Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsGoSa_08g0023990 | OGI:08078790 | 10/16 | GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | Chr08:28816696-28818459 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | gtttcatccattaaaaacacgtgaaaagcacgaggaagtaactctgaacagtgaacttaactgtatccggaactttatcctggatgtaagttgtaacagccctgaccgccctatgggcttccctgacaacactcttgcccatgggataacaccttctagaattttcagaacacctaacaccgtttttttcttttttagataagggtattttttttacccggcatctacatccaaccggatatatacggccattgaaatagggaacttagccccggaaacaacccaatctgaaatttgctccatagaggatttgaactcagaaccttggggtactactcaggtcactgtaaccactaggCTAcatgggtgtccaatgtaaggcactcgagtgacaccgcgttcttgaggatataacatgttagctcaatcaagttcttcgcggagctgaaccctgtcatcttcacactcttgaggtagcaatggcggtgttccggcatctgcctcaaaggcgaggaatctccaagaaccgattcatgcttcatatgctcttgtgatacctgataatgataaaagataagtcaaataaagtatacatatccaagagatcagtgatcagatagaggagtatatctttgcaggatggaatgagcgaagagtgccttacattcaagatcaatgtctccaaggaaggagacgcgtcAAggaaagaaacaagagaaaaataatcatacgacgtgttaaaggaggctgctgagctaacggaaatggtgaggtgcttaaggtagaggaattttgtaggcagcattggtgtattgaccacctgcacaatgtatgtcatgtctcaaattaatttgaattaataatcctataatatacaactactcttaatatgcataataaaacgcctaatgttttagagatcgatacctcatcattggagtaaatggcaagagtctcaagatttggcataacggatggcagctcggcacgagcataacagacaacctttggatggatcatgcttaatctcttcacttgcaatgggtctccaagtgagagttttacatttccgctgaagcttaaactggaaagatttggagcattgctctctatcactcgcagcctacagcatccagcaaccaccaggcagctcaatttttgcagcacgcaaggtatcttcaggcaaattatctcctcacagttgctgaggttcaactgctccaaagcaatagtagaattggaaagaaagcactccaactcatcctcggtaacatgtacaaaatgcagactcagacttgttagttgttaggtttctcaaggtgccaagttcagctgtggggcgaaaggcacaatagccaagtttaagataccgaattgagcttcgaatcccactggataaaactgagcatgggaaattgtactctgctgtaatactagtacatagcataacaatgagctcttcagtcatcggtgtaacagcaagtttaagccaacggtgaggcagagaagggaaatgccctctaattgaagattcaatatcttcacaccagagcctgagcggtttcttagaatgccatcaattatgtcgctggcattcactatatgtgaatgtagtgaatgtacttccgggagaaacacttccctagtcaaggtgagattgggacgacatctccaggaatgaagaaaggcacgagataggcaagcagcacgagcagcatcacgcagtggcattagggaatgtacatggcaccagatgtcctgcat
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| CDS seq | atgcaggacatctggtgccatgtacattccctaatgccactgcgtgatgctgctcgtgctgcttgcctatctcgtgcctttcttcattcctggagatgtcgtcccaatctcaccttgactagggaagtgtttctcccggaagtacattcactacattcacatatagtgaatgccagcgacataattgatggcattctaagaaaccgctcaggctctggtgtgaagatattgaatcttcaattagagggcatttcccttctctgcctcaccgttggcttaaacttgctcagagtacaatttcccatgctcagttttatccagtgggattcgaagctcaattcgttgaacctcagcaactgtgaggagataatttgcctgaagataccttgcgtgctgcaaaaattgagctgcctggtggttgctggatgctgtaggctgcgagtgatagagagcaatgctccaaatctttccagtttaagcttcagcggaaatgtaaaactctcacttggagacccattgcaagtgaagagattaagcatgatccatccaaaggttgtctgttatgctcgtgccgagctgccatccgttatgccaaatcttgagactcttgccatttactccaatgatgaggtggtcaatacaccaatgctgcctacaaaattcctctaccttaagcacctcaccatttccgttagctcagcagcctcctttaacacgtcgtatgattatttttctcttgtttctttccTTgacgcgtctccttccttggagacattgatcttgaatgtatcacaagagcatatgaagcatgaatcggttcttggagattcctcgcctttgaggcagatgccggaacaccgccattgctacctcaagagtgtgaagatgacagggtgttatcccatgggcaagagtgttgtcagggaagcccatagggcggtcagggctgttacaacttacatccaggataaagttccggatacagttaagttcactgttcagagttacttcctcgtgcttttcacgtgtttttaa
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| Protein seq | MQDIWCHVHSLMPLRDAARAACLSRAFLHSWRCRPNLTLTREVFLPEVHSLHSHIVNASDIIDGILRNRSGSGVKILNLQLEGISLLCLTVGLNLLRVQFPMLSFIQWDSKLNSLNLSNCEEIICLKIPCVLQKLSCLVVAGCCRLRVIESNAPNLSSLSFSGNVKLSLGDPLQVKRLSMIHPKVVCYARAELPSVMPNLETLAIYSNDEVVNTPMLPTKFLYLKHLTISVSSAASFNTSYDYFSLVSFLDASPSLETLILNVSQEHMKHESVLGDSSPLRQMPEHRHCYLKSVKMTGCYPMGKSVVREAHRAVRAVTTYIQDKVPDTVKFTVQSYFLVLFTCF |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsGoSa_08g0023990 | OsGoSa_08g0023990.01 | Chr08 | 28816696 | 28818459 | - | NAM | ||
| CDS seq | atgcaggacatctggtgccatgtacattccctaatgccactgcgtgatgctgctcgtgctgcttgcctatctcgtgcctttcttcattcctggagatgtcgtcccaatctcaccttgactagggaagtgtttctcccggaagtacattcactacattcacatatagtgaatgccagcgacataattgatggcattctaagaaaccgctcaggctctggtgtgaagatattgaatcttcaattagagggcatttcccttctctgcctcaccgttggcttaaacttgctcagagtacaatttcccatgctcagttttatccagtgggattcgaagctcaattcgttgaacctcagcaactgtgaggagataatttgcctgaagataccttgcgtgctgcaaaaattgagctgcctggtggttgctggatgctgtaggctgcgagtgatagagagcaatgctccaaatctttccagtttaagcttcagcggaaatgtaaaactctcacttggagacccattgcaagtgaagagattaagcatgatccatccaaaggttgtctgttatgctcgtgccgagctgccatccgttatgccaaatcttgagactcttgccatttactccaatgatgaggtggtcaatacaccaatgctgcctacaaaattcctctaccttaagcacctcaccatttccgttagctcagcagcctcctttaacacgtcgtatgattatttttctcttgtttctttccTTgacgcgtctccttccttggagacattgatcttgaatgtatcacaagagcatatgaagcatgaatcggttcttggagattcctcgcctttgaggcagatgccggaacaccgccattgctacctcaagagtgtgaagatgacagggtgttatcccatgggcaagagtgttgtcagggaagcccatagggcggtcagggctgttacaacttacatccaggataaagttccggatacagttaagttcactgttcagagttacttcctcgtgcttttcacgtgtttttaa
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| Protein seq | MQDIWCHVHSLMPLRDAARAACLSRAFLHSWRCRPNLTLTREVFLPEVHSLHSHIVNASDIIDGILRNRSGSGVKILNLQLEGISLLCLTVGLNLLRVQFPMLSFIQWDSKLNSLNLSNCEEIICLKIPCVLQKLSCLVVAGCCRLRVIESNAPNLSSLSFSGNVKLSLGDPLQVKRLSMIHPKVVCYARAELPSVMPNLETLAIYSNDEVVNTPMLPTKFLYLKHLTISVSSAASFNTSYDYFSLVSFLDASPSLETLILNVSQEHMKHESVLGDSSPLRQMPEHRHCYLKSVKMTGCYPMGKSVVREAHRAVRAVTTYIQDKVPDTVKFTVQSYFLVLFTCF
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os08g43840 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_08g0024900 | SBH | 0.000000 | 0.000000 | 0.000000 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_08g0024680 | SBH | 0.000000 | 0.000000 | 0.744019 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_08g0024680 | SBH | 0.647590 | 2.193879 | 0.000000 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_08g0024900 | SBH | 0.167979 | 0.259811 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_08g0024610 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | NA | NA | NA | NA | NA |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_08g0024440 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_08G0459700 | RBH | 0.0221665 | 0.009258 | 0.1112995 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_08g0023810 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_08g0024170 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_09g0015500 | RBH | 0.0 | 0.000000 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_08g0024870 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_08g0024130 | RBH | 0.038483 | 1.271019 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_08G024340 | SBH | 0.000000 | 0.000000 | 0.000000 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_08g0024470 | RBH | 0.0 | 0.0 | 0.0 |
