Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsGoSa_08g0024100 | OGI:08078840 | 16/16 | GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | Chr08:28878127-28881927 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ctccgtgcccgtcgaccaccgtggtgctcgccggcgacggacggagcgagaatgcagggcggatctagcggcatcgtctacggcggcctcaagtaccaggcaagccttctcgaaccttctagaacagtctcccgtaggggggcgcccctcacccttgcaccccactcttgcaggcgcggtgtatcgccgacgtgcgcgcggccgccgggtcgaccaccttcctcgctggaaccctcagtctcaaggaggagaacgaggtgcgtctcctggaggagggggggagggctctccgccccaactcgtcttcttccatcgactctggctctgccctgtgtgttgcagcaattcgagcaattgtagaagagaacgttgtgattggatctctaactcgttgttgctgccaagtaggtgcacctgatccggttttcaccggcggagagcgagctggtgtgcgacgggctgttctaccatccaagcgagatctgggaccttaagtcttgccccttcgatcatagggtcttctccacagtctacacgtctggtaaagaaagaattcccctctttgttactctctttctgccggtgcattgggcatttcatctagttgtaaatttctaaaaatttctttatgttatgatatggatggaaggcgagggctatggtgcatctgtttggaagatcccggagctgcacgggcagtcgaattcgccgccacttgagcagcttttcacgcttgatgagcacacgggcaaaataagatggtgcgcgctcttgtttctgttgatgttctgtgctcgcttgttctggtgccgtttagtcttattgctgtagagtattttgccgcttgttgattttatacatactggtaagtagtaaccagagtctagttgaagaatgcaactgtatgctgatgatttgcaaagcccaaaaagggtctcttaTtttggggattagtcgactcacaaaaacgatgactgtgattttaccaatgctactttatgaagcacattgtcatgagaaggtTAtacaccatatagggttcagcggatatttcaagttttcctagcataccttacttgtttacaacacatacaattcgaaggccaaagcaacataagaattaattttggctcgtccgaggttctctatagggagcacacaatagatgaaattttaatatttttatttaccaataccattttttgatctaaagttttagataagttatgacctttcttcacagtcttataacaatgtataagctcctttaatacattgttatttctggtggataccatgctcagactgtatctgtaagctggcttatctttgcagtgttctctggtggccactagggaagcacgacaagttaattagtattgatgacagaaatattttcctctggaatatagatgcatcaaataagtcagccaaggtgtgcccagcatccttctgttttaccaatagtacatcgacataattacgtgatattacattgtttctaagcattatcttcgcacttcagtgtcaactttatggaaacttacagttctgtatctctgttagcagaagttctgaacttaatcttgtcctaacttgaattcctaagttacaggtgatgcaaaaggggtctgctgacatgcttcccaatttacgtggtggatcttgggatccacacgatcacaattcaattgctgcaattactgattcctcacttcactgctgggatctccgttctatgaagttaataccttcacaatcttgacatattagatttgttgatctagtgtctgtggtttagatgctgaaatgttccacttatatctttatctgtgaacttgttcttttcaggaaatcaaatgcaattgagcatgcgcattttcgggatgtggattataaccccaagaaacagcacttaattgtgagtggtgatacttgccgtacttcatttcaagtgtttcagatcaagccatagttcgtttgcttaagtcatggttatgaattagtactgaAGagaaaaacactgttgtattacttccgttttctttgttacctgtcaacttcgtttcgtctttgttttgattaaggatcctgcagagattAtttttcttacattagtaggtactgtgtggtatcagctgtgcCGCTgcttgctagccgttacTttttttattgttcaatgaaactaaacactcggatttgattgtgttatctagctgaatcattgaaccctatttcagaggttgttgaatcagacaattgtgcaattaacggttatagtgataggtactgtttatttttattcagtttaatttatttatggttccaataaaagatcctttatgcattgtagacaatagcagaagatgaatttggtatccgtttgtgggatctcagaatgcttaagtatcctctgaagaatctccctgggcattcgcattggtatatttctatatcctgttttactcagattagaatcctttcaattcaatgtttagttagtcgacccttgtgaattttgcaggACatgggctgttcggcacaatcctgagcatgaccagttgattctggtctctccctctctctctatttcttcaagtggtttgcatattgtgatgtactgttttattgtgtactgactacattgtaactcctgtagagtgctggaacagattcaactgtcaatttgtggtttgctaaagttggcactgatgactcaggacctgaaaggtttctattccttgtgtattttcttgtttggttactttgtttgttataatcttgatgcccacattcttgcttatcagtcctcctggttcaCCcacaagagaagaagaaccattactaaattcatacactgattatgaagatagcatatacggtaccctcaggaattcctacctgtgtttataattctacgttataattttgacaaggaatcacacagcgtattaaaaaattgtaggtattgcatggagctcccatgatccgtcattatttgcttctttatcttatgacggaagggtaagtacctgcagcatttgtatgcttatttgaaatatttgtcttgtgattttttaaagccagtttatctgatatctgaatcttgactctaatgatctgtgataatttcctctaatggtcaggttgttttagaatcagtcaagccctacttgcagagaaaatgaagctgcatgttctctccgttgtaagggcacataactccacttctttgctcagtatgttgttgatgcgattaccaatagtaccttctcttgttctaacagaccttcccttttctgctcaagcagacttgtttgttgtgcATattattggtgttgtagattttctccttgccatcctatatactgtactCtggtacatggagttgatgcgatggcctgattcgacagcttgtgaccccagaacaatagcaagccaataatgtttcagtaaccatcttggcagaaatccagtgtctcatatgatctgccactcttgtgattcaggccagctgtaattgcaaaattcagcctggtacaattgccaaatactgctcctcgagtgattcttgaatgtcatatatctgagaaaggttggtgtcaattgttgcgttatgtggtgaagtacaaccgatctgaattttgtagaactgttgagattgacaagatctgagcttctgtttttcattcgatttttcactgtatgagtggttcccttactttagcaaagattaatatttcgtctgtatgttacaaaatcattcagggaatgagcaaattaacttcaaattgttttggg
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| CDS seq | atgcagggcggatctagcggcatcgtctacggcggcctcaagtaccaggcgcggtgtatcgccgacgtgcgcgcggccgccgggtcgaccaccttcctcgctggaaccctcagtctcaaggaggagaacgaggtgcacctgatccggttttcaccggcggagagcgagctggtgtgcgacgggctgttctaccatccaagcgagatctgggaccttaagtcttgccccttcgatcatagggtcttctccacagtctacacgtctggcgagggctatggtgcatctgtttggaagatcccggagctgcacgggcagtcgaattcgccgccacttgagcagcttttcacgcttgatgagcacacgggcaaaataagatgtgttctctggtggccactagggaagcacgacaagttaattagtattgatgacagaaatattttcctctggaatatagatgcatcaaataagtcagccaaggtgatgcaaaaggggtctgctgacatgcttcccaatttacgtggtggatcttgggatccacacgatcacaattcaattgctgcaattactgattcctcacttcactgctgggatctccgttctatgaagaaatcaaatgcaattgagcatgcgcattttcgggatgtggattataaccccaagaaacagcacttaattacaatagcagaagatgaatttggtatccgtttgtgggatctcagaatgcttaagtatcctctgaagaatctccctgggcattcgcattggACatgggctgttcggcacaatcctgagcatgaccagttgattctgagtgctggaacagattcaactgtcaatttgtggtttgctaaagttggcactgatgactcaggacctgaaagtcctcctggttcaCCcacaagagaagaagaaccattactaaattcatacactgattatgaagatagcatatacggtattgcatggagctcccatgatccgtcattatttgcttctttatcttatgacggaagggttgttttagaatcagtcaagccctacttgcagagaaaatga
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| Protein seq | MQGGSSGIVYGGLKYQARCIADVRAAAGSTTFLAGTLSLKEENEVHLIRFSPAESELVCDGLFYHPSEIWDLKSCPFDHRVFSTVYTSGEGYGASVWKIPELHGQSNSPPLEQLFTLDEHTGKIRCVLWWPLGKHDKLISIDDRNIFLWNIDASNKSAKVMQKGSADMLPNLRGGSWDPHDHNSIAAITDSSLHCWDLRSMKKSNAIEHAHFRDVDYNPKKQHLITIAEDEFGIRLWDLRMLKYPLKNLPGHSHWTWAVRHNPEHDQLILSAGTDSTVNLWFAKVGTDDSGPESPPGSPTREEEPLLNSYTDYEDSIYGIAWSSHDPSLFASLSYDGRVVLESVKPYLQRK |
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| Function | WD repeat-containing protein DWA2 [UniProtKB/Swiss-Prot:Q6NPN9] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsGoSa_08g0024100 | OsGoSa_08g0024100.01 | Chr08 | 28878127 | 28881927 | + | NAM | ||
| CDS seq | atgcagggcggatctagcggcatcgtctacggcggcctcaagtaccaggcgcggtgtatcgccgacgtgcgcgcggccgccgggtcgaccaccttcctcgctggaaccctcagtctcaaggaggagaacgaggtgcacctgatccggttttcaccggcggagagcgagctggtgtgcgacgggctgttctaccatccaagcgagatctgggaccttaagtcttgccccttcgatcatagggtcttctccacagtctacacgtctggcgagggctatggtgcatctgtttggaagatcccggagctgcacgggcagtcgaattcgccgccacttgagcagcttttcacgcttgatgagcacacgggcaaaataagatgtgttctctggtggccactagggaagcacgacaagttaattagtattgatgacagaaatattttcctctggaatatagatgcatcaaataagtcagccaaggtgatgcaaaaggggtctgctgacatgcttcccaatttacgtggtggatcttgggatccacacgatcacaattcaattgctgcaattactgattcctcacttcactgctgggatctccgttctatgaagaaatcaaatgcaattgagcatgcgcattttcgggatgtggattataaccccaagaaacagcacttaattacaatagcagaagatgaatttggtatccgtttgtgggatctcagaatgcttaagtatcctctgaagaatctccctgggcattcgcattggACatgggctgttcggcacaatcctgagcatgaccagttgattctgagtgctggaacagattcaactgtcaatttgtggtttgctaaagttggcactgatgactcaggacctgaaagtcctcctggttcaCCcacaagagaagaagaaccattactaaattcatacactgattatgaagatagcatatacggtattgcatggagctcccatgatccgtcattatttgcttctttatcttatgacggaagggttgttttagaatcagtcaagccctacttgcagagaaaatga
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| Protein seq | MQGGSSGIVYGGLKYQARCIADVRAAAGSTTFLAGTLSLKEENEVHLIRFSPAESELVCDGLFYHPSEIWDLKSCPFDHRVFSTVYTSGEGYGASVWKIPELHGQSNSPPLEQLFTLDEHTGKIRCVLWWPLGKHDKLISIDDRNIFLWNIDASNKSAKVMQKGSADMLPNLRGGSWDPHDHNSIAAITDSSLHCWDLRSMKKSNAIEHAHFRDVDYNPKKQHLITIAEDEFGIRLWDLRMLKYPLKNLPGHSHWTWAVRHNPEHDQLILSAGTDSTVNLWFAKVGTDDSGPESPPGSPTREEEPLLNSYTDYEDSIYGIAWSSHDPSLFASLSYDGRVVLESVKPYLQRK
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsGoSa_08g0024100 | OsGoSa_08g0024100.02 | Chr08 | 28878127 | 28881927 | + | NAM | ||
| CDS seq | atgcagggcggatctagcggcatcgtctacggcggcctcaagtaccaggcgcggtgtatcgccgacgtgcgcgcggccgccgggtcgaccaccttcctcgctggaaccctcagtctcaaggaggagaacgaggtgcacctgatccggttttcaccggcggagagcgagctggtgtgcgacgggctgttctaccatccaagcgagatctgggaccttaagtcttgccccttcgatcatagggtcttctccacagtctacacgtctggcgagggctatggtgcatctgtttggaagatcccggagctgcacgggcagtcgaattcgccgccacttgagcagcttttcacgcttgatgagcacacgggcaaaataagatgtgttctctggtggccactagggaagcacgacaagttaattagtattgatgacagaaatattttcctctggaatatagatgcatcaaataagtcagccaaggtgatgcaaaaggggtctgctgacatgcttcccaatttacgtggtggatcttgggatccacacgatcacaattcaattgctgcaattactgattcctcacttcactgctgggatctccgttctatgaagaaatcaaatgcaattgagcatgcgcattttcgggatgtggattataaccccaagaaacagcacttaattacaatagcagaagatgaatttggtatccgtttgtgggatctcagaatgcttaagtatcctctgaagaatctccctgggcattcgcattggACatgggctgttcggcacaatcctgagcatgaccagttgattctgagtgctggaacagattcaactgtcaatttgtggtttgctaaagttggcactgatgactcaggacctgaaagtcctcctggttcaCCcacaagagaagaagaaccattactaaattcatacactgattatgaagatagcatatacggtattgcatggagctcccatgatccgtcattatttgcttctttatcttatgacggaagggttgttttagaatcagtcaagccctacttgcagagaaaatga
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| Protein seq | MQGGSSGIVYGGLKYQARCIADVRAAAGSTTFLAGTLSLKEENEVHLIRFSPAESELVCDGLFYHPSEIWDLKSCPFDHRVFSTVYTSGEGYGASVWKIPELHGQSNSPPLEQLFTLDEHTGKIRCVLWWPLGKHDKLISIDDRNIFLWNIDASNKSAKVMQKGSADMLPNLRGGSWDPHDHNSIAAITDSSLHCWDLRSMKKSNAIEHAHFRDVDYNPKKQHLITIAEDEFGIRLWDLRMLKYPLKNLPGHSHWTWAVRHNPEHDQLILSAGTDSTVNLWFAKVGTDDSGPESPPGSPTREEEPLLNSYTDYEDSIYGIAWSSHDPSLFASLSYDGRVVLESVKPYLQRK
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
| RI | Chr08 | 28881273 | 28881927 | + | OsGoSa_08g0024100.01 | OsGoSa_08g0024100.01,OsGoSa_08g0024100.02 | All |
Expression
| Leaf | Root | Panicle | |
| FPKM | 3.088285 | 18.143133 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_08g0554000 | RBH | 1.016336 | 1.373594 | 6.570563 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os08g44010 | RBH | 0.817568 | 0.695653 | 1.081896 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os08g0554000 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_08g0024970 | RBH | 0.168043 | 2.300827 | 3.887087 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_08g0024760 | RBH | 0.084794 | 1.311928 | 2.524695 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_08g0024750 | RBH | 1.105727 | 13.519398 | 10.005026 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_08g0024980 | RBH | 0.099491 | 0.545802 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_08g0024730 | RBH | 3.651134 | 23.870533 | 15.244014 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_08G0441700 | RBH | 10.0071525 | 15.2649845 | 14.183176 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_08g0024530 | RBH | 0.298497 | 1.249127 | 0.917740 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_08G0460700 | RBH | 10.935106 | 12.314549 | 31.392931 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_08g0023930 | RBH | 0.047694 | 0.285481 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_08g0024280 | RBH | 0.640059 | 16.892935 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_09g0018010 | RBH | 0.0 | 0.000000 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_08g0024990 | RBH | 0.324147 | 1.758860 | 0.809945 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_08g0024260 | RBH | 0.513499 | 10.201066 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_08G024440 | RBH | 0.193065 | 9.240385 | 3.626034 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_08g0024600 | RBH | 0.000000 | 8.977103 | 5.567430 |
