Basic Info |
Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
OsGoSa_08g0010590 | OGI:05066740 | 16/16 | GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | Chr08:13533870-13534562 | ||||||||
Gene Symbol | - | ||||||||||
DNA seq | ttagttcctactaccagaagtctcaccgggaacgttgctctgcttgttgatcttcgatggtggaggggcaactgtcttgtcagctgtaacgggtaggatcttcttgcccgtggggtcaccgagcggtgatttgtcgatgggcctccagattggagcaatacgaggtgcattgctagaactgacaacagtcgggtgacctggtgctggcgacacttgctgcgggtgctgacgaaggagcgtaccgcctctttgtagctgtagcgagctgttgttctcctggcattgcttaccctgctggcgttggtgttgtaggcttgaaacgattgccggtggaacaatgcgacctttgacggtgcccttgacaataatccgttgaggcggaggttgcacattcaggtgtcgattggtgtcatgggcagtgctggtaacttgtgaatcacgacgaactgcctttgctgttcttggaagaggacaatcactgaaacgatgtcctggcttacgacagttgcgacagaatcgacttgcttggcctcggggtgcaggcttctgattatgcactttggcagctgaaactggaacacacagtgatttacgaacctccctggcgacgttgcttcttccatggttggcttccactggagttgtggttggtgaaagagtagaagggttgagactgttgttgtcgaccgccat
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CDS seq | atggcggtcgacaacaacagtctcaacccttctactctttcaccaaccacaactccagtggaagccaaccatggaagaagcaacgtcgccagggaggttcgtaaatcactgtgtgttccagtttcagctgccaaagtgcataatcagaagcctgcaccccgaggccaagcaagtcgattctgtcgcaactgtcgtaagccaggacatcgtttcagtgattgtcctcttccaagaacagcaaaggcagttcgtcgtgattcacaagttaccagcactgcccatgacaccaatcgacacctgaatgtgcaacctccgcctcaacggattattgtcaagggcaccgtcaaaggtcgcattgttccaccggcaatcgtttcaagcctacaacaccaacgccagcagggtaagcaatgccaggagaacaacagctcgctacagctacaaagaggcggtacgctccttcgtcagcacccgcagcaagtgtcgccagcaccaggtcacccgactgttgtcagttctagcaatgcacctcgtattgctccaatctggaggcccatcgacaaatcaccgctcggtgaccccacgggcaagaagatcctacccgttacagctgacaagacagttgcccctccaccatcgaagatcaacaagcagagcaacgttcccggtgagacttctggtagtaggaactaa
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Protein seq | MAVDNNSLNPSTLSPTTTPVEANHGRSNVAREVRKSLCVPVSAAKVHNQKPAPRGQASRFCRNCRKPGHRFSDCPLPRTAKAVRRDSQVTSTAHDTNRHLNVQPPPQRIIVKGTVKGRIVPPAIVSSLQHQRQQGKQCQENNSSLQLQRGGTLLRQHPQQVSPAPGHPTVVSSSNAPRIAPIWRPIDKSPLGDPTGKKILPVTADKTVAPPPSKINKQSNVPGETSGSRN |
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Function | - |
Transcripts
Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
OsGoSa_08g0010590 | OsGoSa_08g0010590.01 | Chr08 | 13533870 | 13534562 | - | NAM | ||
CDS seq | atggcggtcgacaacaacagtctcaacccttctactctttcaccaaccacaactccagtggaagccaaccatggaagaagcaacgtcgccagggaggttcgtaaatcactgtgtgttccagtttcagctgccaaagtgcataatcagaagcctgcaccccgaggccaagcaagtcgattctgtcgcaactgtcgtaagccaggacatcgtttcagtgattgtcctcttccaagaacagcaaaggcagttcgtcgtgattcacaagttaccagcactgcccatgacaccaatcgacacctgaatgtgcaacctccgcctcaacggattattgtcaagggcaccgtcaaaggtcgcattgttccaccggcaatcgtttcaagcctacaacaccaacgccagcagggtaagcaatgccaggagaacaacagctcgctacagctacaaagaggcggtacgctccttcgtcagcacccgcagcaagtgtcgccagcaccaggtcacccgactgttgtcagttctagcaatgcacctcgtattgctccaatctggaggcccatcgacaaatcaccgctcggtgaccccacgggcaagaagatcctacccgttacagctgacaagacagttgcccctccaccatcgaagatcaacaagcagagcaacgttcccggtgagacttctggtagtaggaactaa
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Protein seq | MAVDNNSLNPSTLSPTTTPVEANHGRSNVAREVRKSLCVPVSAAKVHNQKPAPRGQASRFCRNCRKPGHRFSDCPLPRTAKAVRRDSQVTSTAHDTNRHLNVQPPPQRIIVKGTVKGRIVPPAIVSSLQHQRQQGKQCQENNSSLQLQRGGTLLRQHPQQVSPAPGHPTVVSSSNAPRIAPIWRPIDKSPLGDPTGKKILPVTADKTVAPPPSKINKQSNVPGETSGSRN
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Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
Leaf | Root | Panicle | |
FPKM | 0.0 | 0.0 | None |
Homologues
Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
---|---|---|---|---|---|
Leaf | Root | Panicle | |||
Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
Nipponbare | IRGSP 1.0 | MSU | LOC_Os09g17170 | SBH | 0.0 | 0.0 | 0.0 |
Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_08g0010170 | SBH | 0.0 | 0.0 | 0.0 |
KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_08g0011060 | SBH | 0.0 | 0.0 | 0.0 |
CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_08g0010360 | SBH | 0.0 | 0.0 | 0.0 |
ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_08g0010230 | SBH | 0.0 | 0.0 | None |
PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_08g0010960 | RBH | 0.0 | 0.0 | 0.0 |
Minghui 63 | MH63RS3 | HZAU | OsMH63_12G0186400 | SBH | 0 | 0.005682 | 0 |
IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_08g0011020 | RBH | 0.0 | 0.0 | 0.0 |
Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_02G0497100 | SBH | 0 | 0 | 0 |
LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_08g0012560 | SBH | 0.0 | 0.0 | None |
KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_08g0010620 | SBH | 0.0 | 0.0 | None |
GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_05g0016280 | RBH | 0.0 | 0.0 | None |
LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_08g0011370 | RBH | 0.0 | 0.0 | 0.0 |
LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_08g0012670 | SBH | 0.0 | 0.0 | None |
N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_08G010810 | RBH | 0.0 | 0.0 | 0.0 |
NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_08g0012840 | SBH | 0.0 | 0.0 | 0.0 |