Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsGoSa_09g0004720 | OGI:09022540 | 16/16 | GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | Chr09:8419257-8425493 | ||||||||
| Gene Symbol | PHL3, OsPHL3 | ||||||||||
| DNA seq | agattatactacaaccctccaatctataaacacagaagttgaagagagagaaagaagcaatagaggagagagaagagaagaGgtcaagaagagaagcaagaggagagaggagaatcgctgcctctgccactggaaagcagcagcagcaggcagcagcagaggagaagcaagaagcaagaaagagagagaaagcgttgggacttttcattggatcctccgcttttgggaggagcagcaaaggtctcgtctttcctctcttcttctcttccttgttgccggcgaggaggaagaagaaagaggaggagatgttcccgcctgggctgatccaccaccggccggacggcggcgaggcggggcgtgcggcggggggagggcccagcctggtgctgaccgccgatcccaagccccgcctccggtggacggccgacctccacgagcgcttcgtcgacgccgtcgcccagctcggcggccccgagagtgagatttcccccttgcttctctcccccccattctctccgatctccggtagcttagctcccccattggagaggcggcgcattggcgttgcgcttgcgcggttggttggtgggtgggtgggttgctccttcgttcttggtggtgatggtggtggttcgcgccaaagctcggattgggagcggagatttcggcgcgggatttggggggcattgttttgtttgttcggagattcaggaaatgctttggatcttttcgtttggttataataagtcttcgattttggcaaggagagaaatgcccgcttggccagcgcttagggaagcggatttagcccgctctaggctggttttggtgtgatttggaggggaaacttgtacccattaattgtttacaaattacaaatttggggggtttactgattggaggtgaaaaattgaggtcggctactgatttgagctgcttgcttgtcctgtactttaacgaattctgcaccggtagcaatcaagagtgttttgttaatacgaaactggtggtggtttcgggtgttagaattgggacaaggatgagggagaagtttctgctcattttgggtttatttcagtggtttgtaagtgaacgcagtgggataaatacagcgatttcgcaatttcccacatgatgaggtgcagtatctcacattggcacaggcatagagcagatcagtatttggagaaaatggctcattcggtttaaaggattttcataggattattgtaggaattgaatccttaggaatttttcctatatgcatcattcgtttcataggaatggatcctaccaaattcctaaggattgtagtctttcaagctaattctgtaggattcttagcatgaggtgagacctcttaactttacctattcctttgatttggaattcctatgaaccgaataagccctaaggtagcggcttgattgttgccaccaacacggttcacctgctatgcttagtacttcagaaagacatctgcctagcttgcataggtgtgcaactcccgcctcacctgtatagccaatcgttccacctagagccacctgattggtgattaggcgttaggcgcttgccaccgtatataatcaacctagagtatgcattgaatgttttatcatataatcatgtttttggtggcaaaggatattcagaagcagaagttataaaggattgattactctagcatctgatgtatgaatcttggttcaacacgtaaccatggagctgtttgcactagtgaacagtaatccctgcacacatcatttttttaacctgactatattacatagttgactgatagggtttgtgcataagtgttttcgttcatgtttgaattttgtgagatgggtgctatgcattgtctgtgctagtctatgcctaaaactttgtaataactaatcactaatggttgatgcatgacttatgcagagaccggaataaaggcattcatttatcttaaaaacaacatagttgttcagagatgatactgtttgatttttcttgggtgcagtctaggcaTttttggtgtatttcttagaatctggtgcttacatgccaaaatgcttaacttatggtatagagctataatagttctatactgatttagtttagcttgatgctttgattttagtggactgtggtgtctgcaagaagtctttgattcaatcattaaaatttattaagggcatacagtgaatagaagtggctgtatttttctcctttgaggtcttactcaattttgttgacatgagtttagttcaatttactactgtcaattttcttgggacttgtttcaaatttcacagaactatgcaaatttacatatttaagccacaatatcaccAaactatagatttaacaccaaatttatcacaaattttggcctgtagttttctgtaatttactctattttctttatAaaaattcaaggattcacttttacctttaggttctaattattttgatgaaccatttaaatctcagaccaacattacaagtgcttctgtgattactacctccgtccataaaaggccttagttttagctatgcacctggacaactgtctatacaaagaaaagcgtgtattgtactgttccttattttcttgtaggaggtataatcagtagcacagcgaaactcacactagatcaaaattctaaatcttaattgaatcatgtaggtagtctaaaaaaggttgtgcctgtggctttgtgcaccttctagtgcagtccctgggacaattattccattatctaaaaaaagtaaatgttggcactctaaattgctggtgcagtgcccgggataattattccattatctaaaaaaagtaaatgttggcactctAaattgctggtttatcattagtcaattgctaagggaatcaagatggatttttttacattttagacctttctaaaaacttattttacaaatagacccctaaaaaacttattccaggaatagatccttttcgcgacaccaatgtcattggcgccgtggtccaacataatgatgccaaagatattaccgccgtccccctttacattagtgagttagcttctgtgggGATgctagggggacggtgccaatgtcattggcgccatcatgttggactacaacgtcaatgatgttggcaccgcgaaaagggtctattcctagagtaagttttttttggggtctatttgtaaaataagtttcccaaaaggtctaaaatgtgaaaaatccaggggaatccagtaaaacagtttaagatttgatttcattatatatttttaaattgagtactcaatgcatgattatcttgcagaagcaacacctaaaactatcttgaggacaatgggtgtgaaggggctcactcttttccacttgaagagtcatcttcaggtaattcataatacttttgcatgtcttgcaaagtttgaaatacagctatttaagtttgatcttcctcgaccagaaatatagactggggaaacaatctggaaaagaggcatcggagcaatctaaagatggtaagttacacaaagcaatctactgacctcactgttaatttcgattaatattccaacttccaagtcttgctgcaacaattccaatttgttcacattgtggaagttcattctgaagtcatgcaactatcctaccattgatctgtggacatgttaaatacggctctgctcatgaactggtgtcttatgaagttggttgatcatcgattgcaatttgatcaatattgatgtattgcaaggaatcactatgtagctaacttcttgaaaagattggagattgcttgaagttatatgatttggagatggtagcttgggtttactggtgttaagtttggatgcatcttgggaggaatcaattggtagcaacttcttaaaagaccagggatcgctggaaatcgtatggattggagatggcagctatgttaacagtgttatgaatttcctttaagcttaccataaatctctgttctggggcaccagtctgtagggacatgaaggaatagagtggacctgatgtgggaaataatgggaggattcgtagttgagtggtctgcaggcaaccaaggactgaatggtgagagggaatctgtatgtggaggagtattttacgtcagtggacaagcttttctttttcagggactagctatatttttgacgtcacatttttcaccataaaatagtcaattgttttttacattgtaaattacatatatttacactgtattacacaaatttacactgtagttttcaaaacttacattgtaaattccaatatttacaccataatttttatataggatttacagtgtagtagaagaaaaccagaaatcgactgataggtaaacacccatgtacctgcaaaactagcactaacaggtgcgctgtgtacaaataccaaagactccatgcataaaaaactgactgaaatctatcaatatttgtgtcgccacaaacatagcgattccatatgggtatatgcaaattcgtagtggcacacatgctgatccagaagctataggtcctgtccagtagggagaatttgtgggttgtacttttgccttgtgtagaaaaagttcagtcttgagttaaatttagccccagtaataattgcatattgctaagtaggagtactaacatgaataatcacatcaaggttcatcagtgggaaatggaagagaaattatacacaaaatgttggcaatattaagcgtagtgttggtacatgtatcgttgaattgcagtttattgtaattgtttcaaatggaaacgtttgtagattgaatttgctcatctagtcaaattctggactttgttatgcagatatgtctttttgacttgaaaaccacactttttaagagttcttttgaccttctactaacctctgacctctgctatggtttgcagcatcctatcttctagatgcccaaggtggaatgagtgtgtcgcctagagtttctactcaagatgttaaagagtaagctccatgggatactcatcctggacatttgtttctccattctggcaaatacgaatattttaataatagtgctcgtgttgtgctagtttaaaaagagttaaaatgtcacatttacttgttacagaaatcaagaggtcaaggaagcattgcgagctcagatggaaatgcaacgaagactgcatgaacaagtggaggtaactttgaaagcttgatccgtcataatattctttggtttttatacatgccattagcaagaaagaagagctagtgctcaccaacttcagtatttgctacataagaataaagccctcaagctttaaaacaaatgatataccgtgaggctgatacttcaccaatattcagaacagccggtccttcaggatttgtgcgctgcatctcgtgttaccgaaaaatgtggaacacacttgttcattatcatttctacaactgcacttttaacacttagcatgccacacaatatgtcaacatgaaaagctctattgaagatctgttagttttaagattttcattgtaatcaggaatacattgtccaacacacaatagttgactatttcattttcccatgatcaggtccagaagcatgtgcagatcagaatggaagcctaccagaagtacatcgacactttactagagaaggcatgcaagatcgtctccgagcagcttgcctcaagcggcttcagcatctcggacaatgatctcccggagctctctggtggtgtcatgtgcggctccgctgacacattgagctcctccatcttccaccagctctctgtcagcccaatcaacctgcatagtcctgagggcaagccgacgccctcgggcatcgaaggccaaatgatcctccagaagtcacctgagcttaagcgcaagtcttgctgagccgtgtcgttcgacgcaatctggatgtgcaaacaccagttttcttgtcatGggggtagtcatgtcgaatttcggaattcgaatttcggtaagaaagggggatgctctgccaatcttgtagaggccatcttgttctctggctaatgcatgccaacattgtcaagtagcaaggttttctctcttatgttatcaatccaatcagcatatcttatataaaatgcctaatgtgctagatcaagtgccttccttgataaataatattattaccgtgagatttgggttctgacatgattaactgatatatccatctgaaacaatttcgaatatcagttcctagctttctatgca
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| CDS seq | atgttcccgcctgggctgatccaccaccggccggacggcggcgaggcggggcgtgcggcggggggagggcccagcctggtgctgaccgccgatcccaagccccgcctccggtggacggccgacctccacgagcgcttcgtcgacgccgtcgcccagctcggcggccccgagaaagcaacacctaaaactatcttgaggacaatgggtgtgaaggggctcactcttttccacttgaagagtcatcttcagaaatatagactggggaaacaatctggaaaagaggcatcggagcaatctaaagatgcatcctatcttctagatgcccaaggtggaatgagtgtgtcgcctagagtttctactcaagatgttaaagaaaatcaagaggtcaaggaagcattgcgagctcagatggaaatgcaacgaagactgcatgaacaagtggaggtccagaagcatgtgcagatcagaatggaagcctaccagaagtacatcgacactttactagagaaggcatgcaagatcgtctccgagcagcttgcctcaagcggcttcagcatctcggacaatgatctcccggagctctctggtggtgtcatgtgcggctccgctgacacattgagctcctccatcttccaccagctctctgtcagcccaatcaacctgcatagtcctgagggcaagccgacgccctcgggcatcgaaggccaaatgatcctccagaagtcacctgagcttaagcgcaagtcttgctga
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| Protein seq | MFPPGLIHHRPDGGEAGRAAGGGPSLVLTADPKPRLRWTADLHERFVDAVAQLGGPEKATPKTILRTMGVKGLTLFHLKSHLQKYRLGKQSGKEASEQSKDASYLLDAQGGMSVSPRVSTQDVKENQEVKEALRAQMEMQRRLHEQVEVQKHVQIRMEAYQKYIDTLLEKACKIVSEQLASSGFSISDNDLPELSGGVMCGSADTLSSSIFHQLSVSPINLHSPEGKPTPSGIEGQMILQKSPELKRKSC |
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| Function | Protein PHR1-LIKE 2 [UniProtKB/Swiss-Prot:Q94A57] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsGoSa_09g0004720 | OsGoSa_09g0004720.01 | Chr09 | 8419257 | 8425493 | + | NAM | ||
| CDS seq | atgttcccgcctgggctgatccaccaccggccggacggcggcgaggcggggcgtgcggcggggggagggcccagcctggtgctgaccgccgatcccaagccccgcctccggtggacggccgacctccacgagcgcttcgtcgacgccgtcgcccagctcggcggccccgagaaagcaacacctaaaactatcttgaggacaatgggtgtgaaggggctcactcttttccacttgaagagtcatcttcagaaatatagactggggaaacaatctggaaaagaggcatcggagcaatctaaagatgcatcctatcttctagatgcccaaggtggaatgagtgtgtcgcctagagtttctactcaagatgttaaagaaaatcaagaggtcaaggaagcattgcgagctcagatggaaatgcaacgaagactgcatgaacaagtggaggtccagaagcatgtgcagatcagaatggaagcctaccagaagtacatcgacactttactagagaaggcatgcaagatcgtctccgagcagcttgcctcaagcggcttcagcatctcggacaatgatctcccggagctctctggtggtgtcatgtgcggctccgctgacacattgagctcctccatcttccaccagctctctgtcagcccaatcaacctgcatagtcctgagggcaagccgacgccctcgggcatcgaaggccaaatgatcctccagaagtcacctgagcttaagcgcaagtcttgctga
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| Protein seq | MFPPGLIHHRPDGGEAGRAAGGGPSLVLTADPKPRLRWTADLHERFVDAVAQLGGPEKATPKTILRTMGVKGLTLFHLKSHLQKYRLGKQSGKEASEQSKDASYLLDAQGGMSVSPRVSTQDVKENQEVKEALRAQMEMQRRLHEQVEVQKHVQIRMEAYQKYIDTLLEKACKIVSEQLASSGFSISDNDLPELSGGVMCGSADTLSSSIFHQLSVSPINLHSPEGKPTPSGIEGQMILQKSPELKRKSC
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 5.653372 | 39.483173 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_09g0299000 | RBH | 1.242067 | 0.538539 | 8.529970 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os09g12750 | RBH | 0.807833 | 0.616454 | 2.472586 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os09g0299000 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_09g0004700 | RBH | 1.136734 | 40.667839 | 12.638600 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_09g0004730 | RBH | 0.582282 | 9.554375 | 3.257088 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_09g0004820 | RBH | 3.407650 | 26.928936 | 13.664739 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_09g0004600 | RBH | 0.659901 | 1.082037 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_09g0004650 | RBH | 9.657129 | 25.938263 | 26.978819 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_09G0128800 | RBH | 16.557871 | 17.109821 | 41.928934 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_09g0004790 | RBH | 0.555398 | 1.531807 | 1.489454 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_09G0122500 | RBH | 19.8563925 | 10.16752 | 46.9805605 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_09g0004780 | RBH | 0.154558 | 0.199608 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_09g0004650 | RBH | 1.231714 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_08g0012180 | RBH | 6.575727 | 10.151031 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_09g0004520 | RBH | 1.451207 | 0.0 | 3.173287 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_09g0004560 | RBH | 0.431222 | 22.153957 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_09G004860 | RBH | 0.266557 | 9.164525 | 4.515379 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_09g0004710 | RBH | 1.963515 | 25.019083 | 11.943320 |
