Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsGoSa_06g0004550 | OGI:06009190 | 16/16 | GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | Chr06:3058526-3065098 | ||||||||
| Gene Symbol | MADS5, OsMADS5, FDRMADS2 | ||||||||||
| DNA seq | aacaaaacatcttcattacatactgaattcagactaacatatagattatgttcttgcagcattcatcaatcaaaccgggatcattcctttgttcagttcaaaagagcataaacaaacgcactaaatttagcacacacacttaaggtaaaacccgcatgtaaaagagagcattacgtcaaacaccacatccaacataggagatgtccattaatgtgataagcaattcattcattggttgaggtgatccatgtaagcttgatacctgcatgggagagggaaatgacgacgaaattaacacatatatttaaaataaaaaaattggaccaatctaggaaggagtagattgattttgaattaaggagggggtgaggctcaaacccggaccggctagttcacagcttgcgttgctagccggaaagaccccGggcctttctccaacaaactccaacataaattaacacatatatttatgttaagtatctaacaaactccaactaaaaagaaaatgctttttaaagttctggacaaagttttagtacacatcatcgttcttcagtccctaacagtacgacgaactactttttttttatcttgccaaatttagttcattaaactctgagttaaacttgaagctagctagtactactaatttataatagtgccttgtctccttttgcccccacaatataggaagcgaaacatatgtagctcacattgaactttgattaattagtgaatattgatttagatagttggtcaataacaaattagatcataacttgtatgagctgaagtatacaaattaccctatatgcagggaagggtcacaaattgcatgatggagaaactcttggttagcttcactagcatggccactgggccctacatcttggcaaaatatatgaagcatattttctccactagtttcttgtatctgttgcaataaaaaagatttttatttaagctgaaagaactgcaattccctttttaagTAtatacacaagcaaccgaaatgattcagatcacttcaatatttaaccatgaatttaagaacattatacatccctttgccttgaaaatttaataatattatttggactagtatAttaatatcaaattaacagctatggggattcacagtaccactgaatttgagcaaggccattattaatttgattgcaccgtctatatttctttagataaataacgtgtaaccgagcagcaagggattattatattgctcatgtgagccttcagaacgacagcaatcggaagctagttcgagaaaagagtaattagtttcttaatttattagttggattttctacctcataaatacatttgatgtattaaataatacctctgtcacaaaatataataatttttagggctggatatgggtattaaggaagtaagaaaattaaatcggaaaatgttgataagataatttagatggagaagttgttatatttgaGgatggatggagtatatgctaagagaaatttattgttcattcttattgaagctacaaatagtttccctcaaaaaaaattatcacatcttttttctatgtGtttgtacatgtaggatatgactcgatcgtaggcacatggaaattatataacatactcatgctcaaggctagcagctccggagagagagtaatataattaacgtttggagttttatcacatatggagtatatatactaatctgtatatattaccttcctttttaagtctttattagcatcttgaagttgttgttcctgcaaaacttatcagttattatttctggggactagatagtagtcaaaagattaacgaaaacgtacccataaaacaaagacagcacacacatggattaccttacgtttgagctcaaatacttgatcaagcaactgttgattctgtaaaaatgTAtatacaaatgatttaccagcaaagtttgatcaagttaaaatttgatgtttcatgtaatacttgcgtaacaaaaccaaaaaaaaaaacagagcataggtaatatataacatataagatggtgtatatgatgtataaagtactgtgtcaagcgggaatcaagctaaatatgcgtcgaaattaatatgattcatttcactatgtaattacctttgatgacctgatattcatgagggatatctcgatctggttctcaagttgctcgagctccttcaagctaagtggaaccaagtcctcgccaagaagatttctgcataagatcagagttagtccatgtgtgtaacatgtagaaaagctttctgagaagatcccacgtgcatacctctgagttgtttgtaggaactcaactcttgtctttaactttaagtactcttggtaattgctctatatgaatgccaaattagcagccaaatattaattgaaagaaaatcatgattactatgtaaaagttgatgagttggaatatgcctggcatagaactaattaaattggacatgagaaattaattaattaattaatagacaaaacttaaaatggtaatggcatatcatgaagtatatacatactgcatattgctaattgttgtgttagttgacaacagaacttatttgttacttcctccgttttatattataagactttctaacattattcacattcatatagatgttaatgaatgtggacaatgctaaaaagtcttataatatgaaatggagggagtagatatgtagcatgcatgcatggataatacttgtttcgtcctcgatatatacatatatagctgctgttcaaaaggggaatataccctgcgcagaatgtactgtaaaaatgtaatttaaaagacaagtctgtttaaaatatacattaattaacctatcatgtctagcatattatacatctatcatgcacgaacatgagaattatgtaaaattttaagatatcacatacgttttattaaatattatgtctggcagtgtacacatcgatatttccttgtaaacaataattgtagcccctatcacaacgtataccagattgtgttaattacataacttatatccaaaacaagcctgattctcctttattaacagctagcagcagttgctgcacagatagagatgattcattagatctaaaaatatgcttggccacatagatcctcatgtttcaactaatgaccaaattaagttcaattctttgaaaaagtttaaggaaccatagtttattacaggtgaattgcatatgcagcaatcatattcagaatcagatggttactagttcagtttccagtgcagcagatgcttcacatgagttaaggttgtagttgcaactgcggtatcgctccagtgtcttgtacatactgttacAaaaaagaaaatcagtggaccacaaaactattttcaatgcagtatcagttaaagttgttatattatattttgttgtttaaatgcatgtatatacaacccgatttttctacatatgcatgatcagtttattttgcctttcataattaatggagcatatatcagttatattttctagggtatgtgcacagcgcaccctaagtttggagccagggttttaaatttcgaaagaaggatttctaccgcaggtgggcgatataaccaaaatttcagatttttttttcgtacgattttttttgaaattttgactgattttgaatggatttgaataaaatttgaccaaattcacaaaaatttgcaaacaaccgaaagtttcgggcgagatatgaacatttcggtgggggcgaaatttcgagccgaaatttcaaaccctgtttggagctataaacactatcacttacaaacatgtatatatttgattgatttgtgttaaattattagaaaattgtactctgtttttttagaaaaaaacaattgtaactaacattcagattttgtttcaaaataagtgcaattctaaaggagtgcagtactatttttccctacaaccacccccctcattcaaattatgatccctattttacccccaaccacAatttcactcccaatcattttacttcttgctaatttgtcttttaaatgctagagttacattattttctttgtggatactggatagaaggagtatattttttggggagggaaaaggagggagtacattgtgactaggagcttggaaaattcaaccaatccaaactcttggtacacaagtactcctactacataccctaacggtagggtagctagtaactgtgccttgtaaatcgacacaacctcgttccagactagctagcctgtactgtgcgctgacagaaaattttggcaatcgacacgcacgcctctcgcacgataagttgtttgcatacgatatgacaatgttcaaatgatcaaatcaatctattcgcatcatcgcatgtgaaattatgaatcgcataggagtatgaaattacgaatgcagtgaattaacttgggtgtgtgtccggccacgcctagctagaaatcaattcgatctttcgtaccacacaactacaactaggctgtgtttagttcacaccaaaattagggtccctttgaatcgcaggattgaaaaaacgtaggaataggaaaaacgtaggattttggtaggaatgtaagtgtaaaacagaggattgcaaaacgcaggaaaaacacatgaatgaccgtttgattgaaccgcaggaaaaacgcaggaattagatgagagagatagactcaaaagaaagttagcaagaggttgaagctcttgctaaatttcctccaaaatctctataggattgtccattccataggaatttcaaaggattggataggattcaatcctttgtttcaaagggcttcataggaaatttttctataggattgaaatcctctaaaattcctatgtttttccttcaattcaaaggggcctttagaagtttggttgaaattgaaacgatgtgacgtaaaagttaaaaatttatgtgtgtagaaaagttttgatgcgatgaaaaagttaaaagtttgatgaattattttggatctaaacacggaccgtgtacatatccacagggaggataacaaccgacgagacgatcgatacagagatgcttatctccacgagtactcctacgacttttcctcctgctgctgcattactacttttcctcttgcttctgcagctgcaatcgcatgcacactagtacagccgagacatttgacaagacgtagagagagaaacctagctagagagaaAGagagagagactcaatcgaacagtggaacccaagaacaacccctatgttgcgagttcccaatggaacagtaaaaccagagcaagaaaccctcccaacttgggacagatcacggagaaaagatgctcctaattaagatctgacaaaaataacttgccattggaaaaggcactgcagcctagtatatatgcttgtgcaatatgagaattaagatgcaatatgcgtactagtagtactatatgccatgttcttgtgcagatctggaggggtctcatctacttcactctgaaaattgcatgcactaatgaaagagctagagagacaagcatggaagagatcagcttagagatatctagcatgcagctctagcctacaaatggaagcaagcatggagagattgcatgcttgattctgttgacagagtactagtctctatggcaactgcaaaccgtaaagaggaattaggggacggcaaACacacacagatcggcagccatcaggtgactagaacggctgtcctgtctctctttctttaaccaaaacaacaacaggaacaggttagttaatcagctatgagcatgtatatgatcacgatcgaggtggtaaaaattaactaaaatcaggatctttgagaaAGattggtaaaaattccaacaaatacaaacgaaatgctggtatatatatgttttaaacacaaacaaagcagcagggaaaagactgggtgtaagaacttcccggacaaacatgagatgttaattaaacacacggactgatgattaattagaacatggtagctaggtgggcagtagctagcccagaaatcacaaggagcttcaaaaactcataacgagaaaactagtctttcttggctgcaaactaattaactaactttgcattagaattagggcgagatatatatgaattctctgcaaggggcgagagcttgcaagagagaattattagtagtaccaggaggaggtggagaactcgaagaggcggccgcgggtggagaagatgatgagggcgacctcggcgtcgcagagcacggacagctcgtacgccttcttcagcagcccgttcctcctcttcgcgaacgtcacctgccggcttatcttgttctcgatccgcttcagctctaccttccctcgccccatcgatctctctctagctctctctcggtctcaaaatctcttcttgatctatctcctctctctccttgcctagctagttagctgcagcctgcaagcttccctctctctccctctcccttgcagtcttgctccgtttgttggggatggatggatcatggatgtagtagctaagtagctcggctagctagccatgctcTCGTACCATTcggct
More
|
||||||||||
| CDS seq | atggggcgagggaaggtagagctgaagcggatcgagaacaagataagccggcaggtgacgttcgcgaagaggaggaacgggctgctgaagaaggcgtacgagctgtccgtgctctgcgacgccgaggtcgccctcatcatcttctccacccgcggccgcctcttcgagttctccacctcctcctgtatgtacaagacactggagcgataccgcagttgcaactacaaccttaactcatgtgaagcatctgctgcactggaaactgaactaagcaattaccaagagtacttaaagttaaagacaagagttgagttcctacaaacaactcagagaaatcttcttggcgaggacttggttccacttagcttgaaggagctcgagcaacttgagaaccagatcgagatatccctcatgaatatcaggtcatcaaagaatcaacagttgcttgatcaagtatttgagctcaaacgtaaggaacaacaacttcaagatgctaataaagacttaaaaaggaagatacaagaaactagtggagaaaatatgcttcatatattttgccaagatgtagggcccagtggccatgctagtgaagctaaccaagagtttctccatcatgcaatttgtgacccttccctgcatatagggtaa
More
|
||||||||||
| Protein seq | MGRGKVELKRIENKISRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSTRGRLFEFSTSSCMYKTLERYRSCNYNLNSCEASAALETELSNYQEYLKLKTRVEFLQTTQRNLLGEDLVPLSLKELEQLENQIEISLMNIRSSKNQQLLDQVFELKRKEQQLQDANKDLKRKIQETSGENMLHIFCQDVGPSGHASEANQEFLHHAICDPSLHIG |
||||||||||
| Function | MADS-box transcription factor 5 [UniProtKB/Swiss-Prot:Q0DEB8] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsGoSa_06g0004550 | OsGoSa_06g0004550.01 | Chr06 | 3058526 | 3065098 | - | NAM | ||
| CDS seq | atggggcgagggaaggtagagctgaagcggatcgagaacaagataagccggcaggtgacgttcgcgaagaggaggaacgggctgctgaagaaggcgtacgagctgtccgtgctctgcgacgccgaggtcgccctcatcatcttctccacccgcggccgcctcttcgagttctccacctcctcctgtatgtacaagacactggagcgataccgcagttgcaactacaaccttaactcatgtgaagcatctgctgcactggaaactgaactaagcaattaccaagagtacttaaagttaaagacaagagttgagttcctacaaacaactcagagaaatcttcttggcgaggacttggttccacttagcttgaaggagctcgagcaacttgagaaccagatcgagatatccctcatgaatatcaggtcatcaaagaatcaacagttgcttgatcaagtatttgagctcaaacgtaaggaacaacaacttcaagatgctaataaagacttaaaaaggaagatacaagaaactagtggagaaaatatgcttcatatattttgccaagatgtagggcccagtggccatgctagtgaagctaaccaagagtttctccatcatgcaatttgtgacccttccctgcatatagggtaa
More
|
|||||||
| Protein seq | MGRGKVELKRIENKISRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSTRGRLFEFSTSSCMYKTLERYRSCNYNLNSCEASAALETELSNYQEYLKLKTRVEFLQTTQRNLLGEDLVPLSLKELEQLENQIEISLMNIRSSKNQQLLDQVFELKRKEQQLQDANKDLKRKIQETSGENMLHIFCQDVGPSGHASEANQEFLHHAICDPSLHIG
More
|
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_06g0162800 | RBH | 0.0 | 0.0 | 7.156529 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os06g06750 | RBH | 0.0 | 0.0 | 1.682764 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os06g0162800 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_06g0004640 | RBH | 0.0 | 0.0 | 4.429272 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_06g0004550 | RBH | 0.0 | 0.0 | 4.875998 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_06g0004490 | RBH | 0.0 | 0.0 | 13.768509 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_06g0004610 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_06g0004510 | RBH | 0.0 | 0.0 | 18.836475 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_06G0054400 | RBH | 0.0108415 | 0.41802 | 80.125061 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_06g0004400 | RBH | 0.0 | 0.0 | 0.801326 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_06G0054700 | RBH | 0.0258085 | 1.1911735 | 54.7996065 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_06g0004640 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_06g0004500 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_06g0004530 | RBH | 0.0 | 0.0 | 0.790815 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_06g0004400 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_06G004310 | RBH | 0.0 | 0.0 | 6.385503 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_06g0004560 | RBH | 0.0 | 0.0 | 7.954600 |
