Basic Info

Gene ID OGI # | Score   Accession | Assembly | Annotation Location Links
OsGoSa_08g0016180 OGI:01024340 | 16/16 GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) Chr08:21794218-21800050
Gene Symbol -
DNA seq

ctaaaaaaaatttacctgagcaaagtcaatcactagtttctttgttcctgtaccgagaacagaattgtctggatagaagaaaagacggttgacatattgaatcctaatgttttgaatgtctttttgagagaaatggtttgtcagctgaactcttggaccccatagttccatgtattttagagtaaaaactccgcaatcaaaactaggaaaaagaaaaaggacataagtaaccacagttacttatcataaaaaataaaacaaacaaaaaaaattaaaaaaagctaatgcagttatggtcatactatttactctgtaaatttactaatgaaatctattgcaattctagtccatgttgtactaagaaacaggctcttatcccatctagtaattctgaatgaaacaattgacaaataggaactaaattttttgaatgataatcataacaaacaaactaaaattgtgcattaacagcaaaacaaacaggttatgcaacaattagaaaaacagaatagtcaagaatttctgaatgaccaacagaacatacaagAttcctgtcaacaagagaacaattgggcatctgtacaactctaaccaacaaaaacaaacaaatAaaaaatattattggactaaaagttacagtAaagaaaaacaacttacagattattttggcgaggtactggtggatatacaattttgaaagcatcaaaattgatttgatattcttccatgatggaattccaagcaagtgcaaaattggatgtctacaaaacatAaaaagaaaactctgtaattataaattccaaatcacaaattgaacagtaatacatatatttaaaaatttgaaaataaactgaccaatctattcttaacttcatcttgatattcagaaccttcttcatgtaatgagtcaagaaagacaaacatttcatctttcagatgaacaatgaaaacaaaccagtggcgcttgtagagaattggaaagaagagctgaaacaattaaataaaacaaattataaatgtaaaaggaaatatgaaattaaatatgacaagtaatttacaaattcacaaaccatttggattttgaggggtgagataaatgaaacaaatatcggcagaacacagagacaacaaaattagaaacttcatgtccaaaattaaatgatcctccaaaagaactgaatttgcagtgaacaccatcaatttcaactgcatgtcgtctacattcagaatacaaataaattcaaattacaaatcatacattgaaaatgaagattattagAAaaaaaagtacaaaatagtacttactcttgatatctgcttgttgatagagtgcagacagcattataaatttgtctttcatattgtgagactgtgaagtttgatctttgaggagtataaggatctgtgcaatactttgcgggattgattacccttctaagatcgtgatgaattggttttgttccagaagtacttggattgaaattcttcatgttgcataacaaaactctttctggactagcaaaggttttgaagttttgtttctgagaatccaacataattctattcattttattgtacatcatgttggttttgtttccaatatcagcacatttcttagagaatttcttttcaccaataaaaacaacatcaggtgaatcctgaaatttaacaaataaattaaatagtacagttagaaacatattaaaaaaagaagatcaaaataactagaaataaaaaataataattattagcttataaccagaacagaaaaatgataaataaaagtaaggtatagggcatggaatatttgaaatatcaatatgaaataacagttaagcaaataaactagtgatgttcaacagcaaacttacaaacttgagattataaactgaataaaaagaaatgaataagcagtgagaagaaaaaccttttggaataaaaaaagaaagaatgtatgttattactagaactgaaatacattgtaacctacaagaattacagcaaaactatggagaacaataatgcaaaaatggaattagaaaaatttttaaacaccatttaatttcaaaaagggaacatcaatgaaaataaactatgagattattcatacctttatgatgtgacaacctttttcattttctttgttttcattgagagaagcattaggagaagttgaattttcaagtgtcaccatgtacatcttatcctaaaattttaaaatttaacaaatgaaagtttagtttgtatatacagaagAaataaagaaagaaattaatgtcagaattaccggactgtctgaacagattattaggctttcaacagcagcagcaaaagtttgagacaactttcttggagtgatctgcaagatttgtataaatcaatataatgttctaaaaaagtattccttatgaaatttgaagttacttcacaagtaccttatttcttaaaacaggatttggggagtatgaatcaggaataacttgatatgaatctacaagatgagcagttgtaatttcttttttgaaatcatcattttcatgatggaggtcatcatcagaaccccagattttAaaagacggttgatcatgAaaaacttgattgtttcgagctacagcaataacataagaattagaaacaaaaaatatggcaacaaaaagtaagaggaccatagtacagtgcactaaaatcacatgacaaaagaaatgaaatattacaataactcaatttttttgatgctagaacaattaaagatatacaagtaaaaacaaatgagattccattAaaaaaaatttaccagtcaaggcagaatttttctctgtttcatctggtggattaataggaacatgaccttcaatgttaaataggcacaaacatcaataattcatatttaattttttaaaaaacagattaacaaatttagaaaaaaaaataacctGttttgttcaactttgtcattatttcatcaatgttgatatgtttaatctgcacagataaaaaATGacagttaaaaactatcaacaattacagttctatatattcagattataatgattgaaataaaaatgaaagaaaaacctcttctgaagaattcaaaatggtagacttattcacaggattaaattcttcatttggaattggcaacttatcatcatctagtactgttttactgtttccctacAaaaaaaaataaaaggacaaaaaaatgcttaatgattcacatgactattagaataaaaaaaattgaaatgagaacagaaaacaatgtacctttggagatgaggtgaaattgttatttttttgcacagcttgattaacatcatcattattttcttcaactggttcatgatctggttcaattccttaatttaaaatttataaaaaaaatcaagacatatgaatggaaaaaaattaaaaataaaataaacaacaaaattcgtaaattaaaagtaataacctgaattttcatgtgtagtaggttgagtaggataattggaactgcaatcagctaacaacaacagaacatctataagaagtttcttagccttgtcttcaaagatttcatcttcttttccaaaatgattacagagcaaatgacaaattttgtcttgaacatcacttggcaacagatcaccaacagaacttttgagcatatcagcaaatgaagatgagctattattcacctaaaaaattaaaacagaattttcaattctaatctaagaaaatttattagaacttgaaaagataaaaaatttgaaaaaaaaactaaacatttaccatttggtaacaagttgaagcaatatcattgactggtctttttccatacactccttcagatattttatcaaatttggaatagtccttaatcatagatcttttccaaactttaattcttggtgtatcaagtaatactttttgtgaaccaaagttgagaaaatccaggtaattaacctatgaaacattgaatatagaaattaaatgaatagtcatttagtacaaaataaaattagcataaatggagggaaaatttaccgctaaatggaataaacaaccaccaaaagttttcgatttctcaatcttgctaatgtgttccatcaaccagtcaaaacctaacttgcaccagtccaaactttcaattaagtccatgtcttcaaaggcacttaggtattttgtacctggaatcaaagaagagtttggacaaaggaagcaattcaaggaaacaatcataaagcagatgagaatttgatcatcaggaagttcttcatttttaattaacttttctccaatgaacttgacagaaggaatagaagttttcccaaaaatctgaagaatcttttgtttgccagaatcaaattttgaatggattgtactaccaccaacagggaggcctagcacaacatggacagattgcttgttcaatggaataagtttttggcccaaaactatatcagaacagttcacatctacttgttttgcaatccagagagcaaaagaattgggaacaaaacacttgtcaaatagcagcatgctttgaaaacaagaattttcaatgactgttttgtgatgtggacttaaagaatcaagaacttttgagaaatatttgactgagaatctagagaatgcatcagacttcaaatcagtgtcaacatttttctcctgacaaaaagaaaataaaacaatttaatcaataaataaaaaccaaacatagatataaaagggcattgcaaaaaactaaccttaaaattttgatcacctatgttgtgatgaatattaagcttttttttcaaactgttgataatttgatccctttgtatgatatcacgtagaacctgatttatcattacatcattgtccaattcaatagattcagaccatttcatctaaaaaaaattcaaaattaaaaacaagaatgatggaaaaatataaaatgaaaaataacaaacaaaataattaccttaatgttatcatcttcacttcTtttagacttactgagtttccttttcaaagttttcagaagttcatttgtagaaatttcatttacatgtggttgtgaaacatccatatcctaaaaaaacatattaaacaattaaaacattgcaaatgtgctatgaaacatggctacaacagagctacaactgcatactaatgaaaaaaataatgaaagaataatggatactattctgaccttggaacaacatgacaatttaagaacaaataaaacaagaaaatattggtcctactattacattggctaccaagcaatgagaatgtataattgcaaactcttcatgaatttacaaatggaaatgaaaagaacaactatattacaaatcaatgaaattgaaatgtaaaataaacttacatgactggctgagttatcatcagaatcacaattgtaatcatcatctttagcaggcaaagactcagaattaatatcatcagattcacttatgggctggctacaattatccaattttgaacgcttttggtgaaccatctattaaaaatagcaataaaaaatcaataaagtttggcagactataaattataaaataagtgaaggtatgcattaaaaaaaagATatatataattcctcagaaattgaccactttattcaggaaaaaaatgaacattacttaaacatggcaaacgaacaaaattaactcccagtacaatatatacgttggttagtactttcaacttgtaagtcaaatgttatagtttatctccatgtcctcacaaatatatgcaaagaggtccacactatgataaaaagtcaaacaatctcacaaacttaagccctgtacacctgattcacactagggaacatgaccat

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CDS seq

atggtcatgttccctagtgtgaatcagatggttcaccaaaagcgttcaaaattggataattgtagccagcccataagtgaatctgatgatattaattctgagtctttgcctgctaaagatgatgattacaattgtgattctgatgataactcagccagtcatgatatggatgtttcacaaccacatgtaaatgaaatttctacaaatgaacttctgaaaactttgaaaaggaaactcagtaagtctaaaAgaagtgaagatgataacattaagatgaaatggtctgaatctattgaattggacaatgatgtaatgataaatcaggttctacgtgatatcatacaaagggatcaaattatcaacagtttgaaaaaaaagcttaatattcatcacaacataggtgatcaaaattttaaggagaaaaatgttgacactgatttgaagtctgatgcattctctagattctcagtcaaatatttctcaaaagttcttgattctttaagtccacatcacaaaacagtcattgaaaattcttgttttcaaagcatgctgctatttgacaagtgttttgttcccaattcttttgctctctggattgcaaaacaagtagatgtgaactgttctgatatagttttgggccaaaaacttattccattgaacaagcaatctgtccatgttgtgctaggcctccctgttggtggtagtacaatccattcaaaatttgattctggcaaacaaaagattcttcagatttttgggaaaacttctattccttctgtcaagttcattggagaaaagttaattaaaaatgaagaacttcctgatgatcaaattctcatctgctttatgattgtttccttgaattgcttcctttgtccaaactcttctttgattccaggtacaaaatacctaagtgcctttgaagacatggacttaattgaaagtttggactggtgcaagttaggttttgactggttgatggaacacattagcaagattgagaaatcgaaaacttttggtggttgtttattccatttagcggttaattacctggattttctcaactttggttcacaaaaagtattacttgatacaccaagaattaaagtttggaaaagatctatgattaaggactattccaaatttgataaaatatctgaaggagtgtatggaaaaagaccagtcaatgatattgcttcaacttgttaccaaatggtgaataatagctcatcttcatttgctgatatgctcaaaagttctgttggtgatctgttgccaagtgatgttcaagacaaaatttgtcatttgctctgtaatcattttggaaaagaagatgaaatctttgaagacaaggctaagaaacttcttatagatgttctgttgttgttagctgattgcagttccaattatcctactcaacctactacacatgaaaattcaggaattgaaccagatcatgaaccagttgaagaaaataatgatgatgttaatcaagctgtgcaaaaaaataacaatttcacctcatctccaaagggaaacagtaaaacagtactagatgatgataagttgccaattccaaatgaagaatttaatcctgtgaataagtctaccattttgaattcttcagaagagattaaacatatcaacattgatgaaataatgacaaagttgaacaaaaCaggtcatgttcctattaatccaccagatgaaacagagaaaaattctgccttgactgctcgaaacaatcaagttttTcatgatcaaccgtctttTaaaatctggggttctgatgatgacctccatcatgaaaatgatgatttcaaaaaagaaattacaactgctcatcttgtagattcatatcaagttattcctgattcatactccccaaatcctgttttaagaaataagatcactccaagaaagttgtctcaaacttttgctgctgctgttgaaagcctaataatctgttcagacagtccggataagatgtacatggtgacacttgaaaattcaacttctcctaatgcttctctcaatgaaaacaaagaaaatgaaaaaggttgtcacatcataaaggattcacctgatgttgtttttattggtgaaaagaaattctctaagaaatgtgctgatattggaaacaaaaccaacatgatgtacaataaaatgaatagaattatgttggattctcagaaacaaaacttcaaaacctttgctagtccagaaagagttttgttatgcaacatgaagaatttcaatccaagtacttctggaacaaaaccaattcatcacgatcttagaaggctcttctttccaattctctacaagcgccactggtttgttttcattgttcatctgaaagatgaaatgtttgtctttcttgactcattacatgaagaaggttctgaatatcaagatgaagttaagaatagattgacatccaattttgcacttgcttggaattccatcatggaagaatatcaaatcaattttgatgctttcaaaattgtatatccaccagtacctcgccaaaataatctttttgattgcggagtttttactctaaaatacatggaactatggggtccaagagttcagctgacaaaccatttctctcaaaaagacattcaaaacattaggattcaatatgtcaaccgtcttttcttctatccagacaattctgttctcggtacaggaacaaagaaactagtgattgactttgctcaggtaaattttttttag

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Protein seq

MVMFPSVNQMVHQKRSKLDNCSQPISESDDINSESLPAKDDDYNCDSDDNSASHDMDVSQPHVNEISTNELLKTLKRKLSKSKRSEDDNIKMKWSESIELDNDVMINQVLRDIIQRDQIINSLKKKLNIHHNIGDQNFKEKNVDTDLKSDAFSRFSVKYFSKVLDSLSPHHKTVIENSCFQSMLLFDKCFVPNSFALWIAKQVDVNCSDIVLGQKLIPLNKQSVHVVLGLPVGGSTIHSKFDSGKQKILQIFGKTSIPSVKFIGEKLIKNEELPDDQILICFMIVSLNCFLCPNSSLIPGTKYLSAFEDMDLIESLDWCKLGFDWLMEHISKIEKSKTFGGCLFHLAVNYLDFLNFGSQKVLLDTPRIKVWKRSMIKDYSKFDKISEGVYGKRPVNDIASTCYQMVNNSSSSFADMLKSSVGDLLPSDVQDKICHLLCNHFGKEDEIFEDKAKKLLIDVLLLLADCSSNYPTQPTTHENSGIEPDHEPVEENNDDVNQAVQKNNNFTSSPKGNSKTVLDDDKLPIPNEEFNPVNKSTILNSSEEIKHINIDEIMTKLNKTGHVPINPPDETEKNSALTARNNQVFHDQPSFKIWGSDDDLHHENDDFKKEITTAHLVDSYQVIPDSYSPNPVLRNKITPRKLSQTFAAAVESLIICSDSPDKMYMVTLENSTSPNASLNENKENEKGCHIIKDSPDVVFIGEKKFSKKCADIGNKTNMMYNKMNRIMLDSQKQNFKTFASPERVLLCNMKNFNPSTSGTKPIHHDLRRLFFPILYKRHWFVFIVHLKDEMFVFLDSLHEEGSEYQDEVKNRLTSNFALAWNSIMEEYQINFDAFKIVYPPVPRQNNLFDCGVFTLKYMELWGPRVQLTNHFSQKDIQNIRIQYVNRLFFYPDNSVLGTGTKKLVIDFAQVNFF

Function -

Transcripts

Gene Transcript Chromosome Start End Strand Source
OsGoSa_08g0016180 OsGoSa_08g0016180.01 Chr08 21794218 21800050 - NAM
CDS seq

atggtcatgttccctagtgtgaatcagatggttcaccaaaagcgttcaaaattggataattgtagccagcccataagtgaatctgatgatattaattctgagtctttgcctgctaaagatgatgattacaattgtgattctgatgataactcagccagtcatgatatggatgtttcacaaccacatgtaaatgaaatttctacaaatgaacttctgaaaactttgaaaaggaaactcagtaagtctaaaAgaagtgaagatgataacattaagatgaaatggtctgaatctattgaattggacaatgatgtaatgataaatcaggttctacgtgatatcatacaaagggatcaaattatcaacagtttgaaaaaaaagcttaatattcatcacaacataggtgatcaaaattttaaggagaaaaatgttgacactgatttgaagtctgatgcattctctagattctcagtcaaatatttctcaaaagttcttgattctttaagtccacatcacaaaacagtcattgaaaattcttgttttcaaagcatgctgctatttgacaagtgttttgttcccaattcttttgctctctggattgcaaaacaagtagatgtgaactgttctgatatagttttgggccaaaaacttattccattgaacaagcaatctgtccatgttgtgctaggcctccctgttggtggtagtacaatccattcaaaatttgattctggcaaacaaaagattcttcagatttttgggaaaacttctattccttctgtcaagttcattggagaaaagttaattaaaaatgaagaacttcctgatgatcaaattctcatctgctttatgattgtttccttgaattgcttcctttgtccaaactcttctttgattccaggtacaaaatacctaagtgcctttgaagacatggacttaattgaaagtttggactggtgcaagttaggttttgactggttgatggaacacattagcaagattgagaaatcgaaaacttttggtggttgtttattccatttagcggttaattacctggattttctcaactttggttcacaaaaagtattacttgatacaccaagaattaaagtttggaaaagatctatgattaaggactattccaaatttgataaaatatctgaaggagtgtatggaaaaagaccagtcaatgatattgcttcaacttgttaccaaatggtgaataatagctcatcttcatttgctgatatgctcaaaagttctgttggtgatctgttgccaagtgatgttcaagacaaaatttgtcatttgctctgtaatcattttggaaaagaagatgaaatctttgaagacaaggctaagaaacttcttatagatgttctgttgttgttagctgattgcagttccaattatcctactcaacctactacacatgaaaattcaggaattgaaccagatcatgaaccagttgaagaaaataatgatgatgttaatcaagctgtgcaaaaaaataacaatttcacctcatctccaaagggaaacagtaaaacagtactagatgatgataagttgccaattccaaatgaagaatttaatcctgtgaataagtctaccattttgaattcttcagaagagattaaacatatcaacattgatgaaataatgacaaagttgaacaaaaCaggtcatgttcctattaatccaccagatgaaacagagaaaaattctgccttgactgctcgaaacaatcaagttttTcatgatcaaccgtctttTaaaatctggggttctgatgatgacctccatcatgaaaatgatgatttcaaaaaagaaattacaactgctcatcttgtagattcatatcaagttattcctgattcatactccccaaatcctgttttaagaaataagatcactccaagaaagttgtctcaaacttttgctgctgctgttgaaagcctaataatctgttcagacagtccggataagatgtacatggtgacacttgaaaattcaacttctcctaatgcttctctcaatgaaaacaaagaaaatgaaaaaggttgtcacatcataaaggattcacctgatgttgtttttattggtgaaaagaaattctctaagaaatgtgctgatattggaaacaaaaccaacatgatgtacaataaaatgaatagaattatgttggattctcagaaacaaaacttcaaaacctttgctagtccagaaagagttttgttatgcaacatgaagaatttcaatccaagtacttctggaacaaaaccaattcatcacgatcttagaaggctcttctttccaattctctacaagcgccactggtttgttttcattgttcatctgaaagatgaaatgtttgtctttcttgactcattacatgaagaaggttctgaatatcaagatgaagttaagaatagattgacatccaattttgcacttgcttggaattccatcatggaagaatatcaaatcaattttgatgctttcaaaattgtatatccaccagtacctcgccaaaataatctttttgattgcggagtttttactctaaaatacatggaactatggggtccaagagttcagctgacaaaccatttctctcaaaaagacattcaaaacattaggattcaatatgtcaaccgtcttttcttctatccagacaattctgttctcggtacaggaacaaagaaactagtgattgactttgctcaggtaaattttttttag

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Protein seq

MVMFPSVNQMVHQKRSKLDNCSQPISESDDINSESLPAKDDDYNCDSDDNSASHDMDVSQPHVNEISTNELLKTLKRKLSKSKRSEDDNIKMKWSESIELDNDVMINQVLRDIIQRDQIINSLKKKLNIHHNIGDQNFKEKNVDTDLKSDAFSRFSVKYFSKVLDSLSPHHKTVIENSCFQSMLLFDKCFVPNSFALWIAKQVDVNCSDIVLGQKLIPLNKQSVHVVLGLPVGGSTIHSKFDSGKQKILQIFGKTSIPSVKFIGEKLIKNEELPDDQILICFMIVSLNCFLCPNSSLIPGTKYLSAFEDMDLIESLDWCKLGFDWLMEHISKIEKSKTFGGCLFHLAVNYLDFLNFGSQKVLLDTPRIKVWKRSMIKDYSKFDKISEGVYGKRPVNDIASTCYQMVNNSSSSFADMLKSSVGDLLPSDVQDKICHLLCNHFGKEDEIFEDKAKKLLIDVLLLLADCSSNYPTQPTTHENSGIEPDHEPVEENNDDVNQAVQKNNNFTSSPKGNSKTVLDDDKLPIPNEEFNPVNKSTILNSSEEIKHINIDEIMTKLNKTGHVPINPPDETEKNSALTARNNQVFHDQPSFKIWGSDDDLHHENDDFKKEITTAHLVDSYQVIPDSYSPNPVLRNKITPRKLSQTFAAAVESLIICSDSPDKMYMVTLENSTSPNASLNENKENEKGCHIIKDSPDVVFIGEKKFSKKCADIGNKTNMMYNKMNRIMLDSQKQNFKTFASPERVLLCNMKNFNPSTSGTKPIHHDLRRLFFPILYKRHWFVFIVHLKDEMFVFLDSLHEEGSEYQDEVKNRLTSNFALAWNSIMEEYQINFDAFKIVYPPVPRQNNLFDCGVFTLKYMELWGPRVQLTNHFSQKDIQNIRIQYVNRLFFYPDNSVLGTGTKKLVIDFAQVNFF

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Event Type Chromosome Start End Strand Alternative mRNAs Total mRNAs Source

Expression

Leaf Root Panicle
FPKM 0.0 0.0 None

Homologues

Genome & Annotation Homologs Type Expression(FPKM)
Leaf Root Panicle
Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) OsNip_08g0514300 RBH 0.0 0.0 0.0
Nipponbare | IRGSP 1.0 | MSU LOC_Os08g33280 RBH 0.0 0.000000 0.0
Nipponbare | IRGSP 1.0 | RAP-db Os08g0514300 RBH None None None
Azucena | AzucenaRS1 | Gramene(+IsoSeq) OsAzu_08g0016850 RBH 0.0 0.0 0.0
KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) OsKeNa_08g0016720 RBH 0.0 0.0 0.0
CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) OsCMeo_08g0016680 RBH 0.0 0.0 0.0
ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) OsARC_08g0017010 RBH 0.0 0.0 None
PR 106 | Os127742RS1 | Gramene(+IsoSeq) OsPr106_08g0010550 SBH 0.0 0.0 0.0
Minghui 63 | MH63RS3 | HZAU OsMH63_08G0442900 SBH 0 0 0
IR 64 | OsIR64RS1 | Gramene(+IsoSeq) OsIR64_08g0010580 SBH 0.0 0.0 0.0
Zhenshan 97 | ZS97RS3 | HZAU OsZS97_08G0427500 RBH 0.035946 0.569521 0.0035085
LIMA | Os127564RS1 | Gramene(+IsoSeq) OsLima_04g0017960 SBH 0.0 0.0 None
KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) OsKYG_08g0010300 SBH 0.0 0.000000 None
GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) OsGoSa_04g0017900 RBH 0.0 0.0 None
LIU XU | Os125827RS1 | Gramene(+IsoSeq) OsLiXu_04g0018310 SBH 0.0 0.0 0.0
LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) OsLaMu_04g0018470 SBH 0.0 0.0 None
N22 | OsN22RS2 | Gramene(+IsoSeq) OsN22_08G016540 RBH 0.0 0.0 0.0
NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) OsNaBo_08g0016660 RBH 0.0 0.0 0.0
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National Key Laboratory of Crop Genetic Improvement

Huazhong Agricultural University

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