Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsGoSa_10g0009490 | OGI:10043390 | 16/16 | GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | Chr10:14979578-14985084 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ctcaatcaattatagtagtatagcatatggaaaactctgtaaagaaattatgtttacaagagtatattcaactgTtgctttttttttacaaagaaaatagtatatatcatgcaactaattttagtatataaacttttaagaatctaccagactgtaaatttgatcgatatcactgcaactagcttcagatatgagcaagctgatatcattaggcatgaagcagccaaacttgtaatttcattatacgagacaaaacctgtgaatatgtactgatgagttgaaagttcagtatttccccctccatttttcccctttccccatctgcatcaggttctaggaaccaaacatattacagtcaccagagagataggatgcaggttcaacacaagatctatgtctcaacatgttacacgaactcctggtcctggtcatctggtcttcgagaaccctcttcgccgtcgatcattctcctagtcatgttggccctctgaacaaggcggaccagcgcttgcaccacctcagacatcggcggtctgaactccggctcaggctgaaatagtgaaggttttggttggtataattcagattcttggtgttcagttatgaatatgctggcaaactgcattgtaccaggagtgaaggttatatacctggacacacagcgcaatgacgtctgcgaaacgggacagggatttggcagggtacaggcccttgagcgctgggtcgaccatccggtccaacgcatcgatgtcatgcagctggggagttgcccaccggacaagtgactgctctgtccggagtctagcgctgcgacgatagtttgacacaacagtcaGgggtcaggactaagaaattaggaatcatcaaatgtaggcataaacaattcagggatgcagaatcagagaaaaataggaatacctgtcaaatggtttgcggcctgtcaagagctccagcatgacaactccaaagctataaacatcactcttgagggtatactgcccagtcatgtcaacttcaggggcactatatccagaaccctgatctgaagcctattgagatttatttggaaacatgaaaaatatggtaagccatatgttgtgtaacatcttggatactcaagaaaagaaccaatccattcagaacttaagtttccttttttaagtaagaccataaaTttctttacaattgaaaatatatatgtttgttggagcaaaatgatttgagttttacctggaattcagaatcaggaacattgctggcaagtccagcatcagaaacatgaggattgaactcggtgtccagcaagatattagatgacttgaagttcttgtggataatagaaggagaacaaatttcatgaagatacctacagaaagttaacaggaaaggtgattaggtgttgacagaattccatgcaattaagagaatttacaagtgatctgtgcatatactcgttatttacctatcacattccattctattaTaatggcaagtcagatcaattttcacaagtcattaagttggaaaaaagacaataatttatttgaaaagtatccaacagatagggagagagatcttagttttcacttactctagtgcccgtgcagaacctaacgcaatcttaacacgagaattccagctgagtggtttgctatattcatctgggaggtgaagcatatcatgcagcgaaccatttctgtggaaatcataaactagcaagtgctgtccatgctccatgcaatagcccacaagctcattgagattgggatggtgcaactttgaaatgtttgacaccaagtcaaagaaatcgtctgaagattggcttggcaacacagtactgtttagtttcttgacagctagtacctgattcatataaggagaaatgtaagccacattgatcatgtgaagaaatgaactgtctttgtatatccaagtgtgaaacacttggtaacttccaaggcagaacaaatatatgatggtggaaatctgaattggtaagaaagcaatcaactcaatattttcatttacatattgtactataaatgaatgaagttttgtcactattgctaggaagaaatggaaaccatgtatgaatgtattgcttctgcctctaagattgcttaggtgcatttatgtaggaaaagtcactctaaaatcaaatttacagcacagttttaaaaactgcacagtaagatatcttttgctattctctcaagcaaatggcaagtgcaatcatgcgtacctttccatcactgaattgtgccctgtaaacacgtccaaaagtaccctctccaacaagattgtccatgttgaaactatctgttgccatctgtaggtctgcaactgaataaactgttgcttttactgatgctgaattacttttctttgcaacaggcttgtttgaaaagtcatcatcatcgtcatcaaatgactggttgcgctcaatcttaggaggtggttttagactaacggccacaggggaaggcaaaggctccacctctatcttggtggattctggtataggcttcacatctgcatttgtagaaccatgcatacattataacttacaaaactaaagtgtcgatcatggtatatcaaacactgcaacactcaaacactgacctttaacttcattggaagggtatgaattgaaaggctgtcgctgttcaacatgttcttgccttgtacctttgcgTtttctctttatcaagaagaatgctacaactgctccaatgaccagtagagctacgataattcctgctatagctccagcacgtaaccctgaatttccaccagaacttgatgagctaccactgccattggagtgtctgcctgggcTttttttacggttgcgtgatggtggaggtgctgtgaatggtggtggtggtggtgccggacctgtgctccaagaattgccatcggttctgttgaacataacattagttcaagatgcagccatccaaaacattagggaactaagacataagcaatacttactgaagactatttattttctttagctcattaggaatccaaccagtaaaacggttgtttcccacatttctgcaataaaggaggaaaaactggacttagtacaatattgtgtgatataaccgatttataccttcaaaatgatttgcttacaaattatccaggggaagattagcaaggacattgattgatccagtaaattggttgttctgcagatacctggtaagatagaacataggttataggtataagagaactTAtaaatttattatattattcaaagttccttcttacaaagttttcaggcttgacagagaagtgaaactttgtgggagatcaccagtaagagaattgaaggagagatcactgtagcaatgtacagaaatatagtaagagcaaagatacatcgtgacttgtaagaaatgcaaacagagaagttagaagaattttgtgtgcacattgagatcaacctagaatacttgttttaagtaagagtactcacagtgttgataaacttggaaggttggaaaagacatctgtcatatttccttgtaattggttatgattaaggtttctgtattcacaaAGaaaatccaattaacccatagagtacaatatgaatttcaaggcaaatttgtatttgggtcaaaaggtactcacagatacttaagtttaggcattgtggaaattgagtatggcacatttccagcaaactggttcccagcaagattgctgcaaataaaaaattcacttaaattatcgccataaataaccaagaacaattagatagtatgtgtcagtacaatttttttccctaaaatagattataaaatggcaacatctgaggaacttacagcctctcaagcttcttatttggaagattgtattgaatattttggccacccccaagattattttggctcatgtcactgcatggaattatgatcaagttaatcaccaagtgaactcccaaacagaaagaactactccAaaaattccattatccaaactcacagctcaactagggactccatggtgttcatattgtaggccagattccccgaaagccccaagctcggcaatttactagtagaaccaggaagagaaaaacacatcagagaaaacaataaattgggctcacaagcaagaacattgaattatgcaaccacactacccacattgctgtgactgatgatccagagcaggtgatgccctgccatgaggcgccacatgggtcaccgccattcacctgccaaccgcgcagctgccccggcgaattgaggctggtgaatagcgcattgaggacagtaactgcataataaaaagtaaagaattacttcaagtcaataggtgtggaatatcgccagacaaattttcagttaacatgaatacatgattacttataacggaaagctggaccagtcccacctagagattcacatgatatcaggaccaatgaaatggatcacagatgcaaatagctactaaactgaatctactttggatgagcaatgatgtcacggatccatcttgggcaattttgttggttctggtatactttacaaatgattgaatgctcctacaatggtcattaactcatttatctcccctgaaactAaaacttctcccctacaatcatcaaacagaatgaacaacacactccaggtgcatagatgcagagtttcccaaagatcccaatgcaaaccctagctcagaatccccatcaatgatcaaatcaaccagcaaaggtgtctggactgtgctgacagctgctgaaagatttggggcaagagaaagctgctcaaaatcctcattcctcccaaatctaccgaaaaaccacatcatgtgatccaacaaaacaagatttagcttaacaactcagagcaataaacatcagcaaaaGaaagagacgaacaagcattcacaaaatctccagctcagcagaaacaaacgccaccaaagatgtgggtacaggcattcaaagcaggaaccagcaaagacaccccccatggtcccaatgctgcaaagacaaaatcttgccttctcccgaccaaaaatccatggcggtccagaacaaaggaatcaagaacctcaaaagcaagaaaacAaaaaagaaaagcacaagcacaagcaagcaaacaatgagaccccaacccaaacagagattttcttcttctttttttccttttccccagcagctcaccatcattggcgtcagtggtcgcagcaaccaagattcgccgctgggtccaagaacagcagcacgagacgaggaagacgagcggccatgcccaggccgccattgctcctcctccacctcctctctctccttctctcctctccttataggaacaagagagagtggggaggaagatgaagaaaagctgctttcttggctaaaaaattccgccttttctttcggttggggctgatttctcacgccattttttctccccctgcgatttttgttgggttttttcactgttcactcctgcgtgctcatgaattcttttgct
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| CDS seq | atggcggcctgggcatggccgctcgtcttcctcgtctcgtgctgctgttcttggacccagcggcgaatcttggttgctgcgaccactgacgccaatgatgttactgtcctcaatgcgctattcaccagcctcaattcgccggggcagctgcgcggttggcaggtgaatggcggtgacccatgtggcgcctcatggcagggcatcacctgctctggatcatcagtcacagcaattaaattgccgagcttggggctttcggggaatctggcctacaatatgaacaccatggagtccctagttgagcttgacatgagccaaaataatcttgggggtggccaaaatattcaatacaatcttccaaataagaagcttgagaggctcaatcttgctgggaaccagtttgctggaaatgtgccatactcaatttccacaatgcctaaacttaagtatctaaaccttaatcataaccaattacaaggaaatatgacagatgtcttttccaaccttccaagtttatcaacacttgatctctccttcaattctcttactggtgatctcccacaaagtttcacttctctgtcaagcctgaaaactttgtatctgcagaacaaccaatttactggatcaatcaatgtccttgctaatcttcccctggataatttaaatgtgggaaacaaccgttttactggttggattcctaatgagctaaagaaaataaatagtcttcaaaccgatggcaattcttggagcacaggtccggcaccaccaccaccaccattcacagcacctccaccatcacgcaaccgtaaaaaaAgcccaggcagacactccaatggcagtggtagctcatcaagttctggtggaaattcagggttacgtgctggagctatagcaggaattatcgtagctctactggtcattggagcagttgtagcattcttcttgataaagagaaaAcgcaaaggtacaaggcaagaacatgttgaacagcgacagcctttcaattcatacccttccaatgaagttaaagatgtgaagcctataccagaatccaccaagatagaggtggagcctttgccttcccctgtggccgttagtctaaaaccacctcctaagattgagcgcaaccagtcatttgatgacgatgatgatgacttttcaaacaagcctgttgcaaagaaaagtaattcagcatcagtaaaagcaacagtttattcagttgcagacctacagatggcaacagatagtttcaacatggacaatcttgttggagagggtacttttggacgtgtttacagggcacaattcagtgatggaaaggtactagctgtcaagaaactaaacagtactgtgttgccaagccaatcttcagacgatttctttgacttggtgtcaaacatttcaaagttgcaccatcccaatctcaatgagcttgtgggctattgcatggagcatggacagcacttgctagtttatgatttccacagaaatggttcgctgcatgatatgcttcacctcccagatgaatatagcaaaccactcagctggaattctcgtgttaagattgcgttaggttctgcacgggcactagagtatcttcatgaaatttgttctccttctattatccacaagaacttcaagtcatctaatatcttgctggacaccgagttcaatcctcatgtttctgatgctggacttgccagcaatgttcctgattctgaattccaggcttcagatcagggttctggatatagtgcccctgaagttgacatgactgggcagtataccctcaagagtgatgtttatagctttggagttgtcatgctggagctcttgacaggccgcaaaccatttgacagcgctagactccggacagagcagtcacttgtccggtgggcaactccccagctgcatgacatcgatgcgttggaccggatggtcgacccagcgctcaagggcctgtaccctgccaaatccctgtcccgtttcgcagacgtcattgcgctgtgtgtccagcctgagccggagttcagaccgccgatgtctgaggtggtgcaagcgctggtccgccttgttcagagggccaacatgactaggagaatgatcgacggcgaagagggttctcgaagaccagatgaccaggaccaggagttcgtgtaa
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| Protein seq | MAAWAWPLVFLVSCCCSWTQRRILVAATTDANDVTVLNALFTSLNSPGQLRGWQVNGGDPCGASWQGITCSGSSVTAIKLPSLGLSGNLAYNMNTMESLVELDMSQNNLGGGQNIQYNLPNKKLERLNLAGNQFAGNVPYSISTMPKLKYLNLNHNQLQGNMTDVFSNLPSLSTLDLSFNSLTGDLPQSFTSLSSLKTLYLQNNQFTGSINVLANLPLDNLNVGNNRFTGWIPNELKKINSLQTDGNSWSTGPAPPPPPFTAPPPSRNRKKSPGRHSNGSGSSSSSGGNSGLRAGAIAGIIVALLVIGAVVAFFLIKRKRKGTRQEHVEQRQPFNSYPSNEVKDVKPIPESTKIEVEPLPSPVAVSLKPPPKIERNQSFDDDDDDFSNKPVAKKSNSASVKATVYSVADLQMATDSFNMDNLVGEGTFGRVYRAQFSDGKVLAVKKLNSTVLPSQSSDDFFDLVSNISKLHHPNLNELVGYCMEHGQHLLVYDFHRNGSLHDMLHLPDEYSKPLSWNSRVKIALGSARALEYLHEICSPSIIHKNFKSSNILLDTEFNPHVSDAGLASNVPDSEFQASDQGSGYSAPEVDMTGQYTLKSDVYSFGVVMLELLTGRKPFDSARLRTEQSLVRWATPQLHDIDALDRMVDPALKGLYPAKSLSRFADVIALCVQPEPEFRPPMSEVVQALVRLVQRANMTRRMIDGEEGSRRPDDQDQEFV |
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| Function | Protein STRUBBELIG-RECEPTOR FAMILY 7 [UniProtKB/Swiss-Prot:Q9LUL4] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsGoSa_10g0009490 | OsGoSa_10g0009490.01 | Chr10 | 14979578 | 14985084 | - | NAM | ||
| CDS seq | atggcggcctgggcatggccgctcgtcttcctcgtctcgtgctgctgttcttggacccagcggcgaatcttggttgctgcgaccactgacgccaatgatgttactgtcctcaatgcgctattcaccagcctcaattcgccggggcagctgcgcggttggcaggtgaatggcggtgacccatgtggcgcctcatggcagggcatcacctgctctggatcatcagtcacagcaattaaattgccgagcttggggctttcggggaatctggcctacaatatgaacaccatggagtccctagttgagcttgacatgagccaaaataatcttgggggtggccaaaatattcaatacaatcttccaaataagaagcttgagaggctcaatcttgctgggaaccagtttgctggaaatgtgccatactcaatttccacaatgcctaaacttaagtatctaaaccttaatcataaccaattacaaggaaatatgacagatgtcttttccaaccttccaagtttatcaacacttgatctctccttcaattctcttactggtgatctcccacaaagtttcacttctctgtcaagcctgaaaactttgtatctgcagaacaaccaatttactggatcaatcaatgtccttgctaatcttcccctggataatttaaatgtgggaaacaaccgttttactggttggattcctaatgagctaaagaaaataaatagtcttcaaaccgatggcaattcttggagcacaggtccggcaccaccaccaccaccattcacagcacctccaccatcacgcaaccgtaaaaaaAgcccaggcagacactccaatggcagtggtagctcatcaagttctggtggaaattcagggttacgtgctggagctatagcaggaattatcgtagctctactggtcattggagcagttgtagcattcttcttgataaagagaaaAcgcaaaggtacaaggcaagaacatgttgaacagcgacagcctttcaattcatacccttccaatgaagttaaagatgtgaagcctataccagaatccaccaagatagaggtggagcctttgccttcccctgtggccgttagtctaaaaccacctcctaagattgagcgcaaccagtcatttgatgacgatgatgatgacttttcaaacaagcctgttgcaaagaaaagtaattcagcatcagtaaaagcaacagtttattcagttgcagacctacagatggcaacagatagtttcaacatggacaatcttgttggagagggtacttttggacgtgtttacagggcacaattcagtgatggaaaggtactagctgtcaagaaactaaacagtactgtgttgccaagccaatcttcagacgatttctttgacttggtgtcaaacatttcaaagttgcaccatcccaatctcaatgagcttgtgggctattgcatggagcatggacagcacttgctagtttatgatttccacagaaatggttcgctgcatgatatgcttcacctcccagatgaatatagcaaaccactcagctggaattctcgtgttaagattgcgttaggttctgcacgggcactagagtatcttcatgaaatttgttctccttctattatccacaagaacttcaagtcatctaatatcttgctggacaccgagttcaatcctcatgtttctgatgctggacttgccagcaatgttcctgattctgaattccaggcttcagatcagggttctggatatagtgcccctgaagttgacatgactgggcagtataccctcaagagtgatgtttatagctttggagttgtcatgctggagctcttgacaggccgcaaaccatttgacagcgctagactccggacagagcagtcacttgtccggtgggcaactccccagctgcatgacatcgatgcgttggaccggatggtcgacccagcgctcaagggcctgtaccctgccaaatccctgtcccgtttcgcagacgtcattgcgctgtgtgtccagcctgagccggagttcagaccgccgatgtctgaggtggtgcaagcgctggtccgccttgttcagagggccaacatgactaggagaatgatcgacggcgaagagggttctcgaagaccagatgaccaggaccaggagttcgtgtaa
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| Protein seq | MAAWAWPLVFLVSCCCSWTQRRILVAATTDANDVTVLNALFTSLNSPGQLRGWQVNGGDPCGASWQGITCSGSSVTAIKLPSLGLSGNLAYNMNTMESLVELDMSQNNLGGGQNIQYNLPNKKLERLNLAGNQFAGNVPYSISTMPKLKYLNLNHNQLQGNMTDVFSNLPSLSTLDLSFNSLTGDLPQSFTSLSSLKTLYLQNNQFTGSINVLANLPLDNLNVGNNRFTGWIPNELKKINSLQTDGNSWSTGPAPPPPPFTAPPPSRNRKKSPGRHSNGSGSSSSSGGNSGLRAGAIAGIIVALLVIGAVVAFFLIKRKRKGTRQEHVEQRQPFNSYPSNEVKDVKPIPESTKIEVEPLPSPVAVSLKPPPKIERNQSFDDDDDDFSNKPVAKKSNSASVKATVYSVADLQMATDSFNMDNLVGEGTFGRVYRAQFSDGKVLAVKKLNSTVLPSQSSDDFFDLVSNISKLHHPNLNELVGYCMEHGQHLLVYDFHRNGSLHDMLHLPDEYSKPLSWNSRVKIALGSARALEYLHEICSPSIIHKNFKSSNILLDTEFNPHVSDAGLASNVPDSEFQASDQGSGYSAPEVDMTGQYTLKSDVYSFGVVMLELLTGRKPFDSARLRTEQSLVRWATPQLHDIDALDRMVDPALKGLYPAKSLSRFADVIALCVQPEPEFRPPMSEVVQALVRLVQRANMTRRMIDGEEGSRRPDDQDQEFV
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 1.018916 | 81.375320 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_10g0389800 | RBH | 0.150249 | 0.097156 | 5.017187 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os10g25090 | RBH | 0.136526 | 0.117539 | 1.213705 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os10g0389800 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_10g0009270 | RBH | 0.135817 | 75.238525 | 31.971910 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_10g0009350 | RBH | 0.184975 | 25.668015 | 4.430686 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_10g0009180 | RBH | 0.0 | 69.570221 | 28.104862 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_10g0009570 | RBH | 0.0 | 1.614848 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_10g0009330 | RBH | 2.021832 | 57.415268 | 44.876183 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_10G0224100 | RBH | 12.247035 | 19.267394 | 14.7681245 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_10g0009320 | RBH | 0.0 | 3.330439 | 1.929819 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_10G0242000 | RBH | 11.901901 | 2.729649 | 39.640047 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_10g0009110 | RBH | 0.178371 | 0.679773 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_10g0009080 | RBH | 0.196977 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_03g0006120 | RBH | 1.181407 | 57.552883 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_10g0009100 | RBH | 0.898330 | 0.0 | 2.487912 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_10g0009600 | RBH | 0.084830 | 36.590836 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_10G009420 | RBH | 0.0 | 17.199146 | 11.088292 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_10g0009390 | RBH | 0.171014 | 35.230808 | 22.967360 |
