Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsGoSa_07g0021400 | OGI:07023770 | 16/16 | GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | Chr07:24877587-24881544 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | tcactcctcctccacccgcgaagacatcgctccacacgcgaagacttcgcttctcctcctccttgctagctcctcctcctccccggatgttctgccgctgcaccgccgcatcctcgctggatatcctccccgcatggactgccgccgccggagcctctgattcttccccgcctctgattcttccccgtgtggactgccgccgcatccccaccgtcggagccgctgcttcttccccgccgccggagccgccgcggccggttccgacctcggccccattcgccggcaccggcgctgaggtccaccgccgcgaccggagccgacctcggccccatcccccgcgcgatgactacacgacgctccagcgtgctccactggctccagcgtgctccgcgcctccccgccgctgacacacttcatcgcggcctgcccccaacggagctgacttcgccgcgcgctcctcgctccgctcctccctaccgccgccacacaccaccgcgccctgccctcgccggcgccgtggatctgtatgtcatgaagcctatctccgctgccccacacagtcgactcccccgtgaatatgcctttcggctggtatcaccatcccgtcacggccctgtggtcctgccttccaacggcactctgccgcgcctccagtggtgccgccgttgtaaggttcatagtctgcccacaccacgcactcggttctcacggacgtgtgccatcctctcttttgcaggtgagagtgcagagtgcagagtgcttcagctgaaagtgagtcttccgattcccctcttcagcccaatagtcctctatgtggattatctgaatctgaatgtacatcattttctttcactatggcttgatttacactattcgatctagctatcagttcaagtggatacaatcctattgttatcctttcaccacaatcagtagttttctgagaagttaatttctttgcatacactgatgaactctgtagtagattctatgcaagctctttcttgctcaattaattattgctcactctatagcagatcaactctggatttagacttctttggccaagcactatggctaaaatggcatgccaagcttggaatagaaaggtcaagcaatttttccaaccacggtgcagcacgtggcaatggcactaacactaatttctatcatatgtaggcagatccaagttgatgctggcacaggctttggtgaatcactgatgggtgagagacctgcagagttccttatccaacagagcaatggttgagttctttcagttgtgggatgaaattcagatggtgtagcttcaaccaggaatagccacgactccattcggtggtagctaacaggtgatggccagtttactttctcattggcttacaacctcttcttcatggcaaagaccaaatgtttatatggtgaactgcataatttcgattctttctgttcatgatgatctgttggttaatctggaaagacggaacgctagggtatttgagcagaggtctagacctacagagcaattatttggagacatcaaggagatcacgatttggaagtcggctagcattttttatcctgcagtgattatttattagtgttagttgtttattgtggtctgaggctttgcctcatacctttgtttgacagcatagtactttgtactttgtttctccttaaatcttaataaatttggtgggcctaatcctttggccaacctggcaaatcatttcagtaataaaaaaatgtgttttcctggccagattgatatatatgtatgatttctactaggctgaaattcttggcttggagaaactttgttgcatactgtagcaggagctgcagcagattgaaaattgatggtatcaaaggttcttaataatgcaagcaataagttgtcaaagaatcattgtttgattttgtagtaccaaaattccaatcacacttagtggctaatctttttattttgactaaatgccacatgttagcagcagtagcagaatttttttattttggtttcaggttttagaactgatgttatttgttgctccaaataatccaccgatattgtcaggtgggagctatttgacttgtgtggctagaagtattcgagtcaatcatctgcttgcctcggcctacttcaatagacaacggaggatgctctacatcataatcgtatgcaaagacaggtaatacacaccatatttcccttcatttgcaaagtcgtaataaactgaataagaacatgtaccacattcatatttgtctgatagatctcaaatccatatattgctaatggtctacttctcaaattggtttttacacctcaatgtttgttctgtattccgtttgtcacatattttatcaatcaattgcagttctttgaaattggatcatgacttccaacttgcagcagttaattgcattgtatcacacgttcattacaagatactcaaagcaaaaaatgacaatatgttggttagctgcttgcacttgcaatgagtaagagcatagaggttctggacttacaatctgaggtcaggatcatgttccatatatttttacatagaacactattgcatgaattgcactatttgtagatgttctatagttaatcaactatgttaccttaaatatacatggtgtgttctagattctgaaatgtttagcaaacttagtcaacatgtagattaactatcacaatttatgtcactttttcatatctagcaaacttatctaacttttcttttcaggttacaaaaaatgcaggaaaaacatgtaggctgtcgaagcaaatccatcaggaggacaccatggcatctgatgttgtctactatgcattaaagagattactggttgtttcTATtccttctttttggttgaaataatttatgttaatataatgttttcatagaagtgagctaatcttgatttgtttggttaacacgggttatgtgttgaacgtgtgatccaatagtatggctttgttacgttcttttatcagctaattgtaagtccttagcagctggaatgctagatcatgactaacaagtgaaaaggatcagtgatagttttatgctggtgcagacatgcaatgccaaataaaacatggataattccttcttgtttgtgcataattaattgtttgtgcaggcttcttagcactcagtaatttatcttttcgaagtttctatagttgtggctcatatacaagggataattttgttgctcagtctcacaaggacagctcactacctatccatctaaaatctgattacacatttgcccattaaattctactatgcacaacaagaagccacgaattctactatgcacaaccaagaagccacgactgtgctcttaattcaaatctgaatttgttaggacatattattgacgtataaccacataaataaatccaaagTAtatataatatttttgtttccccgttgcaaggtctatatgatcttacttatttggttttggtccgcatactggtagtatgcctgagagtggttatattgatgactgttaagagaatgacaagtcaatatcttgctttgataccTtttttttttgcatttttgatttagctaaaaataactatgtactgataatggttatttttattccaattacatgaggatatgttttataaattttgggtaaataggttgtgcttcagaaggtgtagtttctaaaatttttagtgtaattatgtactcgggcgatatatttcgtcaaaaacgtgcattgcacgtgagtattagtagtgtgttactgtgttacagtccattgcatagaccattgggcacacacacgctgataagcacaagatccaaaagcaagtaaccgcccatggtatactatgcatgtacgaggccgacaaaagggaaagcaagccggtgatgcgcgcgaacactgcggcatagcgacaaggccacctgtccgccat
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| CDS seq | atggcggacaggtggccttgtcgctatgccgcagtgttcgcgcgcatcaccggcttgctttcccttttgtcggcctcaggggaatcggaagactcactttcagctgaagcactctgcactctgcactctcacctgcaaaagagaggatggcacacgtccgtgagaaccgagtgcgtggtgtgggcagactatgaaccttacaacggcggcaccactggaggcgcggcagagtgccgttggaaggcaggaccacagggccgtgacgggatgatccacggcgccggcgagggcagggcgcggtggtgtgtggcggcggtagggaggagcggagcgaggagcgcgcggcgaagtcagctccgttgggggcaggccgcgatgaagtgtgtcagcggcggggaggcgcggagcacgctggagccagtggagcacgctggagcgtcgtgtagtcatcgcgcgggggatggggccgaggtcggctccggtcgcggcggtggacctcagcgccggtgccggcgaatggggccgaggtcggaaccggccgcggcggctccggcggcggggaagaagcagcggctccgacggtggggatgcggcggcagtccacacggggaagaatcagaggcggggaagaatcagaggctccggcggcggcagtccatgcggggaggatatccagcgaggatgcggcggtgcagcggcagaacatccggggaggaggaggagctagcaaggaggaggagaagcgaagtcttcgcgtgtggagcgatgtcttcgcgggtggaggaggagtga
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| Protein seq | MADRWPCRYAAVFARITGLLSLLSASGESEDSLSAEALCTLHSHLQKRGWHTSVRTECVVWADYEPYNGGTTGGAAECRWKAGPQGRDGMIHGAGEGRARWCVAAVGRSGARSARRSQLRWGQAAMKCVSGGEARSTLEPVEHAGASCSHRAGDGAEVGSGRGGGPQRRCRRMGPRSEPAAAAPAAGKKQRLRRWGCGGSPHGEESEAGKNQRLRRRQSMRGGYPARMRRCSGRTSGEEEELARRRRSEVFACGAMSSRVEEE |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsGoSa_07g0021400 | OsGoSa_07g0021400.01 | Chr07 | 24877587 | 24881544 | - | NAM | ||
| CDS seq | atggcggacaggtggccttgtcgctatgccgcagtgttcgcgcgcatcaccggcttgctttcccttttgtcggcctcaggggaatcggaagactcactttcagctgaagcactctgcactctgcactctcacctgcaaaagagaggatggcacacgtccgtgagaaccgagtgcgtggtgtgggcagactatgaaccttacaacggcggcaccactggaggcgcggcagagtgccgttggaaggcaggaccacagggccgtgacgggatgatccacggcgccggcgagggcagggcgcggtggtgtgtggcggcggtagggaggagcggagcgaggagcgcgcggcgaagtcagctccgttgggggcaggccgcgatgaagtgtgtcagcggcggggaggcgcggagcacgctggagccagtggagcacgctggagcgtcgtgtagtcatcgcgcgggggatggggccgaggtcggctccggtcgcggcggtggacctcagcgccggtgccggcgaatggggccgaggtcggaaccggccgcggcggctccggcggcggggaagaagcagcggctccgacggtggggatgcggcggcagtccacacggggaagaatcagaggcggggaagaatcagaggctccggcggcggcagtccatgcggggaggatatccagcgaggatgcggcggtgcagcggcagaacatccggggaggaggaggagctagcaaggaggaggagaagcgaagtcttcgcgtgtggagcgatgtcttcgcgggtggaggaggagtga
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| Protein seq | MADRWPCRYAAVFARITGLLSLLSASGESEDSLSAEALCTLHSHLQKRGWHTSVRTECVVWADYEPYNGGTTGGAAECRWKAGPQGRDGMIHGAGEGRARWCVAAVGRSGARSARRSQLRWGQAAMKCVSGGEARSTLEPVEHAGASCSHRAGDGAEVGSGRGGGPQRRCRRMGPRSEPAAAAPAAGKKQRLRRWGCGGSPHGEESEAGKNQRLRRRQSMRGGYPARMRRCSGRTSGEEEELARRRRSEVFACGAMSSRVEEE
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_07g0246001 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os07g40230 | RBH | 0.170914 | 0.000000 | 0.607619 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os07g0246001 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_07g0021720 | RBH | 0.0 | 0.0 | 0.000000 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_07g0021750 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_07g0021640 | RBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_07g0021510 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_07g0021600 | RBH | 0.0 | 0.000000 | 1.882939 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_07G0395400 | RBH | 0.0461935 | 0.5130755 | 0.4406255 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_07g0022030 | RBH | 0.000000 | 0.0 | 0.000000 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_07G0408300 | RBH | 0.102105 | 0.8603495 | 0.1611955 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_07g0021340 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_07g0021500 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_07g0021630 | RBH | 0.0 | 0.0 | 0.449841 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_07g0021370 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_07G021260 | RBH | 0.0 | 0.641109 | 0.398970 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_07g0021340 | RBH | 0.0 | 0.0 | 0.0 |
