Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsGoSa_09g0002160 | OGI:09010620 | 16/16 | GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | Chr09:4028842-4029537 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | tcaaaccagaggatgtgtgtgttcttcaacaaactgaattacttcccacctagctcctttcctcttcactgtcatccttactttgcaggcagcctgtcttgttttacttcttttccttttctttggagggcacgcttcacccgttttttcttttggaccacatttgttgcaaacaaacattactttgtcacgttctccatctttggctgacttccttgaagtgttgattttgattgaaaatccaacgcactttgcatacctgttatagtgagcccttgcttcctcctctgagttgaaagtcaaggtgaggtatggcacttgtgtgctgcacaaaaaatcctgtgatggcgatgactgtgcttctgaatcatctgtgccagagtcttcacttgaaattgtgttggcagtagcagttgttgcgccagttgcaacactagtatgcattgtgtctgcatgatctgacatttcttcaaatacttgcatctcatcattggcttcaaatacttgcatctgatcattggttgcaaatacctgcatctcatcattggcttcaaatacttgcatctgatcattggttgcaaatacttgcatctcatcattggctacattgtgtgctcgtaaacttccagcatcatcagcagtatacatagtttcaaagtcaaaagtgtcatccaaatttatagtaggaatctccat
More
|
||||||||||
| CDS seq | atggagattcctactataaatttggatgacacttttgactttgaaactatgtatactgctgatgatgctggaagtttacgagcacacaatgtagccaatgatgagatgcaagtatttgcaaccaatgatcagatgcaagtatttgaagccaatgatgagatgcaggtatttgcaaccaatgatcagatgcaagtatttgaagccaatgatgagatgcaagtatttgaagaaatgtcagatcatgcagacacaatgcatactagtgttgcaactggcgcaacaactgctactgccaacacaatttcaagtgaagactctggcacagatgattcagaagcacagtcatcgccatcacaggattttttgtgcagcacacaagtgccatacctcaccttgactttcaactcagaggaggaagcaagggctcactataacaggtatgcaaagtgcgttggattttcaatcaaaatcaacacttcaaggaagtcagccaaagatggagaacgtgacaaagtaatgtttgtttgcaacaaatgtggtccaaaagaaaaaacgggtgaagcgtgccctccaaagaaaaggaaaagaagtaaaacaagacaggctgcctgcaaagtaaggatgacagtgaagaggaaaggagctaggtgggaagtaattcagtttgttgaagaacacacacatcctctggtttga
More
|
||||||||||
| Protein seq | MEIPTINLDDTFDFETMYTADDAGSLRAHNVANDEMQVFATNDQMQVFEANDEMQVFATNDQMQVFEANDEMQVFEEMSDHADTMHTSVATGATTATANTISSEDSGTDDSEAQSSPSQDFLCSTQVPYLTLTFNSEEEARAHYNRYAKCVGFSIKINTSRKSAKDGERDKVMFVCNKCGPKEKTGEACPPKKRKRSKTRQAACKVRMTVKRKGARWEVIQFVEEHTHPLV |
||||||||||
| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsGoSa_09g0002160 | OsGoSa_09g0002160.01 | Chr09 | 4028842 | 4029537 | - | NAM | ||
| CDS seq | atggagattcctactataaatttggatgacacttttgactttgaaactatgtatactgctgatgatgctggaagtttacgagcacacaatgtagccaatgatgagatgcaagtatttgcaaccaatgatcagatgcaagtatttgaagccaatgatgagatgcaggtatttgcaaccaatgatcagatgcaagtatttgaagccaatgatgagatgcaagtatttgaagaaatgtcagatcatgcagacacaatgcatactagtgttgcaactggcgcaacaactgctactgccaacacaatttcaagtgaagactctggcacagatgattcagaagcacagtcatcgccatcacaggattttttgtgcagcacacaagtgccatacctcaccttgactttcaactcagaggaggaagcaagggctcactataacaggtatgcaaagtgcgttggattttcaatcaaaatcaacacttcaaggaagtcagccaaagatggagaacgtgacaaagtaatgtttgtttgcaacaaatgtggtccaaaagaaaaaacgggtgaagcgtgccctccaaagaaaaggaaaagaagtaaaacaagacaggctgcctgcaaagtaaggatgacagtgaagaggaaaggagctaggtgggaagtaattcagtttgttgaagaacacacacatcctctggtttga
More
|
|||||||
| Protein seq | MEIPTINLDDTFDFETMYTADDAGSLRAHNVANDEMQVFATNDQMQVFEANDEMQVFATNDQMQVFEANDEMQVFEEMSDHADTMHTSVATGATTATANTISSEDSGTDDSEAQSSPSQDFLCSTQVPYLTLTFNSEEEARAHYNRYAKCVGFSIKINTSRKSAKDGERDKVMFVCNKCGPKEKTGEACPPKKRKRSKTRQAACKVRMTVKRKGARWEVIQFVEEHTHPLV
More
|
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os09g07200 | SBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_09g0000230 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_09g0001990 | RBH | 1.252590 | 3.502950 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_09g0000220 | RBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_09g0000270 | SBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_09g0002100 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_09G0057800 | RBH | 0.020208 | 0.068261 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_09g0002050 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_09G0062800 | RBH | 0.66514 | 0 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_09g0002040 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_09g0002060 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_09g0002020 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_09g0002080 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_09G002120 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_09g0002120 | RBH | 0.0 | 8.801612 | 0.0 |
