Rice Gene Index (RGI): a comprehensive pan-genome database for comparative and functional genomics of Asian rice.

Basic Info

Gene ID		OGI # \| Score			Accession \| Assembly \| Annotation			Location		Links
OsGoSa_07g0018530		OGI:07061320 \| 16/16			GOBOL SAIL \| Os132424RS1 \| Gramene(+IsoSeq)			Chr07:22381717-22387054		Homologues MicroCollinearity RGI-JBrowse
Gene Symbol		SDRLK-40
DNA seq		tcaaccaatcaatgaactggaactgagtgtaaaaaaaaaaaaaacccggaaccggcagtaacaaaattggggccatgtacaaagcaaaagcaaaccaatctctacacccagagctatcaaatcacccaacacatgtggaACacacagtacatctccctagctcgatcgtccacccgatcgagagaagagcgcgtgtttcttcgtgtctatgtacagttttgtacacccaacctactactacttcttccgttttaaaatataataatttgaaagatatatcctagttcaataaatctgaagaaatggttatctagattcgttggactagaatatatccaatctagttctaaattgctatattttgatacgtacgtagtggtatacgcactcctacctgccttggagcatggtgacggtgaggtcgttggcggagtaggactcctccttgtccctgtagtacatgtcccgccccgacgacgacgacgtgcactgcagcgtgaacgtcggcgggcgcggcgtgggcagcacggaggagtcgctgccgagcgtgagcaccacgtaggggatgtccgggcggtcgtgcgcgtggtcctgcacgcacagcagcgccatgtgcacgcaccgcagcgcctccttcgcggggcacgtcccccggatcgccgggtcgatcagctcctgccctctgtccccgttccacagctgccacgcctgtcaatatcccaagacgcaacgcaactcgatcagcaaacttttttttgacaagaatgtgagtaagattgcagggaggatttgtgtgtgtgcgtgcgcttacgtagccgacgatgttgagggagccctccatgtggtggaagctgctgttcttctggcccgtgatgatctccaggatgaggatgccgaagctgtacacgtccgacctcaccgagaagagcccctccatcgcgtactccggtgacatgtagcccctgtgtcacggcgacatgtaaagtaattaacctcagtgtgttacagtgtcagagttgctgttgtgctcaggtgcttttttgcttacagtgtgccgacgacgcggttggtgttgacctggttctggtcgccgccgaagatcctggccatgccgaagtcggagatcttggggttcatgtcgcggtcgaggaggatgttgctggccttgaggtcgcggtgcaccacgcggagcctcgagtcgcggtggaggtacaggagccctcgcgccacgccttcgatgatctggaacctcgtcctccagtccaggagccctcttctctccggatctgacatgacatagcaaaacagtcacacactgccagtgtcagcttattactgtctctctgaactctctgaattttgcaagaaaaatgttgctggattctgagggtgtacgtaccgaagaggaaggcgtcgaggctcttgttgggcatgtattcgtacaccaggatcttctcctcgccctggatgcagcatcccagcaacctgacaagattgcggtgctgcagcttcgcgatcaggatcacctcgttcttgaactcctccagcccctgcccggagctccgggacagcctcttcaccgcgatctcttctcctccagggagccttccctgaatagaaccaaaccaatcatccatgcaacctcattagtactctccaacattggtgcattaattctggcatgtgattagaacatgatgatatcgatctctagctgcgtgtaccttgtagacatggccgaagcctccctctccgagcttgttcgagatgctgaagttgtcggtggccgtcgctaaggtctcgaacgcgaacagcggcagctcgcagttcttgccctcctctgatttctcgtgttcagattgcgctggccctgagaaatcctgctttgcatccctcgcaggacgcagcaacgggagttgtgcctttttcctaccaatgccaagttcctctgcgacaagataaaccgactccgtcatgtgaactgacatgccgctatttgatattcgtttcaaagttttacatctcaaattctagtgcaattcaagtttaatgatgatttaggcatgtactaattcctaactcacctttaattcgtctcctgcacttccatatgagaaggcctgatgccagcaatacaaccaccacgaccacaactacgacgacgacaacggttttccatcgCcccgagcttttatctgaggtcaaacataacagcaaaatttgtcagaaatgtgtagctgccaggcaaatgaattcataatgtcattagaagataaaatcagtttgaagaatcggtcagtttcaaagatttgatttctgaagaccttcgtgcgtttcagccaaatactcacgtgcattcacatacatcatcaggtcatatgataaactaatgatcaccatgtgtggtcagactgattgacctacatgggtcaaacacacgatttgtcccacatgttccctgtgtgctaaaactgctaaccacgacacaaaattcgtgaaagtagccacctcatgtcctcatctaaaaaagctaagaaaaaggaataatttaaaacagttaggtccttctcgcccagccgcaagatggtattcttttcccaatttgagataatctagttgatctagagcgataaagatctgtcattgtcggaacaatctttaaaccaaacaaaaataataggcatacaccgtacttttccggaagctgtcggcatccgaaacaaacggcctgcactgcataataaatcccacaagtcaccatcagaaaaatttttacatagaccttcaaatcgacgattcgacgtgcctctcgtatctcataatgcattgggtaacaatgacaagtgacaatgcgttacagatgggtgacattagcatctgaaatgcttatctccattgcatatgtcatgtaaagatatatctgggcgaaaatggatatgcttttgagttttccggggggtgAaaatgtgaaacgttggctgtttcagacttcaattttcaccccccttttcaacagtcactgttcaccaatccaaattggccaccatcttttactcgtctactccggtgaattttattccgtggactgcataaatgggagcttatctacctaatcaggaattcaggatccaacaacctcacacgcatctgcaccggattgatgctgcgttttctaatgccattttcagttcgaccacatgccaaagattccagtgaactgaacaattttctaattttTCtagaaaacgaaatgcgatgccttattctttcttaaaacaagcaaataattggcatctagtagtgtatttgtcagatcaggaactgtcagtcatttaactcgtttggatttttccagcgaaatttctgtctttgaattctaataaagcgtgtatgcacatgtgagtgtatgttatggtgtgagtgcgacgtatgtgttatatgtcgactcatgaattttttttcaaaaaaacttaaaactgtaaattaaacttcacacaacacaaatactccatatgtaaaaagaaaaagaaaagaaaaacctaacttctagttataaatctaaacataatctatttttaaattgttgttagaagctgattttttcttagacggaaggagtacgaaatattggtaaaatatagattaaactctcacctaatagagaagatgggaccttgacgtagaggtcgtatttcgctccctcggtgccggtttggaactggaagatgtccaccagctcctgcccccaggtgaggcagctgccggtgctgtagctgtacgccccgcacgagcagttgcccaggcacgccttctcgcacgagttcgcgtcgcccaCcagcgatccccacacggcgaagtccggcagcttcacgccccggatgacggtgaacccgtcgccgccaccggcgccggcgccaccggcggtcgtgttgttcctctcgctgctgcacgtcagtggaacgctcctcacgcAcccctgcgtccagttgccgttgttgtactcttgcggagattttggctcaaaacctgaacacatttgacggataatgtgtcaatgacgtgtgggtcagactccacgttatgtcgttatgactaaaaattaagggattttagctatcaaaatgtacagtgaaatgtgaacgtgatgtgcgagaaaagtcagaatcaatggattattcggtgaggagttttttaattacctgtgaagcaggtgcagatgggctcgttgtcgtcggcggtgcactcggcgttgtcgccgcacaagttgtagcggtggcaggggatggtcggctgcgaccagacgagctcccagtcgccggagccgaggagcatgtagcacgtctcgacgccgttcggccgGAgcacgaagcggtagagcgacgagttgaaggggttgaacgcgatggacatgtcgccggcgatcggcggcgggtcgccgttcaacttgaagccgtagacgtagagcgcccgccacgggatgccgacgaagttgccgctcgcccactgccccgacctccagtaggttgagttcttgccgccctggctccgccagatgtagagctgcgccgacgcgtccagccccagcgtgaagtcgccggtggccgggtcggcgtcgctcctccacgacgtgtacagcgtgcggtagccgttggtctgccggagcgcgatctccatgcccgggacgaaggtgtccgtcgggtggtggaagctctcccactctacgtccgtgccggcggcgtcgctgccggagatcacgaggttcccgtcgtcgcggatcgtcagcgtgtggttggagcgccccgcggccgacgcgttcgtccgccacgcgacgcggtcgccctccttcaccagcagctcgccggagcccgtcacggtggcggaggcggcccccgccgccgttctcacgggggcgtcgcggttcgccacccacatcaccgtctgcacgttcgacgtcgcgtacatcaccccgaggtacaccttccccgggtcgccacccgccggcgtgaagaaccccaccttgaacgtgccgttcgccgacaccagcatgtcgttcgcgcccagcgactgcccctgcgacagcgtgtgcgccgcgtcgacgccgccaccatctctcacacacagcaacacgaagaacaccaacgcgagcgcagcaatggcggccgtggaagccatcgaccacgacgacgacgatggcggcgagaagatcgagaggttcgcgagaggctagagggctcgcggcttcttggcgcgagaaaatatatgtattcacgtgtgcgagcgcgagacgagtggtgcggcgtggtcggagcgagcacttgttcgcatcatggttttgaac More
CDS seq		atggcttccacggccgccattgctgcgctcgcgttggtgttcttcgtgttgctgtgtgtgagagatggtggcggcgtcgacgcggcgcacacgctgtcgcaggggcagtcgctgggcgcgaacgacatgctggtgtcggcgaacggcacgttcaaggtggggttcttcacgccggcgggtggcgacccggggaaggtgtacctcggggtgatgtacgcgacgtcgaacgtgcagacggtgatgtgggtggcgaaccgcgacgcccccgtgagaacggcggcgggggccgcctccgccaccgtgacgggctccggcgagctgctggtgaaggagggcgaccgcgtcgcgtggcggacgaacgcgtcggccgcggggcgctccaaccacacgctgacgatccgcgacgacgggaacctcgtgatctccggcagcgacgccgccggcacggacgtagagtgggagagcttccaccacccgacggacaccttcgtcccgggcatggagatcgcgctccggcagaccaacggctaccgcacgctgtacacgtcgtggaggagcgacgccgacccggccaccggcgacttcacgctggggctggacgcgtcggcgcagctctacatctggcggagccagggcggcaagaactcaacctactggaggtcggggcagtgggcgagcggcaacttcgtcggcatcccgtggcgggcgctctacgtctacggcttcaagttgaacggcgacccgccgccgatcgccggcgacatgtccatcgcgttcaaccccttcaactcgtcgctctaccgcttcgtgcTCcggccgaacggcgtcgagacgtgctacatgctcctcggctccggcgactgggagctcgtctggtcgcagccgaccatcccctgccaccgctacaacttgtgcggcgacaacgccgagtgcaccgccgacgacaacgagcccatctgcacctgcttcacaggttttgagccaaaatctccgcaagagtacaacaacggcaactggacgcaggggTgcgtgaggagcgttccactgacgtgcagcagcgagaggaacaacacgaccgccggtggcgccggcgccggtggcggcgacgggttcaccgtcatccggggcgtgaagctgccggacttcgccgtgtggggatcgctgGtgggcgacgcgaactcgtgcgagaaggcgtgcctgggcaactgctcgtgcggggcgtacagctacagcaccggcagctgcctcacctgggggcaggagctggtggacatcttccagttccaaaccggcaccgagggagcgaaatacgacctctacgtcaaggccttctcatatggaagtgcaggagacgaattaaaggaacttggcattggtaggaaaaaggcacaactcccgttgctgcgtcctgcgagggatgcaaagcaggatttctcagggccagcgcaatctgaacacgagaaatcagaggagggcaagaactgcgagctgccgctgttcgcgttcgagaccttagcgacggccaccgacaacttcagcatctcgaacaagctcggagagggaggcttcggccatgtctacaagggaaggctccctggaggagaagagatcgcggtgaagaggctgtcccggagctccgggcaggggctggaggagttcaagaacgaggtgatcctgatcgcgaagctgcagcaccgcaatcttgtcaggttgctgggatgctgcatccagggcgaggagaagatcctggtgtacgaatacatgcccaacaagagcctcgacgccttcctcttcgatccggagagaagagggctcctggactggaggacgaggttccagatcatcgaaggcgtggcgcgagggctcctgtacctccaccgcgactcgaggctccgcgtggtgcaccgcgacctcaaggccagcaacatcctcctcgaccgcgacatgaaccccaagatctccgacttcggcatggccaggatcttcggcggcgaccagaaccaggtcaacaccaaccgcgtcgtcggcacactgggctacatgtcaccggagtacgcgatggaggggctcttctcggtgaggtcggacgtgtacagcttcggcatcctcatcctggagatcatcacgggccagaagaacagcagcttccaccacatggagggctccctcaacatcgtcggctacgcgtggcagctgtggaacggggacagagggcaggagctgatcgacccggcgatccgggggacgtgccccgcgaaggaggcgctgcggtgcgtgcacatggcgctgctgtgcgtgcaggaccacgcgcacgaccgcccggacatcccctacgtggtgctcacgctcggcagcgactcctccgtgctgcccacgccgcgcccgccgacgttcacgctgcagtgcacgtcgtcgtcgtcggggcgggacatttcattgattggttga More
Protein seq		MASTAAIAALALVFFVLLCVRDGGGVDAAHTLSQGQSLGANDMLVSANGTFKVGFFTPAGGDPGKVYLGVMYATSNVQTVMWVANRDAPVRTAAGAASATVTGSGELLVKEGDRVAWRTNASAAGRSNHTLTIRDDGNLVISGSDAAGTDVEWESFHHPTDTFVPGMEIALRQTNGYRTLYTSWRSDADPATGDFTLGLDASAQLYIWRSQGGKNSTYWRSGQWASGNFVGIPWRALYVYGFKLNGDPPPIAGDMSIAFNPFNSSLYRFVLRPNGVETCYMLLGSGDWELVWSQPTIPCHRYNLCGDNAECTADDNEPICTCFTGFEPKSPQEYNNGNWTQGCVRSVPLTCSSERNNTTAGGAGAGGGDGFTVIRGVKLPDFAVWGSLVGDANSCEKACLGNCSCGAYSYSTGSCLTWGQELVDIFQFQTGTEGAKYDLYVKAFSYGSAGDELKELGIGRKKAQLPLLRPARDAKQDFSGPAQSEHEKSEEGKNCELPLFAFETLATATDNFSISNKLGEGGFGHVYKGRLPGGEEIAVKRLSRSSGQGLEEFKNEVILIAKLQHRNLVRLLGCCIQGEEKILVYEYMPNKSLDAFLFDPERRGLLDWRTRFQIIEGVARGLLYLHRDSRLRVVHRDLKASNILLDRDMNPKISDFGMARIFGGDQNQVNTNRVVGTLGYMSPEYAMEGLFSVRSDVYSFGILILEIITGQKNSSFHHMEGSLNIVGYAWQLWNGDRGQELIDPAIRGTCPAKEALRCVHMALLCVQDHAHDRPDIPYVVLTLGSDSSVLPTPRPPTFTLQCTSSSSGRDISLIG
Function		G-type lectin S-receptor-like serine/threonine-protein kinase B120 [UniProtKB/Swiss-Prot:O81906]

Transcripts

Gene	Transcript	Chromosome	Start	End	Strand	Source
OsGoSa_07g0018530	OsGoSa_07g0018530.01	Chr07	22381717	22387054	-	NAM
CDS seq	atggcttccacggccgccattgctgcgctcgcgttggtgttcttcgtgttgctgtgtgtgagagatggtggcggcgtcgacgcggcgcacacgctgtcgcaggggcagtcgctgggcgcgaacgacatgctggtgtcggcgaacggcacgttcaaggtggggttcttcacgccggcgggtggcgacccggggaaggtgtacctcggggtgatgtacgcgacgtcgaacgtgcagacggtgatgtgggtggcgaaccgcgacgcccccgtgagaacggcggcgggggccgcctccgccaccgtgacgggctccggcgagctgctggtgaaggagggcgaccgcgtcgcgtggcggacgaacgcgtcggccgcggggcgctccaaccacacgctgacgatccgcgacgacgggaacctcgtgatctccggcagcgacgccgccggcacggacgtagagtgggagagcttccaccacccgacggacaccttcgtcccgggcatggagatcgcgctccggcagaccaacggctaccgcacgctgtacacgtcgtggaggagcgacgccgacccggccaccggcgacttcacgctggggctggacgcgtcggcgcagctctacatctggcggagccagggcggcaagaactcaacctactggaggtcggggcagtgggcgagcggcaacttcgtcggcatcccgtggcgggcgctctacgtctacggcttcaagttgaacggcgacccgccgccgatcgccggcgacatgtccatcgcgttcaaccccttcaactcgtcgctctaccgcttcgtgcTCcggccgaacggcgtcgagacgtgctacatgctcctcggctccggcgactgggagctcgtctggtcgcagccgaccatcccctgccaccgctacaacttgtgcggcgacaacgccgagtgcaccgccgacgacaacgagcccatctgcacctgcttcacaggttttgagccaaaatctccgcaagagtacaacaacggcaactggacgcaggggTgcgtgaggagcgttccactgacgtgcagcagcgagaggaacaacacgaccgccggtggcgccggcgccggtggcggcgacgggttcaccgtcatccggggcgtgaagctgccggacttcgccgtgtggggatcgctgGtgggcgacgcgaactcgtgcgagaaggcgtgcctgggcaactgctcgtgcggggcgtacagctacagcaccggcagctgcctcacctgggggcaggagctggtggacatcttccagttccaaaccggcaccgagggagcgaaatacgacctctacgtcaaggccttctcatatggaagtgcaggagacgaattaaaggaacttggcattggtaggaaaaaggcacaactcccgttgctgcgtcctgcgagggatgcaaagcaggatttctcagggccagcgcaatctgaacacgagaaatcagaggagggcaagaactgcgagctgccgctgttcgcgttcgagaccttagcgacggccaccgacaacttcagcatctcgaacaagctcggagagggaggcttcggccatgtctacaagggaaggctccctggaggagaagagatcgcggtgaagaggctgtcccggagctccgggcaggggctggaggagttcaagaacgaggtgatcctgatcgcgaagctgcagcaccgcaatcttgtcaggttgctgggatgctgcatccagggcgaggagaagatcctggtgtacgaatacatgcccaacaagagcctcgacgccttcctcttcgatccggagagaagagggctcctggactggaggacgaggttccagatcatcgaaggcgtggcgcgagggctcctgtacctccaccgcgactcgaggctccgcgtggtgcaccgcgacctcaaggccagcaacatcctcctcgaccgcgacatgaaccccaagatctccgacttcggcatggccaggatcttcggcggcgaccagaaccaggtcaacaccaaccgcgtcgtcggcacactgggctacatgtcaccggagtacgcgatggaggggctcttctcggtgaggtcggacgtgtacagcttcggcatcctcatcctggagatcatcacgggccagaagaacagcagcttccaccacatggagggctccctcaacatcgtcggctacgcgtggcagctgtggaacggggacagagggcaggagctgatcgacccggcgatccgggggacgtgccccgcgaaggaggcgctgcggtgcgtgcacatggcgctgctgtgcgtgcaggaccacgcgcacgaccgcccggacatcccctacgtggtgctcacgctcggcagcgactcctccgtgctgcccacgccgcgcccgccgacgttcacgctgcagtgcacgtcgtcgtcgtcggggcgggacatttcattgattggttga More
Protein seq	MASTAAIAALALVFFVLLCVRDGGGVDAAHTLSQGQSLGANDMLVSANGTFKVGFFTPAGGDPGKVYLGVMYATSNVQTVMWVANRDAPVRTAAGAASATVTGSGELLVKEGDRVAWRTNASAAGRSNHTLTIRDDGNLVISGSDAAGTDVEWESFHHPTDTFVPGMEIALRQTNGYRTLYTSWRSDADPATGDFTLGLDASAQLYIWRSQGGKNSTYWRSGQWASGNFVGIPWRALYVYGFKLNGDPPPIAGDMSIAFNPFNSSLYRFVLRPNGVETCYMLLGSGDWELVWSQPTIPCHRYNLCGDNAECTADDNEPICTCFTGFEPKSPQEYNNGNWTQGCVRSVPLTCSSERNNTTAGGAGAGGGDGFTVIRGVKLPDFAVWGSLVGDANSCEKACLGNCSCGAYSYSTGSCLTWGQELVDIFQFQTGTEGAKYDLYVKAFSYGSAGDELKELGIGRKKAQLPLLRPARDAKQDFSGPAQSEHEKSEEGKNCELPLFAFETLATATDNFSISNKLGEGGFGHVYKGRLPGGEEIAVKRLSRSSGQGLEEFKNEVILIAKLQHRNLVRLLGCCIQGEEKILVYEYMPNKSLDAFLFDPERRGLLDWRTRFQIIEGVARGLLYLHRDSRLRVVHRDLKASNILLDRDMNPKISDFGMARIFGGDQNQVNTNRVVGTLGYMSPEYAMEGLFSVRSDVYSFGILILEIITGQKNSSFHHMEGSLNIVGYAWQLWNGDRGQELIDPAIRGTCPAKEALRCVHMALLCVQDHAHDRPDIPYVVLTLGSDSSVLPTPRPPTFTLQCTSSSSGRDISLIG More

Event Type

Chromosome

Start

End

Strand

Alternative mRNAs

Total mRNAs

Source

Expression

	Leaf	Root	Panicle
FPKM	0.000000	11.965624	None

Homologues

Genome & Annotation	Homologs	Type	Expression(FPKM)
Genome & Annotation	Homologs	Type	Leaf	Root	Panicle
Nipponbare \| IRGSP 1.0 \| Gramene(+IsoSeq)	OsNip_07g0550900	RBH	0.452427	0.684179	0.184399
Nipponbare \| IRGSP 1.0 \| MSU	LOC_Os07g36570	RBH	0.356755	0.459883	0.047438
Nipponbare \| IRGSP 1.0 \| RAP-db	Os07g0550900	RBH	None	None	None
Azucena \| AzucenaRS1 \| Gramene(+IsoSeq)	OsAzu_07g0018930	RBH	0.131370	0.0	0.0
KETAN NANGKA \| Os128077RS1 \| Gramene(+IsoSeq)	OsKeNa_07g0018860	RBH	0.0	0.0	0.0
CHAO MEO \| Os132278RS1 \| Gramene(+IsoSeq)	OsCMeo_07g0018800	RBH	0.0	1.595320	0.672224
ARC 10497 \| Os117425RS1 \| Gramene(+IsoSeq)	OsARC_07g0018700	RBH	0.0	0.018303	None
PR 106 \| Os127742RS1 \| Gramene(+IsoSeq)	OsPr106_07g0018750	RBH	0.000000	0.000000	0.989858
Minghui 63 \| MH63RS3 \| HZAU	OsMH63_07G0357400	RBH	0.161265	43.5942365	0.4224655
IR 64 \| OsIR64RS1 \| Gramene(+IsoSeq)	OsIR64_07g0019230	RBH	0.0	0.230788	0.000000
Zhenshan 97 \| ZS97RS3 \| HZAU	OsZS97_07G0369500	RBH	0.4821225	28.67797	0.2945725
LIMA \| Os127564RS1 \| Gramene(+IsoSeq)	OsLima_07g0018560	RBH	0.000000	0.134708	None
KHAO YAI GUANG \| Os127518RS1 \| Gramene(+IsoSeq)	OsKYG_07g0018660	RBH	0.000000	4.588417	None
GOBOL SAIL \| Os132424RS1 \| Gramene(+IsoSeq)	OsGoSa_07g0018500	RBH	0.000000	0.000000	None
LIU XU \| Os125827RS1 \| Gramene(+IsoSeq)	OsLiXu_07g0018830	RBH	0.076739	0.298161	0.0
LARHA MUGAD \| Os125619RS1 \| Gramene(+IsoSeq)	OsLaMu_07g0018660	RBH	0.0	0.529262	None
N22 \| OsN22RS2 \| Gramene(+IsoSeq)	OsN22_07G018510	RBH	0.0	0.735669	0.0
NATEL BORO \| Os127652RS1 \| Gramene(+IsoSeq)	OsNaBo_07g0018630	RBH	0.0	6.045707	0.000000

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National Key Laboratory of Crop Genetic Improvement

Huazhong Agricultural University

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