Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsGoSa_08g0002870 | OGI:08007540 | 16/16 | GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | Chr08:2485375-2491085 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | gaattaaatcgaacttttacagatcaagtacgcagttgcaatagacaagtcacaagtatcgtcaccaaaaggagaaagaacagttgaacaaatcttccaacaacatccaggcactggaatctctaacccagccagatagacacctcaggcctcagccaccaaaatccagaccacctaacaaaacagcttaaatgatgtctgtcaaatggcttgaaacataaaccactgattcaataagcatgcatggagaattttaacaaacataccatgctaaaccggggtgggcttgattttaattgcagggagagggctaatattcgcaatcaagatcctcacaatgatgtgcactctttcatcaccctgtgggtagaatattgtgatcttcctgagttttacacaattgaacatttcttctatttctctgcaagtaggatcaattgctgcagcagcatctgggtaatcctcatagtcatcagatccatactgataacaagaatgaaagacaccatcaaactcaagccatgagcacaaatagcaatatggaaggggctgaggtattatatcttaccttgttaagttgcaggtgaagtttttctatgttaggtgagcgccgaagcaagaaaagtagaggatagcaaccatctctcaaaaaccactcacctagcttcaaatatttcaggttgctgaatgtcttacaccttggaaaactacggattaacacatttggcaccacctgccaacaagtccgaccatgttttaggaaaaccatataaaaaaacacatataagaaactgttaaaaggaggtcacatacatcttcataggcagttggagaaaccaattccaagcttgtgacattggaaagagcagggataatattgcagtcaacagcagaattttggaaagagagttcaaaaaagtaaaatgtggcccttttcactgatgacacgtccacgagctgaatatttctgtttggaatctcatctagatgcagggtaactaggtttggcatatctatcataagatgctcaaatttTGggggggaaatgctctgtggtctctgtagagttaatgagcaaattcttcaatgtggtggaggaaaacatggtgacaatgatggcacagtttttcaactccagatcctctaagaccgggcaacaagaagagagcttcttgacaaaactgtcatctataatgaaatggcaaaggtgcaagatagacaagtagaccgaggtgaacggaaagggataaccatcaattgaaagaagattggtgccacaatgctccataatgccaagagcccaggcattgctcctaagggcatgacgaatccatggatggatgtcagaataatcaagggaatcatcagagtggttgcaggtggcaagaataaaaagtgcatccagtggcacaggtctgcggtacgggagcaaattgtcaacaaacttcttgaaacttttcatgctgctgaactttgctgcatcagctttgagccactttgtagatgaccagacattctgccacctccgcgatagcacgcatgtctgcactgcctcttgcgcggttaaatagagcatgacaaagcgtagcagcccgtctggtagtctgctaatcctgtcaggcgcattctcctcattgatagaggtggtcatccctgtcgctggaagaacttgctctatcagggacattgaatcgagcagcttccgtgcaaggtgttgtctctacaaaattaaatgatcccaagcaagggtagaagagtaagctataaaagactacaccacactagtaaaatgtcatcatgaattcaatattataagcagaaaatggaacgagattcaagcatgaggtaaagtacaatttcagtggcaatttaagaaaataatcagtagcacccgcataaccttaccttgggttttatccactagacgagaatctaggtattttttcgcgaacgcgcaaaaggattgcacgtcaatatattagcaggaaaagagtttttgttacacaacgcaatcagccagactagcttatgaggggggggggggggatagaaaacctgaagctacggactactacgacagttaaaacacaactccaaacagcggaagggaacaaagccacgctacactcccaagaaatcgccaaaaacaacaacgccggctaaagaccacatctggccctccgactccagaaccactgggatcgaagcgagcgcgaggagaatctaggtagaaatcaaatattactaatctcagtcgaaggttcgtttttcttattcttctcagaataatcccctggttccagaccaaggagcgtgcgaataacacttgtacagtagcagcaaatctgagacactaggctcaagtgcaacaaaacccaccatactgtaagaaacaacacggcattgatctctaacaccctaacagagtagaaactagaggagcagtggggatgacaagaaaaccctagtagaaccgaaagaatggactaagaagaacaggtaggagcagcacgcaccaaatagcccgtgtagtcgcgcatgcaggcccagccttggtcgcggctcgccggcgttccgccgccggcgggggcctccgggtgtcgccgccggtggccggagagaagcgtggaagtgaaatgcgacaccaacgcagaggtcggccggccccacatgtcagctgcccccccctggctgtggtctccctgagccgtacgatcgtatcgtgcggctcagatgcagtagagcaggagattttttcaaactggtccctctggttgattcgtaattacgacatgagcccctggatttttggatcgctaggcgtgtaacgaggcggatgagtctggctggcccacatgtcagtgaccaaacgccttgtgggttggctggcctaaggagagttccggcccaacaaatatggacattcacgttccggcccaactttcgctgctccgaaattatcagatgggttgtcgctgcgagacagcggctgacaagaagtagccgaacgataattcgaactccatctccaaaatcgaagataaaattgaaatgaaataaacaagcaacaacagcagaagcaagcacaagtgttggtcgcacataagaagtttgcaaatcgcaatcttgaaatggacaagtgagaaagtaccgtcatacaggaaacagaaaaacagccggattgtaaacaggaatgagaagcttcagaacacttggctgttcagaaactaagaacataattggttcgtctgatgatgatgagctcgctgttctgataattggttcctgcagacatgcactatgaacataaaggatagctgaacaagtcttccaaaaacatcatccttggtatcagaatatctaatccagccagatagacacctcagtcaccaaaatccacagatcacctaatagaatagtttaaatgatgtgtgtcaaatgcctccaaacataagccactaattcaataagcatgaatgggcaattttaagaaacataccatgataatccggatttcggaaagggcttgattttaatttcagggagagggctaatgttcgcaatcaatatcctcacaatgatgtgcacccttttatcgccctgagggtagacgatttcaatctctgtaagtttttcacaatgaaacgttcttgctgcttctttgcatggaggatctattgctgctgcagcagttggaaacttctcatactcctcagctccaagctgataacaagaataaaaaaggaaaccattaaactcaagccgtgaccaaaaacagcaatgtggaaggggggaggtgttatatcttgccttggtaagttgcaggcgaagtttttctatgtgaggtgagtaccgaagcaagaagagtagcggatagcatccatttctcagaaaccactcaccaagcttcaaccttttcaggttgtcaaatgccttacaccttggaagattacgcattaatacctttgacacctgccgacaagtccaaaggtgtatcagaaaaacacataaaaaccgataggagaaaatgttcaaaggaggtagcatacttcatcatagacagaatcacatatcagcttcaagcttgtggcatttgaaagagcactgagaatattgcagtcaacagcggaatttcgaaaagagtgttcaaaaaagtaaattgtggcctctttcactgacgacaagtccacaaggtgaatatttcttcttggaatctcctctatatgcagggtaactaagtttggcatttctatgacaagatactcaatttgtttgggcagatgttcaatgtcttctgcattgtgaatgacgaaactcttcaatgtggttgaggaaaacatggtgacatcgatgccacagcttatcaacacaagatccttcaaaaccgggcaaccagaagaaaacttcttggcaaaacagtcatttactgtaaacttgaaaagcaccaacttagacaagtgcaccgagttgaaagcaaagggataaccatctatagaaagaagcttggaaccacaacgaacgaatatgccaacttcgcgtgcattgctcctaagaacatgatgaacccatcgatggatgtcggaataatcaagggaatcatcagagttgtcgcaggcggcagaaacccaaagtcccttcagtggaacaggattgcggtacaggagcacattatcgagaaatttcttgaaacttgtgatgctgctggacttggctgcgttagcatgcagaaacatcatagatgaccagacgttctgccacctccgtgacagcacgcatgtccgcactgcctcttgtgctgttagataggacatgacatggtgcagcagcttgtcaggtaggttgctgatcctgtcagaatcattatcctcacagtgagagatggacatccctgtatctggaagaagttgttgtatcaggggcattcaatcgagcaggtgtggagcaaactggtgtctctacaaaattaaacaatcctgagcaaaggaagataataagtaagacagaaaactacactgcactagtaaatatgcagtcatgaattcattgtcgtaagcagaaaatggaaaaggagattgaaacatgaaaaaaattaacaacaatttcggtggcaattcaagaacagaaacaccaacacccacacaatcttgccatggcttttagcctttttatccgtgagaggagaatgaatctagatattcgttgcggcaatcgtcatagaaatcaaacatgactaaatcacattattatttttctttttcctcggagcaaccccttcccccagtgttccagtcccaggagcctaccaaccacagttgcagcaaagaaaatagccattgccgtggagagcatctgcaaccaactgacgatttggctcaaatgcaagaatctccgtcaaaaacaactacgggaaaaccctatatttcctgattcagggttcctagcagaggccgcgaagaagctaaggcggagcaggggcgatggaaaaccctagacgacgaatagaggcggaagaatgaactactcggagaaaatcaggtaggagaacttctcaccaagaacgacggaggcgcgcgtgcggttcaggtcttgatcgcggctgcttgcctccgctcgccggcgttctgcggccgccgggtgtcgccgccggccggagaggagaggccagaaatgcgacaccacccgacgtgggtccctgcgagccgtccgatctt
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| CDS seq | atgcccctgatacaacaacttcttccagatacagggatgtccatctctcactgtgaggataatgattctgacaggatcagcaacctacctgacaagctgctgcaccatgtcatgtcctatctaacagcacaagaggcagtgcggacatgcgtgctgtcacggaggtggcagaacgtctggtcatctatgatgtttctgcatgctaacgcagccaagtccagcagcatcacaagtttcaagaaatttctcgataatgtgctcctgtaccgcaatcctgttccactgaagggactttgggtttctgccgcctgcgacaactctgatgattcccttgattattccgacatccatcgatgggttcatcatgttcttaggagcaatgcacgcgaagttggcatattcgttcgttgtggttccaagcttctttctatagatggttatccctttgctttcaactcggtgcacttgtctaagttggtgcttttcaagtttacagtaaatgactgttttgccaagaagttttcttctggttgcccggttttgaaggatcttgtgttgataagctgtggcatcgatgtcaccatgttttcctcaaccacattgaagagtttcgtcattcacaatgcagaagacattgaacatctgcccaaacaaattgagtatcttgtcatagaaatgccaaacttagttaccctgcatatagaggagattccaagaagaaatattcaccttgtggacttgtcgtcagtgaaagaggccacaatttacttttttgaacactcttttcgaaattccgctgttgactgcaatattctcagtgctctttcaaatgccacaagcttgaagctgatatgtgattctgtctatgatgaagtgtcaaaggtattaatgcgtaatcttccaaggtgtaaggcatttgacaacctgaaaaggttgaagcttgctgaggagtatgagaagtttccaactgctgcagcagcaatagatcctccatgcaaagaagcagcaagaacgtttcattgtgaaaaacttacagagattgaaatcgtctaccctcagggcgataaaagggtgcacatcattagacaacaccttgcacggaagctgctcgattcaatgtccctgatagagcaagttcttccagcgacagggatgaccacctctatcaatgaggagaatgcgcctgacaggattagcagactaccagacgggctgctacgctttgtcatgctctatttaaccgcgcaagaggcagtgcagacatgcgtgctatcgcggaggtggcagaatgtctggtcatctacaaagtggctcaaagctgatgcagcaaagttcagcagcatgaaaagtttcaagaagtttgttgacaatttgctcccgtaccgcagacctgtgccactggatgcactttttattcttgccacctgcaaccactctgatgattcccttgattattctgacatccatccatggattcgtcatgcccttaggagcaatgcctgggctcttggcattatggagcattgtggcaccaatcttctttcaattgatgatgagattccaaacagaaatattcagctcgtggacgtgtcatcagtgaaaagggccacattttacttttttgaactctctttccaaaattctgctgttgactgcaatattatccctgctctttccaatgtcacaagcttggaattggtttctccaactgcctatgaagatgtggtgccaaatgtgttaatccgtagttttccaaggtgtaagacattcagcaacctgaaatatttgaagctaggtgagtggtttttgagagatggttgctatcctctacttttcttgcttcggcgctcacctaacatagaaaaacttcacctgcaacttaacaagtatggatctgatgactatgaggattacccagatgctgctgcagcaattgatcctacttgcagagaaatagaagaaatgttcaattgtgtaaaactcaggaagatcacaatattctacccacagggtgatgaaagagtgcacatcattgtgaggatcttgattgcgaatattagccctctccctgcaattaaaatcaagcccaccccggtttag
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| Protein seq | MPLIQQLLPDTGMSISHCEDNDSDRISNLPDKLLHHVMSYLTAQEAVRTCVLSRRWQNVWSSMMFLHANAAKSSSITSFKKFLDNVLLYRNPVPLKGLWVSAACDNSDDSLDYSDIHRWVHHVLRSNAREVGIFVRCGSKLLSIDGYPFAFNSVHLSKLVLFKFTVNDCFAKKFSSGCPVLKDLVLISCGIDVTMFSSTTLKSFVIHNAEDIEHLPKQIEYLVIEMPNLVTLHIEEIPRRNIHLVDLSSVKEATIYFFEHSFRNSAVDCNILSALSNATSLKLICDSVYDEVSKVLMRNLPRCKAFDNLKRLKLAEEYEKFPTAAAAIDPPCKEAARTFHCEKLTEIEIVYPQGDKRVHIIRQHLARKLLDSMSLIEQVLPATGMTTSINEENAPDRISRLPDGLLRFVMLYLTAQEAVQTCVLSRRWQNVWSSTKWLKADAAKFSSMKSFKKFVDNLLPYRRPVPLDALFILATCNHSDDSLDYSDIHPWIRHALRSNAWALGIMEHCGTNLLSIDDEIPNRNIQLVDVSSVKRATFYFFELSFQNSAVDCNIIPALSNVTSLELVSPTAYEDVVPNVLIRSFPRCKTFSNLKYLKLGEWFLRDGCYPLLFLLRRSPNIEKLHLQLNKYGSDDYEDYPDAAAAIDPTCREIEEMFNCVKLRKITIFYPQGDERVHIIVRILIANISPLPAIKIKPTPV |
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| Function | F-box/LRR-repeat protein At3g59190 [UniProtKB/Swiss-Prot:Q1PED9] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsGoSa_08g0002870 | OsGoSa_08g0002870.01 | Chr08 | 2485375 | 2491085 | - | NAM | ||
| CDS seq | atgcccctgatacaacaacttcttccagatacagggatgtccatctctcactgtgaggataatgattctgacaggatcagcaacctacctgacaagctgctgcaccatgtcatgtcctatctaacagcacaagaggcagtgcggacatgcgtgctgtcacggaggtggcagaacgtctggtcatctatgatgtttctgcatgctaacgcagccaagtccagcagcatcacaagtttcaagaaatttctcgataatgtgctcctgtaccgcaatcctgttccactgaagggactttgggtttctgccgcctgcgacaactctgatgattcccttgattattccgacatccatcgatgggttcatcatgttcttaggagcaatgcacgcgaagttggcatattcgttcgttgtggttccaagcttctttctatagatggttatccctttgctttcaactcggtgcacttgtctaagttggtgcttttcaagtttacagtaaatgactgttttgccaagaagttttcttctggttgcccggttttgaaggatcttgtgttgataagctgtggcatcgatgtcaccatgttttcctcaaccacattgaagagtttcgtcattcacaatgcagaagacattgaacatctgcccaaacaaattgagtatcttgtcatagaaatgccaaacttagttaccctgcatatagaggagattccaagaagaaatattcaccttgtggacttgtcgtcagtgaaagaggccacaatttacttttttgaacactcttttcgaaattccgctgttgactgcaatattctcagtgctctttcaaatgccacaagcttgaagctgatatgtgattctgtctatgatgaagtgtcaaaggtattaatgcgtaatcttccaaggtgtaaggcatttgacaacctgaaaaggttgaagcttgctgaggagtatgagaagtttccaactgctgcagcagcaatagatcctccatgcaaagaagcagcaagaacgtttcattgtgaaaaacttacagagattgaaatcgtctaccctcagggcgataaaagggtgcacatcattagacaacaccttgcacggaagctgctcgattcaatgtccctgatagagcaagttcttccagcgacagggatgaccacctctatcaatgaggagaatgcgcctgacaggattagcagactaccagacgggctgctacgctttgtcatgctctatttaaccgcgcaagaggcagtgcagacatgcgtgctatcgcggaggtggcagaatgtctggtcatctacaaagtggctcaaagctgatgcagcaaagttcagcagcatgaaaagtttcaagaagtttgttgacaatttgctcccgtaccgcagacctgtgccactggatgcactttttattcttgccacctgcaaccactctgatgattcccttgattattctgacatccatccatggattcgtcatgcccttaggagcaatgcctgggctcttggcattatggagcattgtggcaccaatcttctttcaattgatgatgagattccaaacagaaatattcagctcgtggacgtgtcatcagtgaaaagggccacattttacttttttgaactctctttccaaaattctgctgttgactgcaatattatccctgctctttccaatgtcacaagcttggaattggtttctccaactgcctatgaagatgtggtgccaaatgtgttaatccgtagttttccaaggtgtaagacattcagcaacctgaaatatttgaagctaggtgagtggtttttgagagatggttgctatcctctacttttcttgcttcggcgctcacctaacatagaaaaacttcacctgcaacttaacaagtatggatctgatgactatgaggattacccagatgctgctgcagcaattgatcctacttgcagagaaatagaagaaatgttcaattgtgtaaaactcaggaagatcacaatattctacccacagggtgatgaaagagtgcacatcattgtgaggatcttgattgcgaatattagccctctccctgcaattaaaatcaagcccaccccggtttag
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| Protein seq | MPLIQQLLPDTGMSISHCEDNDSDRISNLPDKLLHHVMSYLTAQEAVRTCVLSRRWQNVWSSMMFLHANAAKSSSITSFKKFLDNVLLYRNPVPLKGLWVSAACDNSDDSLDYSDIHRWVHHVLRSNAREVGIFVRCGSKLLSIDGYPFAFNSVHLSKLVLFKFTVNDCFAKKFSSGCPVLKDLVLISCGIDVTMFSSTTLKSFVIHNAEDIEHLPKQIEYLVIEMPNLVTLHIEEIPRRNIHLVDLSSVKEATIYFFEHSFRNSAVDCNILSALSNATSLKLICDSVYDEVSKVLMRNLPRCKAFDNLKRLKLAEEYEKFPTAAAAIDPPCKEAARTFHCEKLTEIEIVYPQGDKRVHIIRQHLARKLLDSMSLIEQVLPATGMTTSINEENAPDRISRLPDGLLRFVMLYLTAQEAVQTCVLSRRWQNVWSSTKWLKADAAKFSSMKSFKKFVDNLLPYRRPVPLDALFILATCNHSDDSLDYSDIHPWIRHALRSNAWALGIMEHCGTNLLSIDDEIPNRNIQLVDVSSVKRATFYFFELSFQNSAVDCNIIPALSNVTSLELVSPTAYEDVVPNVLIRSFPRCKTFSNLKYLKLGEWFLRDGCYPLLFLLRRSPNIEKLHLQLNKYGSDDYEDYPDAAAAIDPTCREIEEMFNCVKLRKITIFYPQGDERVHIIVRILIANISPLPAIKIKPTPV
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.000000 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_08g0149100 | RBH | 0.000000 | 0.0 | 1.295778 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os08g05470 | SBH | 0.000000 | 0.000000 | 0.000000 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os08g0149100 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_08g0003300 | RBH | 0.073797 | 0.000000 | 1.144547 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_08g0003340 | RBH | 0.038544 | 0.0 | 0.256464 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_08g0003310 | RBH | 0.0 | 0.000000 | 2.213237 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_08g0003300 | RBH | 0.049080 | 0.047103 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_08g0003130 | RBH | 0.000000 | 0.000000 | 2.042170 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_08G0043900 | RBH | 0.494926 | 0.443432 | 3.737089 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_08g0002990 | RBH | 0.0 | 0.0 | 0.161155 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_08G0048900 | RBH | 0.316679 | 0.65144 | 4.4512755 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_08g0003020 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_08g0003070 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_08g0002790 | RBH | 0.0 | 7.483784 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_08g0003140 | RBH | 0.074086 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_08g0003060 | RBH | 0.000000 | 0.000000 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_08G003000 | RBH | 0.108677 | 0.017223 | 1.984032 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_08g0002880 | RBH | 0.372611 | 1.583760 | 2.222442 |
