Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsGoSa_08g0009160 | OGI:08030220 | 16/16 | GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | Chr08:10583502-10585589 | ||||||||
| Gene Symbol | CCR18, OsCCR, CCR, OsCCR18 | ||||||||||
| DNA seq | acttcactacttcagcacacactgaacttgttgcaaagagagacatatagtatatagttagtagcttaatttgcagcgctaataagctctagctttctcttcttcctagcaaattataattaacactaggttctagctagcatgggtgtcgagaagacgacggcgaacggcggcagtggcgccgcggcggtctccggcggagggcgcaccgtctgcgtcaccggcgccggcgggttcatcgcgtcgtggctcgtcaagctcctcctcgagaagggctacgccgtccgcggcaccgttcggaaccctggtatgtatatatattgttatcggtagtttttaagaaatccatgtagattaatacgtaattatgtgtgtattatataaaagtatttttgcagtttgtttggtgttccagatccacgctagctgggtttaatttttttatgttaaatcatagtggtttaaaaattatattttatttaaaatgagattaaaataatttattcaaatgttaccaatataattatgtatttggatttgtagagttataaatatccaactctgaaaatcttagatcaggatatgtcgaacaggaccttcatgttgaaacacatgataaaaaaacatactccagatcttatgagcaaaacatcgtacatacacatgccgttgcagcaatatatcggggatgctgagaaataaagaggcaacaatcaactatcacaatctcctaatctttgcaaatcccgatattaatatatctcaaccgtttgaccctcgatcgattaatcttataattaagtaattagcgaagaacacggccggcccatatggctggctgacacaccgcgctcgatcgagaaccctggtagcaacagaaagggtatcaaaattactcactaatgatgtgattagtcagcgctagctaattaattctagtttctttagctaactcattaactaatgaattacttctaattaattgctgcagatgacgctgccaagaacgcgcatcttatggcgctggccggtgccgcggagcggctgaccctcgtccgggcggagctgctcgacaaggagagcctcgccgccgcgttcgccggctgcgagggcgtcttccacaccgcctcccccatcaccgacgacccggtacgtgactcatcacctgcaccggccggccgccggcgacgacgagacgacgtcgccgtacgtgttcgactgtctaagagagactgaccggaatgcatatgctcgcaggagaagatgatcgagccggcggtgagcggggcgaggaacgtgatcaccgcggcggcggacgccggcggcgtccgccgcgtggtgatgacgtcgtcgatcggcgccgtgtacatgggcggcggcggcggcgaggaggtggacgagacgtgctggagcgacctcgaccactgcagggacaccggaaactggtactgctacgccaagacggtggcggagcaggcggcgtgggagctcgccaaggagcggcggctggacctcgtcgtcgtcaacccgtcgctggtgctcggcccgctgctgcagcgcggggtgaacgccagcacgtggcacgtgctcaagtacctggacggctcggcgcgcacctacgccgacgcggcgcaggcgtacgtgcacgtccgcgacgtcgcggacgctcacgcgcgcgcctacgagtcccccgccgcgcgcggccgctacctctgcgccggccgcacgctgcaccgcggcgaggtgtgccgcatcctggccgccctcttcccggggtacccggtgcccaccaggtgcaagggcgacgccggcgagacggccgaggggtaccggttcagcagccgcaagctggcggagctcggtgtcgccgtcatgccggcgagccagtgcctgtacgacaccgtcgtcagcctccaggacaagggcctgcttcccttcgtccctgccgccgccatgccgtgagctagcgatcgccggcgcgccgcttttgttttacataccgctccggccggccgatgatgaccacggcgacgtgtcgccaccggctggcctgcgtgcgtacgtgcctgtatgttcgtcggaagatca
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| CDS seq | atgggtgtcgagaagacgacggcgaacggcggcagtggcgccgcggcggtctccggcggagggcgcaccgtctgcgtcaccggcgccggcgggttcatcgcgtcgtggctcgtcaagctcctcctcgagaagggctacgccgtccgcggcaccgttcggaaccctgatgacgctgccaagaacgcgcatcttatggcgctggccggtgccgcggagcggctgaccctcgtccgggcggagctgctcgacaaggagagcctcgccgccgcgttcgccggctgcgagggcgtcttccacaccgcctcccccatcaccgacgacccggtacgtgactcatcacctgcaccggccggccgccggcgacgacgagacgacgtcgccgagaagatgatcgagccggcggtgagcggggcgaggaacgtgatcaccgcggcggcggacgccggcggcgtccgccgcgtggtgatgacgtcgtcgatcggcgccgtgtacatgggcggcggcggcggcgaggaggtggacgagacgtgctggagcgacctcgaccactgcagggacaccggaaactggtactgctacgccaagacggtggcggagcaggcggcgtgggagctcgccaaggagcggcggctggacctcgtcgtcgtcaacccgtcgctggtgctcggcccgctgctgcagcgcggggtgaacgccagcacgtggcacgtgctcaagtacctggacggctcggcgcgcacctacgccgacgcggcgcaggcgtacgtgcacgtccgcgacgtcgcggacgctcacgcgcgcgcctacgagtcccccgccgcgcgcggccgctacctctgcgccggccgcacgctgcaccgcggcgaggtgtgccgcatcctggccgccctcttcccggggtacccggtgcccaccaggtgcaagggcgacgccggcgagacggccgaggggtaccggttcagcagccgcaagctggcggagctcggtgtcgccgtcatgccggcgagccagtgcctgtacgacaccgtcgtcagcctccaggacaagggcctgcttcccttcgtccctgccgccgccatgccgtga
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| Protein seq | MGVEKTTANGGSGAAAVSGGGRTVCVTGAGGFIASWLVKLLLEKGYAVRGTVRNPDDAAKNAHLMALAGAAERLTLVRAELLDKESLAAAFAGCEGVFHTASPITDDPVRDSSPAPAGRRRRRDDVAEKMIEPAVSGARNVITAAADAGGVRRVVMTSSIGAVYMGGGGGEEVDETCWSDLDHCRDTGNWYCYAKTVAEQAAWELAKERRLDLVVVNPSLVLGPLLQRGVNASTWHVLKYLDGSARTYADAAQAYVHVRDVADAHARAYESPAARGRYLCAGRTLHRGEVCRILAALFPGYPVPTRCKGDAGETAEGYRFSSRKLAELGVAVMPASQCLYDTVVSLQDKGLLPFVPAAAMP |
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| Function | Cinnamoyl-CoA reductase 1 [UniProtKB/Swiss-Prot:Q9S9N9] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsGoSa_08g0009160 | OsGoSa_08g0009160.02 | Chr08 | 10583502 | 10585589 | + | NAM | ||
| CDS seq | atgggtgtcgagaagacgacggcgaacggcggcagtggcgccgcggcggtctccggcggagggcgcaccgtctgcgtcaccggcgccggcgggttcatcgcgtcgtggctcgtcaagctcctcctcgagaagggctacgccgtccgcggcaccgttcggaaccctgatgacgctgccaagaacgcgcatcttatggcgctggccggtgccgcggagcggctgaccctcgtccgggcggagctgctcgacaaggagagcctcgccgccgcgttcgccggctgcgagggcgtcttccacaccgcctcccccatcaccgacgacccggagaagatgatcgagccggcggtgagcggggcgaggaacgtgatcaccgcggcggcggacgccggcggcgtccgccgcgtggtgatgacgtcgtcgatcggcgccgtgtacatgggcggcggcggcggcgaggaggtggacgagacgtgctggagcgacctcgaccactgcagggacaccggaaactggtactgctacgccaagacggtggcggagcaggcggcgtgggagctcgccaaggagcggcggctggacctcgtcgtcgtcaacccgtcgctggtgctcggcccgctgctgcagcgcggggtgaacgccagcacgtggcacgtgctcaagtacctggacggctcggcgcgcacctacgccgacgcggcgcaggcgtacgtgcacgtccgcgacgtcgcggacgctcacgcgcgcgcctacgagtcccccgccgcgcgcggccgctacctctgcgccggccgcacgctgcaccgcggcgaggtgtgccgcatcctggccgccctcttcccggggtacccggtgcccaccaggtgcaagggcgacgccggcgagacggccgaggggtaccggttcagcagccgcaagctggcggagctcggtgtcgccgtcatgccggcgagccagtgcctgtacgacaccgtcgtcagcctccaggacaagggcctgcttcccttcgtccctgccgccgccatgccgtga
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| Protein seq | MGVEKTTANGGSGAAAVSGGGRTVCVTGAGGFIASWLVKLLLEKGYAVRGTVRNPDDAAKNAHLMALAGAAERLTLVRAELLDKESLAAAFAGCEGVFHTASPITDDPEKMIEPAVSGARNVITAAADAGGVRRVVMTSSIGAVYMGGGGGEEVDETCWSDLDHCRDTGNWYCYAKTVAEQAAWELAKERRLDLVVVNPSLVLGPLLQRGVNASTWHVLKYLDGSARTYADAAQAYVHVRDVADAHARAYESPAARGRYLCAGRTLHRGEVCRILAALFPGYPVPTRCKGDAGETAEGYRFSSRKLAELGVAVMPASQCLYDTVVSLQDKGLLPFVPAAAMP
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsGoSa_08g0009160 | OsGoSa_08g0009160.01 | Chr08 | 10583502 | 10585589 | + | NAM | ||
| CDS seq | atgggtgtcgagaagacgacggcgaacggcggcagtggcgccgcggcggtctccggcggagggcgcaccgtctgcgtcaccggcgccggcgggttcatcgcgtcgtggctcgtcaagctcctcctcgagaagggctacgccgtccgcggcaccgttcggaaccctgatgacgctgccaagaacgcgcatcttatggcgctggccggtgccgcggagcggctgaccctcgtccgggcggagctgctcgacaaggagagcctcgccgccgcgttcgccggctgcgagggcgtcttccacaccgcctcccccatcaccgacgacccggtacgtgactcatcacctgcaccggccggccgccggcgacgacgagacgacgtcgccgagaagatgatcgagccggcggtgagcggggcgaggaacgtgatcaccgcggcggcggacgccggcggcgtccgccgcgtggtgatgacgtcgtcgatcggcgccgtgtacatgggcggcggcggcggcgaggaggtggacgagacgtgctggagcgacctcgaccactgcagggacaccggaaactggtactgctacgccaagacggtggcggagcaggcggcgtgggagctcgccaaggagcggcggctggacctcgtcgtcgtcaacccgtcgctggtgctcggcccgctgctgcagcgcggggtgaacgccagcacgtggcacgtgctcaagtacctggacggctcggcgcgcacctacgccgacgcggcgcaggcgtacgtgcacgtccgcgacgtcgcggacgctcacgcgcgcgcctacgagtcccccgccgcgcgcggccgctacctctgcgccggccgcacgctgcaccgcggcgaggtgtgccgcatcctggccgccctcttcccggggtacccggtgcccaccaggtgcaagggcgacgccggcgagacggccgaggggtaccggttcagcagccgcaagctggcggagctcggtgtcgccgtcatgccggcgagccagtgcctgtacgacaccgtcgtcagcctccaggacaagggcctgcttcccttcgtccctgccgccgccatgccgtga
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| Protein seq | MGVEKTTANGGSGAAAVSGGGRTVCVTGAGGFIASWLVKLLLEKGYAVRGTVRNPDDAAKNAHLMALAGAAERLTLVRAELLDKESLAAAFAGCEGVFHTASPITDDPVRDSSPAPAGRRRRRDDVAEKMIEPAVSGARNVITAAADAGGVRRVVMTSSIGAVYMGGGGGEEVDETCWSDLDHCRDTGNWYCYAKTVAEQAAWELAKERRLDLVVVNPSLVLGPLLQRGVNASTWHVLKYLDGSARTYADAAQAYVHVRDVADAHARAYESPAARGRYLCAGRTLHRGEVCRILAALFPGYPVPTRCKGDAGETAEGYRFSSRKLAELGVAVMPASQCLYDTVVSLQDKGLLPFVPAAAMP
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
| A5 | Chr08 | 10584650 | 10584759 | + | OsGoSa_08g0009160.01 | OsGoSa_08g0009160.01,OsGoSa_08g0009160.02 | All |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_08g0277200 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os08g17500 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os08g0277200 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_08g0009550 | RBH | 0.0 | 0.0 | 3.825758 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_08g0009670 | RBH | 0.0 | 0.0 | 0.440511 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_08g0009740 | RBH | 0.0 | 0.0 | 0.000000 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_08g0009610 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_08g0009540 | RBH | 0.0 | 0.0 | 0.000000 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_08G0164800 | RBH | 0.1654295 | 0.3193235 | 0.3645655 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_08g0009570 | RBH | 0.0 | 0.0 | 0.000000 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_08G0165700 | RBH | 0.725304 | 0.0490755 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_08g0009090 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_08g0009300 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_08g0009960 | RBH | 0.0 | 0.0 | 0.213768 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_08g0009240 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_08G009450 | RBH | 0.0 | 0.0 | 1.153430 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_08g0009390 | RBH | 0.0 | 0.0 | 1.072726 |
