Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsGoSa_08g0013590 | OGI:08052100 | 15/16 | GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | Chr08:18719340-18721856 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | cttcttcttcttcttcccagccgccatggctcctcctcctccttcctcctccgttgctcttcgacgattcaacccagccgccatggagagcggagggaggtagctgactagctggggctggggatttccggcgaacggaggtgaggttggtgccgctccggccgctacttccgcgacccaaagaatcggcaagtccatagataccggacctccgcgaatgccccgcggccatagacgccgccgccgctgcgcatgcgccaccaccacctcgccgtcgccgccgcgaggtcccacgcctccctcctcaagtccggcttcgccgcccccacgccctggaaccagctcctcaccgcctactcccgctcctcccccgatggcctcgccgccgcgcgccgggtgttcgacgaggtgccccgccgcgacgaggtctcctggaacgcgctcctcgccgcacacgccgcgtccggcgcgcacccggaagcatggcgcctcctccgggccatgcacgcgcaggggctcgcttccaacacgttcgccctcggctcggccctccgctccgccgccgtagcgcggcgtcctgccatcggcgcccaactgcagtcgctcgctttgaaatccggccttgccaacaatgtgttcgcggcaagtgcattacttgatgtgtatgctaaatgtggccgcgtgagggatgcccgacaggtgtttgatggaatgccagagcggaacactgtttcttggaatgcactcattgccgggtatactgaatctggggacatggcatctgcactggagctgtttcttgagatggaaagagaaggtttggctccagatgaagcaacatttgcgtcgctgctcacagcagttgagggcccaagctgtttcttgatgcaccagttgcatgggaagattgtgaagtatggatctgcgttagggctgacagtgttgaatgcagcaatcactgcatattcacaatgtgggtccctgaaagactctagaaggatctttgatggaattggggacattagggatttgatctcatggaatgcgatgcttggagcttacactcacaatggaatggacgacgaggcgatgaaattctttgttaggatgatgcaagagagtggagttcatcctgacatgtatagtttcacaagtatcataagttcatgttcagagcatgggcatgatgatcatcaagggagagtaattcatgggttggtgatcaagagtgctctggaaggagtcacgcctgtttgtaatgctctgattgccatgtacactaggtacaatgagaattgcatgatggaagatgcatacaagtgttttaactctttggtgcttaaggacacagtgtcctggaattctatgctgactggatattcacagcacggtttgagtgccgatgccttgaagttcttcagatgtatgtgttcggaaaatgttagaaccgatgagtatgcattttctgcggctctgcggtcctcttctgaacttgctgtgcttcagttaggtaaacaaatacatggtttagtcatccattctggttttgcttccaatgattttgtttccagctcgctaatcttcatgtactctaagagtggcattattgacgatgcacggaaatcttttgaggaggcagataagagtagttcagtgccttggaatgctatgatatttggttatgcacaacatggacaagctgaaaacgtagacatacttttcaatgagatgctgcaacgtaaggctcctttggatcacataacgtttgttggcctaattacttcctgcagtcatgctggtcttgtagatgaagggtcagagattctcaatacaatggaaactaagtatggagttcctcttcgaatggagcactatgcatgtggtgttgatctgtatgggagggctggacagcttgataaagcaaaaaagctaattgattctatgccatttgaaccagatgccatggtatggatgaccctattgggtgcttgcagaatccatgggaatgtggaactagcaagcgatgtggccagccatctatttgtggcagaacctagacagcactctacctatgttctcctgtccagcatgtattctggtcttgggatgtggagtgatagggcaacagtgcagagggtaatgaagaaacgaggattaagcaaagtccctgggtggagcttgattgaggtgaagaatgaggtgcattctttcaatgcagaggataaatcacacccaaagatggatgagatctatgagatgttaagggtgttgcttcaagtagagcagatgctttctaattgtgaagatgaagatattctcatgataacttccagtggcatatgaacttgaattttgatagtccactattgtgtacgatatgttctcatccagatagtgttattccttaagtaaacatatatcacaaatattatttttctgaccatttatttggttagaattttgtgtatttctttgcacctagcatatttaaatagtactatcaagagctttaattta
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| CDS seq | atgcgccaccaccacctcgccgtcgccgccgcgaggtcccacgcctccctcctcaagtccggcttcgccgcccccacgccctggaaccagctcctcaccgcctactcccgctcctcccccgatggcctcgccgccgcgcgccgggtgttcgacgaggtgccccgccgcgacgaggtctcctggaacgcgctcctcgccgcacacgccgcgtccggcgcgcacccggaagcatggcgcctcctccgggccatgcacgcgcaggggctcgcttccaacacgttcgccctcggctcggccctccgctccgccgccgtagcgcggcgtcctgccatcggcgcccaactgcagtcgctcgctttgaaatccggccttgccaacaatgtgttcgcggcaagtgcattacttgatgtgtatgctaaatgtggccgcgtgagggatgcccgacaggtgtttgatggaatgccagagcggaacactgtttcttggaatgcactcattgccgggtatactgaatctggggacatggcatctgcactggagctgtttcttgagatggaaagagaaggtttggctccagatgaagcaacatttgcgtcgctgctcacagcagttgagggcccaagctgtttcttgatgcaccagttgcatgggaagattgtgaagtatggatctgcgttagggctgacagtgttgaatgcagcaatcactgcatattcacaatgtgggtccctgaaagactctagaaggatctttgatggaattggggacattagggatttgatctcatggaatgcgatgcttggagcttacactcacaatggaatggacgacgaggcgatgaaattctttgttaggatgatgcaagagagtggagttcatcctgacatgtatagtttcacaagtatcataagttcatgttcagagcatgggcatgatgatcatcaagggagagtaattcatgggttggtgatcaagagtgctctggaaggagtcacgcctgtttgtaatgctctgattgccatgtacactaggtacaatgagaattgcatgatggaagatgcatacaagtgttttaactctttggtgcttaaggacacagtgtcctggaattctatgctgactggatattcacagcacggtttgagtgccgatgccttgaagttcttcagatgtatgtgttcggaaaatgttagaaccgatgagtatgcattttctgcggctctgcggtcctcttctgaacttgctgtgcttcagttaggtaaacaaatacatggtttagtcatccattctggttttgcttccaatgattttgtttccagctcgctaatcttcatgtactctaagagtggcattattgacgatgcacggaaatcttttgaggaggcagataagagtagttcagtgccttggaatgctatgatatttggttatgcacaacatggacaagctgaaaacgtagacatacttttcaatgagatgctgcaacgtaaggctcctttggatcacataacgtttgttggcctaattacttcctgcagtcatgctggtcttgtagatgaagggtcagagattctcaatacaatggaaactaagtatggagttcctcttcgaatggagcactatgcatgtggtgttgatctgtatgggagggctggacagcttgataaagcaaaaaagctaattgattctatgccatttgaaccagatgccatggtatggatgaccctattgggtgcttgcagaatccatgggaatgtggaactagcaagcgatgtggccagccatctatttgtggcagaacctagacagcactctacctatgttctcctgtccagcatgtattctggtcttgggatgtggagtgatagggcaacagtgcagagggtaatgaagaaacgaggattaagcaaagtccctgggtggagcttgattgaggtgaagaatgaggtgcattctttcaatgcagaggataaatcacacccaaagatggatgagatctatgagatgttaagggtgttgcttcaagtagagcagatgctttctaattgtgaagatgaagatattctcatgataacttccagtggcatatga
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| Protein seq | MRHHHLAVAAARSHASLLKSGFAAPTPWNQLLTAYSRSSPDGLAAARRVFDEVPRRDEVSWNALLAAHAASGAHPEAWRLLRAMHAQGLASNTFALGSALRSAAVARRPAIGAQLQSLALKSGLANNVFAASALLDVYAKCGRVRDARQVFDGMPERNTVSWNALIAGYTESGDMASALELFLEMEREGLAPDEATFASLLTAVEGPSCFLMHQLHGKIVKYGSALGLTVLNAAITAYSQCGSLKDSRRIFDGIGDIRDLISWNAMLGAYTHNGMDDEAMKFFVRMMQESGVHPDMYSFTSIISSCSEHGHDDHQGRVIHGLVIKSALEGVTPVCNALIAMYTRYNENCMMEDAYKCFNSLVLKDTVSWNSMLTGYSQHGLSADALKFFRCMCSENVRTDEYAFSAALRSSSELAVLQLGKQIHGLVIHSGFASNDFVSSSLIFMYSKSGIIDDARKSFEEADKSSSVPWNAMIFGYAQHGQAENVDILFNEMLQRKAPLDHITFVGLITSCSHAGLVDEGSEILNTMETKYGVPLRMEHYACGVDLYGRAGQLDKAKKLIDSMPFEPDAMVWMTLLGACRIHGNVELASDVASHLFVAEPRQHSTYVLLSSMYSGLGMWSDRATVQRVMKKRGLSKVPGWSLIEVKNEVHSFNAEDKSHPKMDEIYEMLRVLLQVEQMLSNCEDEDILMITSSGI |
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| Function | Putative pentatricopeptide repeat-containing protein At3g25970 [UniProtKB/Swiss-Prot:Q9LU94] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsGoSa_08g0013590 | OsGoSa_08g0013590.01 | Chr08 | 18719340 | 18721856 | + | NAM | ||
| CDS seq | atgcgccaccaccacctcgccgtcgccgccgcgaggtcccacgcctccctcctcaagtccggcttcgccgcccccacgccctggaaccagctcctcaccgcctactcccgctcctcccccgatggcctcgccgccgcgcgccgggtgttcgacgaggtgccccgccgcgacgaggtctcctggaacgcgctcctcgccgcacacgccgcgtccggcgcgcacccggaagcatggcgcctcctccgggccatgcacgcgcaggggctcgcttccaacacgttcgccctcggctcggccctccgctccgccgccgtagcgcggcgtcctgccatcggcgcccaactgcagtcgctcgctttgaaatccggccttgccaacaatgtgttcgcggcaagtgcattacttgatgtgtatgctaaatgtggccgcgtgagggatgcccgacaggtgtttgatggaatgccagagcggaacactgtttcttggaatgcactcattgccgggtatactgaatctggggacatggcatctgcactggagctgtttcttgagatggaaagagaaggtttggctccagatgaagcaacatttgcgtcgctgctcacagcagttgagggcccaagctgtttcttgatgcaccagttgcatgggaagattgtgaagtatggatctgcgttagggctgacagtgttgaatgcagcaatcactgcatattcacaatgtgggtccctgaaagactctagaaggatctttgatggaattggggacattagggatttgatctcatggaatgcgatgcttggagcttacactcacaatggaatggacgacgaggcgatgaaattctttgttaggatgatgcaagagagtggagttcatcctgacatgtatagtttcacaagtatcataagttcatgttcagagcatgggcatgatgatcatcaagggagagtaattcatgggttggtgatcaagagtgctctggaaggagtcacgcctgtttgtaatgctctgattgccatgtacactaggtacaatgagaattgcatgatggaagatgcatacaagtgttttaactctttggtgcttaaggacacagtgtcctggaattctatgctgactggatattcacagcacggtttgagtgccgatgccttgaagttcttcagatgtatgtgttcggaaaatgttagaaccgatgagtatgcattttctgcggctctgcggtcctcttctgaacttgctgtgcttcagttaggtaaacaaatacatggtttagtcatccattctggttttgcttccaatgattttgtttccagctcgctaatcttcatgtactctaagagtggcattattgacgatgcacggaaatcttttgaggaggcagataagagtagttcagtgccttggaatgctatgatatttggttatgcacaacatggacaagctgaaaacgtagacatacttttcaatgagatgctgcaacgtaaggctcctttggatcacataacgtttgttggcctaattacttcctgcagtcatgctggtcttgtagatgaagggtcagagattctcaatacaatggaaactaagtatggagttcctcttcgaatggagcactatgcatgtggtgttgatctgtatgggagggctggacagcttgataaagcaaaaaagctaattgattctatgccatttgaaccagatgccatggtatggatgaccctattgggtgcttgcagaatccatgggaatgtggaactagcaagcgatgtggccagccatctatttgtggcagaacctagacagcactctacctatgttctcctgtccagcatgtattctggtcttgggatgtggagtgatagggcaacagtgcagagggtaatgaagaaacgaggattaagcaaagtccctgggtggagcttgattgaggtgaagaatgaggtgcattctttcaatgcagaggataaatcacacccaaagatggatgagatctatgagatgttaagggtgttgcttcaagtagagcagatgctttctaattgtgaagatgaagatattctcatgataacttccagtggcatatga
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| Protein seq | MRHHHLAVAAARSHASLLKSGFAAPTPWNQLLTAYSRSSPDGLAAARRVFDEVPRRDEVSWNALLAAHAASGAHPEAWRLLRAMHAQGLASNTFALGSALRSAAVARRPAIGAQLQSLALKSGLANNVFAASALLDVYAKCGRVRDARQVFDGMPERNTVSWNALIAGYTESGDMASALELFLEMEREGLAPDEATFASLLTAVEGPSCFLMHQLHGKIVKYGSALGLTVLNAAITAYSQCGSLKDSRRIFDGIGDIRDLISWNAMLGAYTHNGMDDEAMKFFVRMMQESGVHPDMYSFTSIISSCSEHGHDDHQGRVIHGLVIKSALEGVTPVCNALIAMYTRYNENCMMEDAYKCFNSLVLKDTVSWNSMLTGYSQHGLSADALKFFRCMCSENVRTDEYAFSAALRSSSELAVLQLGKQIHGLVIHSGFASNDFVSSSLIFMYSKSGIIDDARKSFEEADKSSSVPWNAMIFGYAQHGQAENVDILFNEMLQRKAPLDHITFVGLITSCSHAGLVDEGSEILNTMETKYGVPLRMEHYACGVDLYGRAGQLDKAKKLIDSMPFEPDAMVWMTLLGACRIHGNVELASDVASHLFVAEPRQHSTYVLLSSMYSGLGMWSDRATVQRVMKKRGLSKVPGWSLIEVKNEVHSFNAEDKSHPKMDEIYEMLRVLLQVEQMLSNCEDEDILMITSSGI
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.935927 | 3.754656 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_08g0375800 | RBH | 0.152336 | 0.416598 | 0.496437 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os08g28830 | RBH | 0.097540 | 0.265299 | 0.138626 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os08g0375800 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_08g0014180 | RBH | 0.037738 | 1.042563 | 0.746731 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_08g0014080 | RBH | 0.0 | 0.841135 | 0.510058 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_08g0014070 | RBH | 0.0 | 0.891069 | 0.793881 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_08g0014300 | RBH | 0.057005 | 0.022951 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_08g0014080 | RBH | 0.829059 | 1.362830 | 2.246242 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_08G0278800 | SBH | 1.910243 | 3.8707085 | 3.993994 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_08g0014130 | RBH | 0.036914 | 0.127451 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_08G0301400 | RBH | 1.239548 | 1.793301 | 3.808495 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_08g0013640 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_08g0013700 | RBH | 0.0 | 2.326940 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_08g0014380 | RBH | 0.146222 | 0.0 | 0.091462 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_08g0013740 | RBH | 0.0 | 0.550921 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_08G013730 | RBH | 0.0 | 0.533230 | 0.242321 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_08g0013920 | RBH | 0.189946 | 1.559034 | 1.545720 |
