRRRRPCPRPLYQPGSEERVVRSADGGDRDRATRRAGVGLVAARRDERSCEVGKVEVEVEVATRGRDGAGGDGGGGAGKGKAEVVGEWEDESPVFTRAHGRFCKKSAAAPPPPFEASSSRFLATPRTPSSPPLRSTPPPFREMNRIGIGAGASLPVDGRGRGKGRAPRPSSVRFPLKREFAGETTLRIARARVPPLAIEARRVRVTASDPPIEDPLEGVRELFAEVDDPNTTAPPGGNGSDKPEDAAPVEDVVDKTLGARAGAGRHILSDEDAVNFVFEVPCPPAPTRSAVLGMELLAEGSGLGGGGGGSGSGGGGGGVGGGSADDEHRHRLPSFFPQQDRRRGWIHSSSSVKLSGGVMGCSLQHAHVPALEASQATPPSAMATEVLLLGDARAGEEAVDDDEGLVEEPQEAENVGAVAPAAL |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsGoSa_10g0012000 | OsGoSa_10g0012000.01 | Chr10 | 17425978 | 17427685 | - | NAM | ||
| CDS seq | atgatcggcggggttggcgccgattggggccgggacgcggcgagacgagaactcgtgtcgagttcgcgggcgcgcttgcgtgtgcttgtcgtcgaggatgtcgaggagacccaggtcttcgggcacgagcccgtgcttgttcgtcccggtCTtctcctcttcccccCgatctcccggtgccggcgccgtcggccatgccctcgccccCtctatcagccgggctcggaggagcgggtggtgcgctcggcggacggcggcgaccgagaccgagctactcgtcgggccggggttggcctggtcgcggcgcggcgagacgagaggtcgtgtgaggtcggcaaggtggaggtggaggtggaggtggcgacgaggggaagggatggcgccggtggcgatggtggtggcggcgcggggaaaggcaaggcggaggttgtgggggaatgggaggacgagtcgccggtgttcacgcgggcgcatggccgcttttgcaagaaatcggcggcggcgccaccgccaccgttcgaagcctcttcctcccgcttcctcgccacgccaagaacaccctcctcccctcccctccgctccacgcctccaccatttcgagaaatgaatcggataggaatcggtgcgggcgcttcactgcccgtcgatggacgcgggcgcggcaagggcagagcacctcggccttcctcggtgcggttccccctcaaacgggagttcgccggggaaaccactctccgtattgctcgtgcacgcgttcccccgctcgcgatagaagcacggcgagttcgggtgacggcgagcgatccgcccatcgaggatcctctcgaaggcgtccgtgagctcttcgcggaggtcgacgatcccaacaccaccgcgcctcccggaggcaacggctccgacaagcccgaggacgcggcccccgttgaagacgtcgtcgacaagaccctcggcgcgcgagcgggagcgggacgccacatcctctcggatgaggatgccgtcaactttgtcttcgaggtcccctgcccccccgcgcccaccagatcagccgtcctcgggatggagctgctcgccgagggatcgggacttggaggcggcggaggcggcagcggcagcggcggcggcggcggcggcgttgggggcggctccgccgacgacgagcaccggcaccgcctccccagctttttccctcagcaagataggcgtcgcggctggatacattcatcatcttcggtgaagttgtccggcggagtcatggggtgctctctgcagcacgcccatgttcctgccctggaggcgagtcaggcgacgccaccgtcagcgatggccacggaggtactcctcctcggcgacgctcgtgctggagaagaagcagttgacgacgacgagggcctcgtggaggagccccaggaggcggagaatgtcggcgcggtcgcgcctgcggcactttag
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| Protein seq | MIGGVGADWGRDAARRELVSSSRARLRVLVVEDVEETQVFGHEPVLVRPGLLLFPPISRCRRRRPCPRPLYQPGSEERVVRSADGGDRDRATRRAGVGLVAARRDERSCEVGKVEVEVEVATRGRDGAGGDGGGGAGKGKAEVVGEWEDESPVFTRAHGRFCKKSAAAPPPPFEASSSRFLATPRTPSSPPLRSTPPPFREMNRIGIGAGASLPVDGRGRGKGRAPRPSSVRFPLKREFAGETTLRIARARVPPLAIEARRVRVTASDPPIEDPLEGVRELFAEVDDPNTTAPPGGNGSDKPEDAAPVEDVVDKTLGARAGAGRHILSDEDAVNFVFEVPCPPAPTRSAVLGMELLAEGSGLGGGGGGSGSGGGGGGVGGGSADDEHRHRLPSFFPQQDRRRGWIHSSSSVKLSGGVMGCSLQHAHVPALEASQATPPSAMATEVLLLGDARAGEEAVDDDEGLVEEPQEAENVGAVAPAAL
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os10g29880 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_10g0011780 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_10g0012100 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_10g0011810 | RBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_10g0012090 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_10g0011820 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_10G0258000 | SBH | 0.023661 | 0.0447305 | 0.0597865 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_10g0011850 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_10G0277300 | SBH | 0 | 0.0732845 | 0.1324065 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_10g0011590 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_10g0011570 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_10g0011910 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_10g0011580 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_10g0012070 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_10G011960 | RBH | 0.0 | 0.0 | 0.245906 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_10g0011900 | RBH | 0.0 | 0.0 | 0.0 |
