Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsGoSa_05g0024730 | OGI:05072030 | 16/16 | GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | Chr05:27492845-27498968 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | gttcaaatgcaactgatttcatgtataatctccacgttccaaacaagtcattgatgttaacgaagtactgcctagtggatggacaaaaaaaagcgcgagcaaagtttggacactagcaaacaggcaaccattattcagaacacatttcacaaccatttcctgcctttttattatgctctcggggttaatgaaacacatgattgcccagacggggcaaattattcagaataacacgctacaagctaatctagccttgacatagtatttatgtagcggaaggtagtgcccagttcttaggcaaggggccaatgtcatatatgatctccctgtggcaagaccaaacgagtttaatggcttctggagttccgatccctgcacctcttggatcaccagcaggcccaaacctgaattacaaataataaaatgacatgttaacctattttggttataaaaggaagatggcaggttccagtttctagtcttagctcaccagtggttctgtggagcaccagttgtccttgctcggatgccggcatatgttgtcccgttaactgatcgcccaagtacttcctgaaaaccgatgagtgtgtgttggataagtcactgagccgattggattcaagtgttcaattgttggtggcaaaagctgcgtgagtattgctacaagatggcttgacaaatgttagcctaactagcttggtggtaccgtggtagaattattcaaccaagtgaatgggcatgggtgcaacacacaacagagatgaaaaccaacttacctgcaggaataaagggtcgtttgaaacaactgcagccgtcagatgagcgttcatcctttcacaggcttctaatactaattcaagctcatcatcagaatactctgtaaccacctgcgcatatgaacttggaataggttagtactatatcacaatgacaattgaaacttgtaggttgttatcaattctattgaaagctagcatgcatatgcacaaaatcactgattaactacaagtagaccataccatattaaagaaaagtactcctattctttaaccatgcagtaggttaacaaaattcatgtcatagctatgccaggttaccgttaaataaaaaattgtatctaatcgtggcaagacaatgcatcaagaatctcttacctggaaaggaccaaagatctcccttgtcacaagctcaaaattgccacttttaaggatttccgatagaggaacaaatacagcagttggtttgaaggcaccatatatttctgggatagaatggttctccagaggttcaccaccaaacaggacctttgatcctggtattttgagaaggtttttcatgtgctctatcatgcttgatgttgtaacctggacggcataggaaaaatagatttaacttcatggagaaaccataatgatggtcatctagttatgcaaccacatgaacaaattaacaagcaaaaatgagtgttgaatggctccatgtccattttctctatatatgttttgcaaggatcagttccagtcagttcttctagacactttgatatttggacctagtagccactagcagggattcaggaacatatatagttgcccatccctattttgtttttcaacaacttttgaaccacaaaatgttcaaatactaacaaaaaatagtattaatacatgaaaatggctagtgattagagttgatcactcacagtaaggactgggccaatggtcaagtcttcaagcttccttctttcagaaagacttttcattttatcaagaagcccactagacgaccaattctgcaagttaagaaaattaaacaacagattaagatatgaaaagtaacacaagctcaactagcttccaaagctcaaattaaaaagaaggacaaattgtattttccttttctcaggagcactggacctattgtcttgaaatcagtaggatcgatattataagacagtcggtcttaaacctagtgttgatcattggataagttactactgtagtcataaataaccttgtccataagtaaatggctcaaaccatcaagataaaaaagaagcatgtaacataagttatatgtcaagagtcatgatcacagtcaaagactcaagcaaagaaggaacataatactaatcttcactattaccttgtgcatgaatagaatagactgagcagagcacttctgaccactgcaagcataagcatcctggtcgcaaacccatgcaatgtaatcaacctgtttgggtatggaaaagtatgtcaggtcagctcggtagctacgcactgaattttttatatacaatacgaagaactgaacagaaatgacttcagacctcttgaacatctggaccaagaattttccagtcaaaaccagcatcttccaatttgattttgcctttcaaatcagcagccaatttctctgctatccgtgagctcccagtgaagagggtcattttcggatttgcctaaaagagatcatgtgaaaatcaaattcagcatgaaatctgtgctgctagtaggacagaagtgtacttttggcactgcatataaaactatcagatgcattttagttgtgaattaaatccttaacaatccattggaaatgatgtatcaccccaacaaaggaaagatcagatgaattgcagcacactggtccggtggtcctatattaacatgatgagcagcatataatgttacaatatggaactcagttgatcagatattgagaaatgtaggtatttcaatccagtaattacaaagtattgacatggtcaaatgcattattcaaaagcaattatcaaggggaaactgtaaaactctcatcttctaaaaggtggtgttagtgataatgtgtgctaatttgttatgctatctgatacagcatgtaatctctttactttacagtgagtgagagggtagctattcaaacctctaacagcagcttgttcatcgtgataccatcagaatttatgaagtccacatcctctgctggcatcccacatgcgtgaagcaacctaagcatctggtccatcacaatgctaactttgctgtcaactttgaggacaggtttatttcccatatacagtgctcccattagttgcagtaatggaatctccaatgggaaattgaatggtgtgataattgcaacctgttcagaattatatatataacattagagctaacatgatacccAaaaaaaacctggtattgcctaaataaatggctaaacattcaactacattgttagagtactcaccggaccatatggccaacggtaaccattactgctttgtccaagatggttgccaggtacagcaaatgatcgagccagaaagcgtacctaccataccagagaaatagttgatgtgaatgatgagaatatatcggagaagttttttcaatctgcagaatgcagcattttgcaagttccttggaaatgatgtgttctttcaacaaattacaagtctaccactacaaactgcagcgctaatgaaagtatcaattatatcatagtacttgtgaacatgtcaatgaaggaactgatctgatatgtagattacactgatactatgaaatggtcctctctttttttatacctgatctccacaaaagttctccaagaatttttgagagacttgaacttctgcaagagcttgctgatagctctttggagataccctctggataagtttagcaaagaaatctgaaacctgtcaatcaccaatgacacaatcagaaactaaaagcaatagatagaaaagcatatcctttattctctccttctcaacatgacctaatttggcatttataggagtgtcataatgcaggccaatggatgcacagctagagtcatctaaaatctcactgaaagtaataggaagtcaaaccatttaattttaagataacataccacaggttgaccaagcatgtttgcagctttggcagatatatctccatacatgagatacctgcatattaaagataccgaagttcgtcaaagcatacatgagcattgttgttaactgccactgtcagtgtcagttatacagtacaagtttaaatatagtacacagttttttatcgtattgaatttttcctactccacaaagtttgtttactgtgtgtaaagcatgttgttatcagcaatatatttttgggaaaattgataatttgtcactccttagagtggtacatcattttccaactccatgtgaccctaggatcacatgtgatagacacacaggggggtaaatcatccatttgataccaaatcccctatgtgtatagcttggcttttcgggggagttggggtcaactgtgcaagaacaaggatactgtagctaactattcatgtagtatagcacaaatacttcattgaccaggagtttgataaagctgcaaaaatttatcaatgagaaagaagagccagtaagtggattagctatcaggtaaaataaactctgttgtgttagatgccttttgtaatgcatccaaagttggggttcaaacacaacaGacagccaaaagaaaaaagtcaaacattggaaaaccatgcaatgcattagtagtacaagaaaactacacagacctctctggagctttaagtgggttgtgaagtccatgctttgggcaattagataaactctctacaaatggctgcaccggAaaaaaaaaatgcacgttgcctgaggatacacttcagagcagataacagattcacagtaatatcaactaagtctaaatataaccgaagtcagtcattttaatgtaagagagtttgtttctttaacggatcaatctgtgggtttttttagtggagtaagctgaggaaggttaataacaattaatatcactgcaacacggaaataataaaagaaacatctgaaagtaactaacgtacctttatttctgcttcctgaacctcagcaactttgataaatttttcaccatttaaaggatcaactagccaattccagttaccagatgttgtccaactgccctgcactgaacttaaccctatcagcagtctgatcagaactttatttatcaagcatctctacgtccatgccaaaataacttctttcttccatataggtgaaaggctacatgacagtgacatgtttgactgggacaaccattcggaaataaactacaccttaactcttattagctcagtagaagttagaactgaatgtttatgaagcaaagagatcaagcacatgtcattgctttgaaaaatcaacagtaatgtgcggcaaaactgcataagcagtcataacataacctgtggaaagtatgagaattaccaaacacgtatttcctcttcaaaatataataggcatggcattttattgttcaaataagacacaatgtcaaactcttctcaagtaaaattacttcccaccataaccatatgaactagtttgtgcactgccacagcattcctatgaattggttttgcaacatcacaagcactaactaataatatccctccagattcaatgtgtacaaaaacaataagcagaaccccaaatgggagctctcttaccaaaattctgcacttccgccgggctcgaacctgaaatttcctgaggagacaccgtcgcgaatggcggcgtgtgcaaccacctaccaatcaatcacccaaacgatgagtcgaccatattcatcgcccgcaaccaaaaccacgatgccggatcgctcccaaaaaaaacggtggaaaaagcgagcgccgcaacgagcggctcgaccggaaactcgcatcagatcacccaaacgccaacggcgcccaaaccgccgcagcacgatccacgcacgcacgcacgcacgcacgcccattcccgacaaccctccacgcgagcagatcaggggaGggggtttcagacagatcacctggaggcgagcgcggcggggcctgaccgccggacggcggcggcgaggcgccgccgggaaaggatgaggctcatggctctcgatcggcgagctcgggccgcgcgcggcgcggcgacccggcggtggagcggagcggagtggtgtcctcgcctcgctctcttccttccacggtacggtctcgtgtcgcgactcgctgcgtgcgtgtgcagtgccagcggcagcgtgggtgtcct
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| CDS seq | atgagcctcatcctttcccggcggcgcctcgccgccgccgtccggcggtcaggccccgccgcgctcgcctccaggtggttgcacacgccgccattcgcgacggtgtctcctcaggaaatttcaggttcgagcccggcggaagtgcagaattttgtgcagggcagttggacaacatctggtaactggaattggctagttgatcctttaaatggtgaaaaatttatcaaagttgctgaggttcaggaagcagaaataaagccatttgtagagagtttatctaattgcccaaagcatggacttcacaacccacttaaagctccagagaggtatctcatgtatggagatatatctgccaaagctgcaaacatgcttggtcaacctgtggtttcagatttctttgctaaacttatccagagggtatctccaaagagctatcagcaagctcttgcagaagttcaagtctctcaaaaattcttggagaacttttgtggagatcaggtacgctttctggctcgatcatttgctgtacctggcaaccatcttggacaaagcagtaatggttaccgttggccatatggtccggttgcaattatcacaccattcaatttcccattggagattccattactgcaactaatgggagcactgtatatgggaaataaacctgtcctcaaagttgacagcaaagttagcattgtgatggaccagatgcttaggttgcttcacgcatgtgggatgccagcagaggatgtggacttcataaattctgatggtatcacgatgaacaagctgctgttagaggcaaatccgaaaatgaccctcttcactgggagctcacggatagcagagaaattggctgctgatttgaaaggcaaaatcaaattggaagatgctggttttgactggaaaattcttggtccagatgttcaagaggttgattacattgcatgggtttgcgaccaggatgcttatgcttgcagtggtcagaagtgctctgctcagtctattctattcatgcacaagaattggtcgtctagtgggcttcttgataaaatgaaaagtctttctgaaagaaggaagcttgaagacttgaccattggcccagtccttactgttacaacatcaagcatgatagagcacatgaaaaaccttctcaaaataccaggatcaaaggtcctgtttggtggtgaacctctggagaaccattctatcccagaaatatatggtgccttcaaaccaactgctgtatttgttcctctatcggaaatccttaaaagtggcaattttgagcttgtgacaagggagatctttggtcctttccaggtggttacagagtattctgatgatgagcttgaattagtattagaagcctgtgaaaggatgaacgctcatctgacggctgcagttgtttcaaacgaccctttattcctgcaggaagtacttgggcgatcagttaacgggacaacatatgccggcatccgagcaaggacaactggtgctccacagaaccactggtttgggcctgctggtgatccaagaggtgcagggatcggaactccagaagccattaaactcgtttggtcttgccacagggagatcatatatgacattggccccttgcctaagaactgggcactaccttccgctacataa
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| Protein seq | MSLILSRRRLAAAVRRSGPAALASRWLHTPPFATVSPQEISGSSPAEVQNFVQGSWTTSGNWNWLVDPLNGEKFIKVAEVQEAEIKPFVESLSNCPKHGLHNPLKAPERYLMYGDISAKAANMLGQPVVSDFFAKLIQRVSPKSYQQALAEVQVSQKFLENFCGDQVRFLARSFAVPGNHLGQSSNGYRWPYGPVAIITPFNFPLEIPLLQLMGALYMGNKPVLKVDSKVSIVMDQMLRLLHACGMPAEDVDFINSDGITMNKLLLEANPKMTLFTGSSRIAEKLAADLKGKIKLEDAGFDWKILGPDVQEVDYIAWVCDQDAYACSGQKCSAQSILFMHKNWSSSGLLDKMKSLSERRKLEDLTIGPVLTVTTSSMIEHMKNLLKIPGSKVLFGGEPLENHSIPEIYGAFKPTAVFVPLSEILKSGNFELVTREIFGPFQVVTEYSDDELELVLEACERMNAHLTAAVVSNDPLFLQEVLGRSVNGTTYAGIRARTTGAPQNHWFGPAGDPRGAGIGTPEAIKLVWSCHREIIYDIGPLPKNWALPSAT |
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| Function | Probable aldehyde dehydrogenase [UniProtKB/Swiss-Prot:Q40255] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsGoSa_05g0024730 | OsGoSa_05g0024730.01 | Chr05 | 27492845 | 27498968 | - | NAM | ||
| CDS seq | atgagcctcatcctttcccggcggcgcctcgccgccgccgtccggcggtcaggccccgccgcgctcgcctccaggtggttgcacacgccgccattcgcgacggtgtctcctcaggaaatttcaggttcgagcccggcggaagtgcagaattttgtgcagggcagttggacaacatctggtaactggaattggctagttgatcctttaaatggtgaaaaatttatcaaagttgctgaggttcaggaagcagaaataaagccatttgtagagagtttatctaattgcccaaagcatggacttcacaacccacttaaagctccagagaggtatctcatgtatggagatatatctgccaaagctgcaaacatgcttggtcaacctgtggtttcagatttctttgctaaacttatccagagggtatctccaaagagctatcagcaagctcttgcagaagttcaagtctctcaaaaattcttggagaacttttgtggagatcaggtacgctttctggctcgatcatttgctgtacctggcaaccatcttggacaaagcagtaatggttaccgttggccatatggtccggttgcaattatcacaccattcaatttcccattggagattccattactgcaactaatgggagcactgtatatgggaaataaacctgtcctcaaagttgacagcaaagttagcattgtgatggaccagatgcttaggttgcttcacgcatgtgggatgccagcagaggatgtggacttcataaattctgatggtatcacgatgaacaagctgctgttagaggcaaatccgaaaatgaccctcttcactgggagctcacggatagcagagaaattggctgctgatttgaaaggcaaaatcaaattggaagatgctggttttgactggaaaattcttggtccagatgttcaagaggttgattacattgcatgggtttgcgaccaggatgcttatgcttgcagtggtcagaagtgctctgctcagtctattctattcatgcacaagaattggtcgtctagtgggcttcttgataaaatgaaaagtctttctgaaagaaggaagcttgaagacttgaccattggcccagtccttactgttacaacatcaagcatgatagagcacatgaaaaaccttctcaaaataccaggatcaaaggtcctgtttggtggtgaacctctggagaaccattctatcccagaaatatatggtgccttcaaaccaactgctgtatttgttcctctatcggaaatccttaaaagtggcaattttgagcttgtgacaagggagatctttggtcctttccaggtggttacagagtattctgatgatgagcttgaattagtattagaagcctgtgaaaggatgaacgctcatctgacggctgcagttgtttcaaacgaccctttattcctgcaggaagtacttgggcgatcagttaacgggacaacatatgccggcatccgagcaaggacaactggtgctccacagaaccactggtttgggcctgctggtgatccaagaggtgcagggatcggaactccagaagccattaaactcgtttggtcttgccacagggagatcatatatgacattggccccttgcctaagaactgggcactaccttccgctacataa
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| Protein seq | MSLILSRRRLAAAVRRSGPAALASRWLHTPPFATVSPQEISGSSPAEVQNFVQGSWTTSGNWNWLVDPLNGEKFIKVAEVQEAEIKPFVESLSNCPKHGLHNPLKAPERYLMYGDISAKAANMLGQPVVSDFFAKLIQRVSPKSYQQALAEVQVSQKFLENFCGDQVRFLARSFAVPGNHLGQSSNGYRWPYGPVAIITPFNFPLEIPLLQLMGALYMGNKPVLKVDSKVSIVMDQMLRLLHACGMPAEDVDFINSDGITMNKLLLEANPKMTLFTGSSRIAEKLAADLKGKIKLEDAGFDWKILGPDVQEVDYIAWVCDQDAYACSGQKCSAQSILFMHKNWSSSGLLDKMKSLSERRKLEDLTIGPVLTVTTSSMIEHMKNLLKIPGSKVLFGGEPLENHSIPEIYGAFKPTAVFVPLSEILKSGNFELVTREIFGPFQVVTEYSDDELELVLEACERMNAHLTAAVVSNDPLFLQEVLGRSVNGTTYAGIRARTTGAPQNHWFGPAGDPRGAGIGTPEAIKLVWSCHREIIYDIGPLPKNWALPSAT
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 7.287430 | 21.109426 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_05g0536400 | RBH | 1.213031 | 2.491482 | 9.717660 |
| Nipponbare | IRGSP 1.0 | MSU | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | RAP-db | Os05g0536400 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_05g0025030 | RBH | 0.683087 | 16.133627 | 10.853186 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_05g0024820 | RBH | 0.416460 | 5.323246 | 6.103568 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_05g0024830 | RBH | 0.733844 | 7.488954 | 10.264370 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_05g0024840 | RBH | 0.255464 | 0.453740 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_05g0024860 | RBH | 13.981126 | 21.832453 | 36.751171 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_05G0413800 | RBH | 14.371653 | 20.958064 | 41.0036045 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_05g0024460 | RBH | 0.321042 | 1.648332 | 2.095962 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_05G0425000 | RBH | 12.268611 | 10.72491 | 36.256525 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_05g0024660 | RBH | 0.174846 | 0.292511 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_05g0024530 | RBH | 0.647512 | 2.668857 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_05g0024730 | RBH | 0.865297 | 1.089632 | 2.816025 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_05g0024770 | RBH | 0.308128 | 8.011563 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_05G024220 | RBH | 0.862573 | 6.011574 | 5.344265 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_05g0024670 | RBH | 0.433383 | 11.312362 | 16.114893 |
