Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsGoSa_06g0001620 | OGI:06003780 | 16/16 | GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | Chr06:1187800-1189566 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | atggctgcgcgccgctgggcttggggacctccagcccgcgccttctccaccatcaccgcgaaggccaccgtgccgctcgcccacctggccgaactccccacgtcgctcccgacctcccgctacaccgtcaccccgcccgtccagccatggccgcgccgcctcaccgcgcgcagcctcgcgcgcctcctgctccgcctcccgacgccgcacctcgccgtgctcgccttccgccacgcgctcttccacgccgccccgccgcttcccccctcgctccccgtcttcgccgccgtcctctcccgcctccccgccgccgaccccgccctcctcccccccgtcctctccgccctccgcgccgccaacctccccgccttctccgaccgccccttccttcccctgctccgctcgctcccgcccctcccttccctccgcctcttcctctccctcccctccttcaactcccacccctccgtccgctccttcaacgccctcctccactctctcgtctccgcccgccgcctccgtctcgccgccgcgctcttccgcgccgcgcccaccaagctctacatcacacccaacctcgtctcctgcaacatcctgctcaaggggcttgttggcatcggtgacctcgatgccgcactcaaggtactcgacgaaatgcctggcctgggaatcaccccggatgtcgtcacctacaccacggttctctctgcctactgtgggaagggggatattgaaggtgctcagaagctcttcgatgatataatcgctagtggacgtagaccagatgttacgatgtacaccgtgctcatcgacggttactgccagtgcgggaacctccaggatgcagccagaattatggatgagatggaggctgctagagtgcaaccaaatgaggtcacatattccgtggtgatagaagcatgctgcaaggaggaaaaacctattgaggcacgcgattttatgcgagagatgctgggggcaggatatgtgccagacacagcgctaggtgctaaggtggttgatgtgctatgccaggatggaaaatcagaggaggcgtatcaattgtggagatggatggagaagaagaacgtgccacctgataacatggtcacaagcacattgatctattggttgtgcaagaatggaatggtccgagaggcgaggaacctgtttgatgagcttgagaggggtttcaaaccaagcttgctgacgtacaactcacttatttcaggattatgtgaaaatgaagagctacaggaggctgggcgggtgtgggatgacatggttgaacgagggtatgaaccaaatgccatgacttatgaggccttgatcaagggattatgcaaaacagggaagccaaatgaaggggctacagtctttgaggaaatggtgtctagaggttgcaagccaagcagccttcttttccaagttttggttgatagtctttcggagccaagacatgaggataccattagaaaaattcttgaaactgcagctttatatggtcggtatttcctggatggtgattcttgggaaatttttgtcaggaaggtggtaaatgcaactgatacttcgaacaagcatctcgatttagtattagatatgtgatcatgtggtgctgagaaatgtaatcatcaaattcaatagcagtgtccttctacagagatatcaggatattgtggttctctgggcttgctattcctgggatgtgcagattggtatagggatacactggataaatcaaagaatgtgagctatattgacacc
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| CDS seq | atggctgcgcgccgctgggcttggggacctccagcccgcgccttctccaccatcaccgcgaaggccaccgtgccgctcgcccacctggccgaactccccacgtcgctcccgacctcccgctacaccgtcaccccgcccgtccagccatggccgcgccgcctcaccgcgcgcagcctcgcgcgcctcctgctccgcctcccgacgccgcacctcgccgtgctcgccttccgccacgcgctcttccacgccgccccgccgcttcccccctcgctccccgtcttcgccgccgtcctctcccgcctccccgccgccgaccccgccctcctcccccccgtcctctccgccctccgcgccgccaacctccccgccttctccgaccgccccttccttcccctgctccgctcgctcccgcccctcccttccctccgcctcttcctctccctcccctccttcaactcccacccctccgtccgctccttcaacgccctcctccactctctcgtctccgcccgccgcctccgtctcgccgccgcgctcttccgcgccgcgcccaccaagctctacatcacacccaacctcgtctcctgcaacatcctgctcaaggggcttgttggcatcggtgacctcgatgccgcactcaaggtactcgacgaaatgcctggcctgggaatcaccccggatgtcgtcacctacaccacggttctctctgcctactgtgggaagggggatattgaaggtgctcagaagctcttcgatgatataatcgctagtggacgtagaccagatgttacgatgtacaccgtgctcatcgacggttactgccagtgcgggaacctccaggatgcagccagaattatggatgagatggaggctgctagagtgcaaccaaatgaggtcacatattccgtggtgatagaagcatgctgcaaggaggaaaaacctattgaggcacgcgattttatgcgagagatgctgggggcaggatatgtgccagacacagcgctaggtgctaaggtggttgatgtgctatgccaggatggaaaatcagaggaggcgtatcaattgtggagatggatggagaagaagaacgtgccacctgataacatggtcacaagcacattgatctattggttgtgcaagaatggaatggtccgagaggcgaggaacctgtttgatgagcttgagaggggtttcaaaccaagcttgctgacgtacaactcacttatttcaggattatgtgaaaatgaagagctacaggaggctgggcgggtgtgggatgacatggttgaacgagggtatgaaccaaatgccatgacttatgaggccttgatcaagggattatgcaaaacagggaagccaaatgaaggggctacagtctttgaggaaatggtgtctagaggttgcaagccaagcagccttcttttccaagttttggttgatagtctttcggagccaagacatgaggataccattagaaaaattcttgaaactgcagctttatatggtcggtatttcctggatggtgattcttgggaaatttttgtcaggaaggtggtaaatgcaactgatacttcgaacaagcatctcgatttagtattagatatgtga
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| Protein seq | MAARRWAWGPPARAFSTITAKATVPLAHLAELPTSLPTSRYTVTPPVQPWPRRLTARSLARLLLRLPTPHLAVLAFRHALFHAAPPLPPSLPVFAAVLSRLPAADPALLPPVLSALRAANLPAFSDRPFLPLLRSLPPLPSLRLFLSLPSFNSHPSVRSFNALLHSLVSARRLRLAAALFRAAPTKLYITPNLVSCNILLKGLVGIGDLDAALKVLDEMPGLGITPDVVTYTTVLSAYCGKGDIEGAQKLFDDIIASGRRPDVTMYTVLIDGYCQCGNLQDAARIMDEMEAARVQPNEVTYSVVIEACCKEEKPIEARDFMREMLGAGYVPDTALGAKVVDVLCQDGKSEEAYQLWRWMEKKNVPPDNMVTSTLIYWLCKNGMVREARNLFDELERGFKPSLLTYNSLISGLCENEELQEAGRVWDDMVERGYEPNAMTYEALIKGLCKTGKPNEGATVFEEMVSRGCKPSSLLFQVLVDSLSEPRHEDTIRKILETAALYGRYFLDGDSWEIFVRKVVNATDTSNKHLDLVLDM |
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| Function | Pentatricopeptide repeat-containing protein At5g16420, mitochondrial [UniProtKB/Swiss-Prot:Q9FFE3] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsGoSa_06g0001620 | OsGoSa_06g0001620.01 | Chr06 | 1187800 | 1189566 | + | NAM | ||
| CDS seq | atggctgcgcgccgctgggcttggggacctccagcccgcgccttctccaccatcaccgcgaaggccaccgtgccgctcgcccacctggccgaactccccacgtcgctcccgacctcccgctacaccgtcaccccgcccgtccagccatggccgcgccgcctcaccgcgcgcagcctcgcgcgcctcctgctccgcctcccgacgccgcacctcgccgtgctcgccttccgccacgcgctcttccacgccgccccgccgcttcccccctcgctccccgtcttcgccgccgtcctctcccgcctccccgccgccgaccccgccctcctcccccccgtcctctccgccctccgcgccgccaacctccccgccttctccgaccgccccttccttcccctgctccgctcgctcccgcccctcccttccctccgcctcttcctctccctcccctccttcaactcccacccctccgtccgctccttcaacgccctcctccactctctcgtctccgcccgccgcctccgtctcgccgccgcgctcttccgcgccgcgcccaccaagctctacatcacacccaacctcgtctcctgcaacatcctgctcaaggggcttgttggcatcggtgacctcgatgccgcactcaaggtactcgacgaaatgcctggcctgggaatcaccccggatgtcgtcacctacaccacggttctctctgcctactgtgggaagggggatattgaaggtgctcagaagctcttcgatgatataatcgctagtggacgtagaccagatgttacgatgtacaccgtgctcatcgacggttactgccagtgcgggaacctccaggatgcagccagaattatggatgagatggaggctgctagagtgcaaccaaatgaggtcacatattccgtggtgatagaagcatgctgcaaggaggaaaaacctattgaggcacgcgattttatgcgagagatgctgggggcaggatatgtgccagacacagcgctaggtgctaaggtggttgatgtgctatgccaggatggaaaatcagaggaggcgtatcaattgtggagatggatggagaagaagaacgtgccacctgataacatggtcacaagcacattgatctattggttgtgcaagaatggaatggtccgagaggcgaggaacctgtttgatgagcttgagaggggtttcaaaccaagcttgctgacgtacaactcacttatttcaggattatgtgaaaatgaagagctacaggaggctgggcgggtgtgggatgacatggttgaacgagggtatgaaccaaatgccatgacttatgaggccttgatcaagggattatgcaaaacagggaagccaaatgaaggggctacagtctttgaggaaatggtgtctagaggttgcaagccaagcagccttcttttccaagttttggttgatagtctttcggagccaagacatgaggataccattagaaaaattcttgaaactgcagctttatatggtcggtatttcctggatggtgattcttgggaaatttttgtcaggaaggtggtaaatgcaactgatacttcgaacaagcatctcgatttagtattagatatgtga
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| Protein seq | MAARRWAWGPPARAFSTITAKATVPLAHLAELPTSLPTSRYTVTPPVQPWPRRLTARSLARLLLRLPTPHLAVLAFRHALFHAAPPLPPSLPVFAAVLSRLPAADPALLPPVLSALRAANLPAFSDRPFLPLLRSLPPLPSLRLFLSLPSFNSHPSVRSFNALLHSLVSARRLRLAAALFRAAPTKLYITPNLVSCNILLKGLVGIGDLDAALKVLDEMPGLGITPDVVTYTTVLSAYCGKGDIEGAQKLFDDIIASGRRPDVTMYTVLIDGYCQCGNLQDAARIMDEMEAARVQPNEVTYSVVIEACCKEEKPIEARDFMREMLGAGYVPDTALGAKVVDVLCQDGKSEEAYQLWRWMEKKNVPPDNMVTSTLIYWLCKNGMVREARNLFDELERGFKPSLLTYNSLISGLCENEELQEAGRVWDDMVERGYEPNAMTYEALIKGLCKTGKPNEGATVFEEMVSRGCKPSSLLFQVLVDSLSEPRHEDTIRKILETAALYGRYFLDGDSWEIFVRKVVNATDTSNKHLDLVLDM
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_06g0125300 | RBH | 0.656702 | 0.362883 | 0.429545 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os06g03530 | RBH | 0.321107 | 0.178050 | 0.051972 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os06g0125300 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_06g0001790 | RBH | 0.106445 | 0.0 | 1.076752 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_06g0001720 | RBH | 0.072702 | 0.608605 | 0.900983 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_06g0001660 | RBH | 0.584011 | 0.0 | 0.638977 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_06g0001660 | RBH | 0.0 | 0.100147 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_06g0001670 | RBH | 2.400020 | 3.170891 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_06G0021500 | RBH | 1.0252275 | 3.5230615 | 0.6618625 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_06g0001660 | RBH | 0.095756 | 0.000000 | 0.328174 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_06G0022200 | RBH | 2.0966905 | 4.571895 | 2.6831885 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_06g0001750 | RBH | 0.000000 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_06g0001640 | RBH | 0.150054 | 3.413733 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_06g0001650 | RBH | 0.327695 | 0.111671 | 0.138264 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_06g0001490 | RBH | 0.330180 | 1.245885 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_06G001590 | RBH | 0.044365 | 0.0 | 0.301225 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_06g0001720 | RBH | 0.671503 | 2.237152 | 0.444207 |
